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The map label for this gene is exbD1 [H]

Identifier: 126447638

GI number: 126447638

Start: 2000182

End: 2000610

Strand: Direct

Name: exbD1 [H]

Synonym: BMA10247_A2064

Alternate gene names: 126447638

Gene position: 2000182-2000610 (Clockwise)

Preceding gene: 126446944

Following gene: 126446699

Centisome position: 85.02

GC content: 63.17

Gene sequence:

>429_bases
ATGGCAATGAACACCAGTTTCGGCGACGACGACGATGACGGCCTGATGAACGAGATCAACATGACGCCGCTCGTCGACGT
CATGCTCGTACTCCTGATCATTTTCCTCGTGACGATCCCGGCGATGCATCATGCGGTGAAGATCGACCTGCCGCGCGCGA
GCAGTCAGCCGGTCGAAGTGAAGCCCAAGACGATCGACGTCGCCATCGAAAGCGACGGCACGGTTCTGTGGGACGACCAT
CCGGTGAGCGCGGCCGATCTACAGGCGCGCATCGCTCAAGCCGCGCAGACGAACCCGCAGCCCGAGCTGCATCTGCGCGC
GGATCGCAAGGTCGCGTACGAACGCGTCGCGGAAGTGATGTCGGCGGCGCAGGCGGGCGGCCTGACGAAGCTCGGCTTCG
TGACCGAGCCGAAATCGAACGCGAAGTAG

Upstream 100 bases:

>100_bases
CACGGCCTGCATGCGTACTTCGTGACGGGCACGCGTCTCGCGTCGTCCCAGCGCGACGGGCTGCGCCTCGCCGCGCGCGC
GAACTGAGCGGAGGTTCGCG

Downstream 100 bases:

>100_bases
CGCGCCGCGCGTGCGCCGCGTCCCGCATGCGGCGAGCGCGCGAAGCGCACACGAGCCGCAAAGTAAAAGGCCTTCATCGC
CAGATGAAGGCCCAGACTGC

Product: ExbD/TolR family transport energizing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 141

Protein sequence:

>142_residues
MAMNTSFGDDDDDGLMNEINMTPLVDVMLVLLIIFLVTIPAMHHAVKIDLPRASSQPVEVKPKTIDVAIESDGTVLWDDH
PVSAADLQARIAQAAQTNPQPELHLRADRKVAYERVAEVMSAAQAGGLTKLGFVTEPKSNAK

Sequences:

>Translated_142_residues
MAMNTSFGDDDDDGLMNEINMTPLVDVMLVLLIIFLVTIPAMHHAVKIDLPRASSQPVEVKPKTIDVAIESDGTVLWDDH
PVSAADLQARIAQAAQTNPQPELHLRADRKVAYERVAEVMSAAQAGGLTKLGFVTEPKSNAK
>Mature_141_residues
AMNTSFGDDDDDGLMNEINMTPLVDVMLVLLIIFLVTIPAMHHAVKIDLPRASSQPVEVKPKTIDVAIESDGTVLWDDHP
VSAADLQARIAQAAQTNPQPELHLRADRKVAYERVAEVMSAAQAGGLTKLGFVTEPKSNAK

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=132, Percent_Identity=34.0909090909091, Blast_Score=86, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15372; Mature: 15241

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMNTSFGDDDDDGLMNEINMTPLVDVMLVLLIIFLVTIPAMHHAVKIDLPRASSQPVEV
CCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCEEE
KPKTIDVAIESDGTVLWDDHPVSAADLQARIAQAAQTNPQPELHLRADRKVAYERVAEVM
CCCEEEEEEECCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHH
SAAQAGGLTKLGFVTEPKSNAK
HHHHCCCCEECCEEECCCCCCC
>Mature Secondary Structure 
AMNTSFGDDDDDGLMNEINMTPLVDVMLVLLIIFLVTIPAMHHAVKIDLPRASSQPVEV
CCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCEEE
KPKTIDVAIESDGTVLWDDHPVSAADLQARIAQAAQTNPQPELHLRADRKVAYERVAEVM
CCCEEEEEEECCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHH
SAAQAGGLTKLGFVTEPKSNAK
HHHHCCCCEECCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371459 [H]