Definition | Burkholderia mallei NCTC 10247 chromosome II, complete genome. |
---|---|
Accession | NC_009079 |
Length | 2,352,693 |
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The map label for this gene is rbsA [H]
Identifier: 126446214
GI number: 126446214
Start: 1136910
End: 1138727
Strand: Reverse
Name: rbsA [H]
Synonym: BMA10247_A1165
Alternate gene names: 126446214
Gene position: 1138727-1136910 (Counterclockwise)
Preceding gene: 126447825
Following gene: 126447923
Centisome position: 48.4
GC content: 75.8
Gene sequence:
>1818_bases ATGAAGGCCGCGCTCACGACGGCCGCGGCATCCGCCGCCGCGGCGCCGGACGCCGCCGGCGCGCCGCTCGCGCTCGACGT GCGGCGCGTCGTCAAGCGCTTCGGCGGCGTCGCCGCGCTGCGCGGCGCGTCGCTCGCGGTAACGCGCGGCACCGTGCATG GGCTGATCGGCCAGAACGGCGCGGGCAAGTCGACGCTCGTCAAGCTTCTGGCGGGCCTGCACGCGCCGGACGAAGGCGAG ATCACGGTCGGCGGCGTGCCGTTCGCGTCGGGCGGCGGCGGTTCCCGCGCGTCGGCCGGCGCGGCCCGGCGGCATTCGAC GGGCATCGGCTTCATCCATCAGGAACGGCTGCTGCCCGCGACGTTTACCGTCGCCGAGGCGCTCTTCTTCCCGCATCCGC CGACGCTCGGCGGCCGCGCGTCGCGACTCGCGCGGCTACTGCCGCTCGACGTGAAACGCATGCGCCGCGACTGTCGCGCG GTGCTGCACACGCAGTTCGGCCTGGACTTGGCGCCCGACCGGCTGATCGGCGAGCTGTCCGTCGCCGAGCAGCAGATCGT GCAGATCACGCGCGCGCTGCTCGGCCGCCACGAGATCCTCGTGTTCGACGAGCCGAGCGCCGCGCTCGTGTCGAGCGAGG TCGACCGGCTGCTGCGGACGATCGAGCGGCTGCGCGCCAACGGGCACACGATCCTCTACGTGTCGCACTACCTGGACGAG ATCGCGCGCGTATGCGACCGCGTGAGCGTGTTGCGCGACGGCGCCGACGTCGCGCACTTCGAGGCGCGCGCGGTATCGCG CGACACGCTCGTCGCGGCGATGATCGGCGCGCCGCAACCCGCCGCCGCCGCCCCTTCGGCGGCCACCGCCCGAGCCGCCG CCCGAGCCGATGCGCGGGTCAGTACACGGGCCGATGCATGGGGCGACGATCCGCACCGCGCGCCGGCCGGCGCCGATCCC GCGCGGCCCGGCGCGCGCGCCGCGCCGGGCGCGATCGCGCTCGAAGCGCGCGATCTCGCGTTGCCCGGCCGCTTCGGCCC GCTGTCGCTCGCGGTGCGGCGAGGCGAGATCGTCGGGCTGACGGGGGGGCTCGGCTCCGGCGGCAAGGACGTGATTCGTG CGCTGTTCGGCCTCGCGCGCGGCGTGCGCGGCAGCATCGCCGTGGACGGCCGCCCGGCGCGCGTGCGCCGGCCGCACGAC GCGGTCGCGCACGGCATCGCGCTCGTCCCGGAAAACCGCGCCGCGCACGGCGTCGCGCTCACGCTGCCGGTGCGCGAGAA CGTCGTGCTCGCCGACCTGTCGAGCGTATCGCGCTTCGGCCTCGTGCACGGGCGCCGCGAGGCCGACGTCGCCCGCGCGC TGATCCGCCGGCTCGACATCCGTCCCGCGCGGCCGGACTTGCCCGCGCGCTTCCTGTCGGGCGGCAACCAGCAGAAGGTC GCGCTCGCGAAGTGGCTCGGACGCGCGTCGACGGTCTATCTGCTCGACGAGCCGACGGTGGGCGTCGATGTCGGCGCGAA AGCGCAGATCTACCGGCTGATCGACGCGCTCGCGCGCGCCGGCGCGGCGGTGCTGCTGTTTTCGAGCGACCTGACCGAAC TGCTCGACGTGACGGACCGCGTGTACGTGATGGCGCGCGGCGAGATCGTCGCGCAGTGCGCATCCGCCGAGACGACGACG CAGGACGTGCTCGCGTGGGCGACGCTCGCGCGCGATGCGCGGCCCGGCGGCGGCGCGGGCGCGCACGACGCGGCCGCGCG CACCGGGACGCCGGGCGCGGCGGGCGCGGCCTCGTCCGCGGCGAAGGTGGCGACATGA
Upstream 100 bases:
>100_bases CGTACACGTTCGTGCCGTCGGTGCTCGTCACGAAGGACGACGCGGGTGTCGCGCGGCCTGCGCTCGGGCAGACGCCGGCC GCCGCCGGGCTCGCGCGGCG
Downstream 100 bases:
>100_bases GCGGCGACATGAGCGGCGGCGCATGCGATCTCGGCCGCGCGGGCGCGGCGGCGCGGCGCTCGCCGGAGACGGCGGGCGCG CCGGTCGCGCTTCCCGGCGC
Product: ribose transport ATP-binding protein RbsA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 605; Mature: 605
Protein sequence:
>605_residues MKAALTTAAASAAAAPDAAGAPLALDVRRVVKRFGGVAALRGASLAVTRGTVHGLIGQNGAGKSTLVKLLAGLHAPDEGE ITVGGVPFASGGGGSRASAGAARRHSTGIGFIHQERLLPATFTVAEALFFPHPPTLGGRASRLARLLPLDVKRMRRDCRA VLHTQFGLDLAPDRLIGELSVAEQQIVQITRALLGRHEILVFDEPSAALVSSEVDRLLRTIERLRANGHTILYVSHYLDE IARVCDRVSVLRDGADVAHFEARAVSRDTLVAAMIGAPQPAAAAPSAATARAAARADARVSTRADAWGDDPHRAPAGADP ARPGARAAPGAIALEARDLALPGRFGPLSLAVRRGEIVGLTGGLGSGGKDVIRALFGLARGVRGSIAVDGRPARVRRPHD AVAHGIALVPENRAAHGVALTLPVRENVVLADLSSVSRFGLVHGRREADVARALIRRLDIRPARPDLPARFLSGGNQQKV ALAKWLGRASTVYLLDEPTVGVDVGAKAQIYRLIDALARAGAAVLLFSSDLTELLDVTDRVYVMARGEIVAQCASAETTT QDVLAWATLARDARPGGGAGAHDAAARTGTPGAAGAASSAAKVAT
Sequences:
>Translated_605_residues MKAALTTAAASAAAAPDAAGAPLALDVRRVVKRFGGVAALRGASLAVTRGTVHGLIGQNGAGKSTLVKLLAGLHAPDEGE ITVGGVPFASGGGGSRASAGAARRHSTGIGFIHQERLLPATFTVAEALFFPHPPTLGGRASRLARLLPLDVKRMRRDCRA VLHTQFGLDLAPDRLIGELSVAEQQIVQITRALLGRHEILVFDEPSAALVSSEVDRLLRTIERLRANGHTILYVSHYLDE IARVCDRVSVLRDGADVAHFEARAVSRDTLVAAMIGAPQPAAAAPSAATARAAARADARVSTRADAWGDDPHRAPAGADP ARPGARAAPGAIALEARDLALPGRFGPLSLAVRRGEIVGLTGGLGSGGKDVIRALFGLARGVRGSIAVDGRPARVRRPHD AVAHGIALVPENRAAHGVALTLPVRENVVLADLSSVSRFGLVHGRREADVARALIRRLDIRPARPDLPARFLSGGNQQKV ALAKWLGRASTVYLLDEPTVGVDVGAKAQIYRLIDALARAGAAVLLFSSDLTELLDVTDRVYVMARGEIVAQCASAETTT QDVLAWATLARDARPGGGAGAHDAAARTGTPGAAGAASSAAKVAT >Mature_605_residues MKAALTTAAASAAAAPDAAGAPLALDVRRVVKRFGGVAALRGASLAVTRGTVHGLIGQNGAGKSTLVKLLAGLHAPDEGE ITVGGVPFASGGGGSRASAGAARRHSTGIGFIHQERLLPATFTVAEALFFPHPPTLGGRASRLARLLPLDVKRMRRDCRA VLHTQFGLDLAPDRLIGELSVAEQQIVQITRALLGRHEILVFDEPSAALVSSEVDRLLRTIERLRANGHTILYVSHYLDE IARVCDRVSVLRDGADVAHFEARAVSRDTLVAAMIGAPQPAAAAPSAATARAAARADARVSTRADAWGDDPHRAPAGADP ARPGARAAPGAIALEARDLALPGRFGPLSLAVRRGEIVGLTGGLGSGGKDVIRALFGLARGVRGSIAVDGRPARVRRPHD AVAHGIALVPENRAAHGVALTLPVRENVVLADLSSVSRFGLVHGRREADVARALIRRLDIRPARPDLPARFLSGGNQQKV ALAKWLGRASTVYLLDEPTVGVDVGAKAQIYRLIDALARAGAAVLLFSSDLTELLDVTDRVYVMARGEIVAQCASAETTT QDVLAWATLARDARPGGGAGAHDAAARTGTPGAAGAASSAAKVAT
Specific function: Part of the ABC transporter complex RbsABCD involved in ribose import. Responsible for energy coupling to the transport system [H]
COG id: COG1129
COG function: function code G; ABC-type sugar transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI27881501, Length=220, Percent_Identity=26.8181818181818, Blast_Score=79, Evalue=1e-14, Organism=Homo sapiens, GI30795238, Length=220, Percent_Identity=26.8181818181818, Blast_Score=79, Evalue=1e-14, Organism=Homo sapiens, GI150417984, Length=233, Percent_Identity=29.6137339055794, Blast_Score=67, Evalue=6e-11, Organism=Homo sapiens, GI116734710, Length=217, Percent_Identity=25.3456221198157, Blast_Score=66, Evalue=9e-11, Organism=Escherichia coli, GI1790190, Length=552, Percent_Identity=33.3333333333333, Blast_Score=286, Evalue=2e-78, Organism=Escherichia coli, GI1788210, Length=545, Percent_Identity=35.4128440366973, Blast_Score=285, Evalue=5e-78, Organism=Escherichia coli, GI1789991, Length=550, Percent_Identity=32.3636363636364, Blast_Score=274, Evalue=1e-74, Organism=Escherichia