Click here to switch to the map view.

The map label for this gene is rbsB [H]

Identifier: 126447825

GI number: 126447825

Start: 1138724

End: 1139734

Strand: Reverse

Name: rbsB [H]

Synonym: BMA10247_A1166

Alternate gene names: 126447825

Gene position: 1139734-1138724 (Counterclockwise)

Preceding gene: 126447124

Following gene: 126446214

Centisome position: 48.44

GC content: 70.43

Gene sequence:

>1011_bases
ATGCTGTTCGCCGTCGCGCTCGCGATCGGCGCCGCCCCCGCTTGCGCGTCGCCCGCCGCCGGCGCTGCGCCGCCGGGGCC
GCGCGCGGGCCATGCGCCGCTGTCGCTCGCCGGCAAGCGGATCGGCATCACGGCGGCCGGCACCGATCACTACTGGGATC
TGCAGGCGTACCAGGGCGCGGTGGACGAAGTGAAGCGCCTCGGCGGCACGCCGATCGCGCTCGACGCCGGCCGCAACGAC
AGCCGCCAGATCGCGCAGATCCAGACGCTGATCGCGCAACAGCCCGATGCGATCATCGAGCAGCTCGGCACCGCATCCGT
GCTCGAGCCGTGGCTCAGGAAAATCCGGCAAGCGGGCATCCCGCTTTTCACGATCGACACCGCGTCGCCGTCGAGCCTGA
ACGTCGTCACGTCGGACAATTTCGCGATCGGCTCGCAGCTCGCGCTGAAGCTCGTCAACGATATCCGCGGCGAAGGCAAC
GTCCTCGTGTTCAACGGCTTCTACGGCGTGCCCGTGTGCGCGATCCGCTACGACCAGCTGAAAGCCGTGCTGAAGTGGTA
TCCGAAGGTGAAGATCATCGAGCCCGAGCTGCGCGACGTGATTCCGAACACGGCGCAGAACGCGTACGCGCAGATCAGCC
AGTTGCTGCAGAAGTATCCGAAAGGCGCGATCTCGGCGATCTGGGCCGCGTGGGACATTCCGCAGGTCGGCGCGACGCAG
GCGGTCGACGCGGCCGGCCGACGCGAGATCCGCACGTACGCGGTGGACGGCAGCCCCGAGGCGGTCGCGCTCGTGAGGAA
TCCGACCTCGAGCGCGGCGGCCGTCGTCGCGCAGCAGCCGGCGCTGATCGGCCGCACCGCCGTGCGCAACGTCGCGCGCT
ATCTGGCGGGCGACCGATCGCTGCCCGCGTACACGTTCGTGCCGTCGGTGCTCGTCACGAAGGACGACGCGGGTGTCGCG
CGGCCTGCGCTCGGGCAGACGCCGGCCGCCGCCGGGCTCGCGCGGCGATGA

Upstream 100 bases:

>100_bases
GCGGGCGTCGTTGCACAGAATCGTTCGTTCGCCTCCACGTCCGAACCCAGACCCGCCGATCATGCCACGCCCGCTTCCGT
CGCTTGCCCGCCTGTTGTCC

Downstream 100 bases:

>100_bases
AGGCCGCGCTCACGACGGCCGCGGCATCCGCCGCCGCGGCGCCGGACGCCGCCGGCGCGCCGCTCGCGCTCGACGTGCGG
CGCGTCGTCAAGCGCTTCGG

Product: ABC periplasmic-binding sugar transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MLFAVALAIGAAPACASPAAGAAPPGPRAGHAPLSLAGKRIGITAAGTDHYWDLQAYQGAVDEVKRLGGTPIALDAGRND
SRQIAQIQTLIAQQPDAIIEQLGTASVLEPWLRKIRQAGIPLFTIDTASPSSLNVVTSDNFAIGSQLALKLVNDIRGEGN
VLVFNGFYGVPVCAIRYDQLKAVLKWYPKVKIIEPELRDVIPNTAQNAYAQISQLLQKYPKGAISAIWAAWDIPQVGATQ
AVDAAGRREIRTYAVDGSPEAVALVRNPTSSAAAVVAQQPALIGRTAVRNVARYLAGDRSLPAYTFVPSVLVTKDDAGVA
RPALGQTPAAAGLARR