coli, GI1788472, Length=551, Percent_Identity=30.3085299455535, Blast_Score=267, Evalue=2e-72, Organism=Escherichia coli, GI48995001, Length=528, Percent_Identity=33.3333333333333, Blast_Score=264, Evalue=1e-71, Organism=Escherichia coli, GI1790525, Length=543, Percent_Identity=30.7550644567219, Blast_Score=260, Evalue=2e-70, Organism=Escherichia coli, GI1788897, Length=520, Percent_Identity=31.3461538461538, Blast_Score=255, Evalue=6e-69, Organism=Escherichia coli, GI1787792, Length=534, Percent_Identity=33.8951310861423, Blast_Score=240, Evalue=2e-64, Organism=Escherichia coli, GI87081782, Length=576, Percent_Identity=25.1736111111111, Blast_Score=104, Evalue=2e-23, Organism=Escherichia coli, GI1788506, Length=417, Percent_Identity=28.7769784172662, Blast_Score=100, Evalue=4e-22, Organism=Escherichia coli, GI48994943, Length=550, Percent_Identity=25.2727272727273, Blast_Score=90, Evalue=3e-19, Organism=Escherichia coli, GI145693107, Length=551, Percent_Identity=26.1343012704174, Blast_Score=90, Evalue=4e-19, Organism=Escherichia coli, GI1788225, Length=245, Percent_Identity=31.0204081632653, Blast_Score=84, Evalue=3e-17, Organism=Escherichia coli, GI1786703, Length=219, Percent_Identity=33.7899543378995, Blast_Score=84, Evalue=3e-17, Organism=Escherichia coli, GI1786345, Length=267, Percent_Identity=31.4606741573034, Blast_Score=81, Evalue=2e-16, Organism=Escherichia coli, GI1786398, Length=280, Percent_Identity=29.2857142857143, Blast_Score=79, Evalue=1e-15, Organism=Escherichia coli, GI87082268, Length=238, Percent_Identity=28.1512605042017, Blast_Score=78, Evalue=2e-15, Organism=Escherichia coli, GI87081834, Length=243, Percent_Identity=29.2181069958848, Blast_Score=77, Evalue=4e-15, Organism=Escherichia coli, GI1790739, Length=269, Percent_Identity=26.7657992565056, Blast_Score=76, Evalue=5e-15, Organism=Escherichia coli, GI1789672, Length=219, Percent_Identity=31.0502283105023, Blast_Score=75, Evalue=9e-15, Organism=Escherichia coli, GI87081709, Length=288, Percent_Identity=27.0833333333333, Blast_Score=75, Evalue=1e-14, Organism=Escherichia coli, GI1786253, Length=214, Percent_Identity=31.7757009345794, Blast_Score=74, Evalue=3e-14, Organism=Escherichia coli, GI1789864, Length=243, Percent_Identity=29.2181069958848, Blast_Score=74, Evalue=3e-14, Organism=Escherichia coli, GI1786872, Length=233, Percent_Identity=27.8969957081545, Blast_Score=73, Evalue=5e-14, Organism=Escherichia coli, GI87081791, Length=234, Percent_Identity=26.0683760683761, Blast_Score=73, Evalue=6e-14, Organism=Escherichia coli, GI1787105, Length=221, Percent_Identity=30.316742081448, Blast_Score=72, Evalue=8e-14, Organism=Escherichia coli, GI1789032, Length=236, Percent_Identity=30.5084745762712, Blast_Score=72, Evalue=8e-14, Organism=Escherichia coli, GI1789593, Length=232, Percent_Identity=28.448275862069, Blast_Score=69, Evalue=1e-12, Organism=Escherichia coli, GI1789873, Length=221, Percent_Identity=30.7692307692308, Blast_Score=69, Evalue=1e-12, Organism=Escherichia coli, GI1788761, Length=246, Percent_Identity=26.8292682926829, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI1789891, Length=232, Percent_Identity=29.7413793103448, Blast_Score=66, Evalue=5e-12, Organism=Escherichia coli, GI1786803, Length=247, Percent_Identity=25.9109311740891, Blast_Score=66, Evalue=6e-12, Organism=Escherichia coli, GI1787089, Length=235, Percent_Identity=28.0851063829787, Blast_Score=66, Evalue=7e-12, Organism=Escherichia coli, GI1787759, Length=236, Percent_Identity=30.0847457627119, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1790467, Length=291, Percent_Identity=25.085910652921, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1787029, Length=230, Percent_Identity=26.0869565217391, Blast_Score=64, Evalue=3e-11, Organism=Escherichia coli, GI1787712, Length=207, Percent_Identity=27.536231884058, Blast_Score=63, Evalue=5e-11, Organism=Escherichia coli, GI1788165, Length=200, Percent_Identity=31, Blast_Score=63, Evalue=5e-11, Organism=Escherichia coli, GI1788644, Length=236, Percent_Identity=30.9322033898305, Blast_Score=63, Evalue=5e-11, Organism=Caenorhabditis elegans, GI71983516, Length=257, Percent_Identity=30.7392996108949, Blast_Score=84, Evalue=2e-16, Organism=Caenorhabditis elegans, GI71983523, Length=257, Percent_Identity=30.7392996108949, Blast_Score=84, Evalue=3e-16, Organism=Caenorhabditis elegans, GI71983510, Length=257, Percent_Identity=30.7392996108949, Blast_Score=84, Evalue=3e-16, Organism=Caenorhabditis elegans, GI115533608, Length=232, Percent_Identity=25, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI281362751, Length=242, Percent_Identity=28.099173553719, Blast_Score=84, Evalue=3e-16, Organism=Drosophila melanogaster, GI24650853, Length=280, Percent_Identity=27.8571428571429, Blast_Score=81, Evalue=2e-15, Organism=Drosophila melanogaster, GI24650855, Length=243, Percent_Identity=28.3950617283951, Blast_Score=80, Evalue=3e-15, Organism=Drosophila melanogaster, GI24643674, Length=245, Percent_Identity=24.8979591836735, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI221500365, Length=223, Percent_Identity=28.6995515695067, Blast_Score=71, Evalue=3e-12, Organism=Drosophila melanogaster, GI116007184, Length=223, Percent_Identity=28.6995515695067, Blast_Score=70, Evalue=3e-12, Organism=Drosophila melanogaster, GI24582014, Length=250, Percent_Identity=26.8, Blast_Score=70, Evalue=4e-12, Organism=Drosophila melanogaster, GI24582012, Length=250, Percent_Identity=26.8, Blast_Score=70, Evalue=4e-12, Organism=Drosophila melanogaster, GI24666092, Length=241, Percent_Identity=28.6307053941909, Blast_Score=67, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR015861 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: =3.6.3.17 [H]