Sequences:

>Translated_336_residues
MLFAVALAIGAAPACASPAAGAAPPGPRAGHAPLSLAGKRIGITAAGTDHYWDLQAYQGAVDEVKRLGGTPIALDAGRND
SRQIAQIQTLIAQQPDAIIEQLGTASVLEPWLRKIRQAGIPLFTIDTASPSSLNVVTSDNFAIGSQLALKLVNDIRGEGN
VLVFNGFYGVPVCAIRYDQLKAVLKWYPKVKIIEPELRDVIPNTAQNAYAQISQLLQKYPKGAISAIWAAWDIPQVGATQ
AVDAAGRREIRTYAVDGSPEAVALVRNPTSSAAAVVAQQPALIGRTAVRNVARYLAGDRSLPAYTFVPSVLVTKDDAGVA
RPALGQTPAAAGLARR
>Mature_336_residues
MLFAVALAIGAAPACASPAAGAAPPGPRAGHAPLSLAGKRIGITAAGTDHYWDLQAYQGAVDEVKRLGGTPIALDAGRND
SRQIAQIQTLIAQQPDAIIEQLGTASVLEPWLRKIRQAGIPLFTIDTASPSSLNVVTSDNFAIGSQLALKLVNDIRGEGN
VLVFNGFYGVPVCAIRYDQLKAVLKWYPKVKIIEPELRDVIPNTAQNAYAQISQLLQKYPKGAISAIWAAWDIPQVGATQ
AVDAAGRREIRTYAVDGSPEAVALVRNPTSSAAAVVAQQPALIGRTAVRNVARYLAGDRSLPAYTFVPSVLVTKDDAGVA
RPALGQTPAAAGLARR

Specific function: Involved in the high-affinity D-ribose membrane transport system [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790674, Length=230, Percent_Identity=26.9565217391304, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 35280; Mature: 35280

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFAVALAIGAAPACASPAAGAAPPGPRAGHAPLSLAGKRIGITAAGTDHYWDLQAYQGA
CCEEEEEHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCEEEEEECCCCCEEEHHHHHHH
VDEVKRLGGTPIALDAGRNDSRQIAQIQTLIAQQPDAIIEQLGTASVLEPWLRKIRQAGI
HHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHCCC
PLFTIDTASPSSLNVVTSDNFAIGSQLALKLVNDIRGEGNVLVFNGFYGVPVCAIRYDQL
CEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEHHHH
KAVLKWYPKVKIIEPELRDVIPNTAQNAYAQISQLLQKYPKGAISAIWAAWDIPQVGATQ
HHHHHHCCCEEEECHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHH
AVDAAGRREIRTYAVDGSPEAVALVRNPTSSAAAVVAQQPALIGRTAVRNVARYLAGDRS
HHHHCCCCEEEEEEECCCCCEEEEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC
LPAYTFVPSVLVTKDDAGVARPALGQTPAAAGLARR
CCHHHHCCCEEEECCCCCCCCCCCCCCCHHHCCCCC
>Mature Secondary Structure
MLFAVALAIGAAPACASPAAGAAPPGPRAGHAPLSLAGKRIGITAAGTDHYWDLQAYQGA
CCEEEEEHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCEEEEEECCCCCEEEHHHHHHH
VDEVKRLGGTPIALDAGRNDSRQIAQIQTLIAQQPDAIIEQLGTASVLEPWLRKIRQAGI
HHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHCCC
PLFTIDTASPSSLNVVTSDNFAIGSQLALKLVNDIRGEGNVLVFNGFYGVPVCAIRYDQL
CEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEHHHH
KAVLKWYPKVKIIEPELRDVIPNTAQNAYAQISQLLQKYPKGAISAIWAAWDIPQVGATQ
HHHHHHCCCEEEECHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHH
AVDAAGRREIRTYAVDGSPEAVALVRNPTSSAAAVVAQQPALIGRTAVRNVARYLAGDRS
HHHHCCCCEEEEEEECCCCCEEEEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC
LPAYTFVPSVLVTKDDAGVARPALGQTPAAAGLARR
CCHHHHCCCEEEECCCCCCCCCCCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377; 7921236 [H]