Molecular weight: Translated: 62558; Mature: 62558
Theoretical pI: Translated: 11.13; Mature: 11.13
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKAALTTAAASAAAAPDAAGAPLALDVRRVVKRFGGVAALRGASLAVTRGTVHGLIGQNG CCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCEEHCCCCEEEEECCHHHHHCCCCC AGKSTLVKLLAGLHAPDEGEITVGGVPFASGGGGSRASAGAARRHSTGIGFIHQERLLPA CCHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCHHHCCCCCCEEECCCCCCH TFTVAEALFFPHPPTLGGRASRLARLLPLDVKRMRRDCRAVLHTQFGLDLAPDRLIGELS HHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH VAEQQIVQITRALLGRHEILVFDEPSAALVSSEVDRLLRTIERLRANGHTILYVSHYLDE HHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHH IARVCDRVSVLRDGADVAHFEARAVSRDTLVAAMIGAPQPAAAAPSAATARAAARADARV HHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCC STRADAWGDDPHRAPAGADPARPGARAAPGAIALEARDLALPGRFGPLSLAVRRGEIVGL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEECCCCCCCHHEEEECCCEEEE TGGLGSGGKDVIRALFGLARGVRGSIAVDGRPARVRRPHDAVAHGIALVPENRAAHGVAL ECCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCEEECCCCCCCCCEEE TLPVRENVVLADLSSVSRFGLVHGRREADVARALIRRLDIRPARPDLPARFLSGGNQQKV EECCCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCHH ALAKWLGRASTVYLLDEPTVGVDVGAKAQIYRLIDALARAGAAVLLFSSDLTELLDVTDR HHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCHHHHHHCCCE VYVMARGEIVAQCASAETTTQDVLAWATLARDARPGGGAGAHDAAARTGTPGAAGAASSA EEEEECCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCCCCCC AKVAT HHCCC >Mature Secondary Structure MKAALTTAAASAAAAPDAAGAPLALDVRRVVKRFGGVAALRGASLAVTRGTVHGLIGQNG CCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCEEHCCCCEEEEECCHHHHHCCCCC AGKSTLVKLLAGLHAPDEGEITVGGVPFASGGGGSRASAGAARRHSTGIGFIHQERLLPA CCHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCHHHCCCCCCEEECCCCCCH TFTVAEALFFPHPPTLGGRASRLARLLPLDVKRMRRDCRAVLHTQFGLDLAPDRLIGELS HHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH VAEQQIVQITRALLGRHEILVFDEPSAALVSSEVDRLLRTIERLRANGHTILYVSHYLDE HHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHH IARVCDRVSVLRDGADVAHFEARAVSRDTLVAAMIGAPQPAAAAPSAATARAAARADARV HHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCC STRADAWGDDPHRAPAGADPARPGARAAPGAIALEARDLALPGRFGPLSLAVRRGEIVGL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEECCCCCCCHHEEEECCCEEEE TGGLGSGGKDVIRALFGLARGVRGSIAVDGRPARVRRPHDAVAHGIALVPENRAAHGVAL ECCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCEEECCCCCCCCCEEE TLPVRENVVLADLSSVSRFGLVHGRREADVARALIRRLDIRPARPDLPARFLSGGNQQKV EECCCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCHH ALAKWLGRASTVYLLDEPTVGVDVGAKAQIYRLIDALARAGAAVLLFSSDLTELLDVTDR HHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCHHHHHHCCCE VYVMARGEIVAQCASAETTTQDVLAWATLARDARPGGGAGAHDAAARTGTPGAAGAASSA EEEEECCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCCCCCC AKVAT HHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 12534463 [H]