Definition | Burkholderia mallei NCTC 10247 chromosome II, complete genome. |
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Accession | NC_009079 |
Length | 2,352,693 |
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The map label for this gene is hcp1 [H]
Identifier: 126447326
GI number: 126447326
Start: 1949126
End: 1949653
Strand: Reverse
Name: hcp1 [H]
Synonym: BMA10247_A2016
Alternate gene names: 126447326
Gene position: 1949653-1949126 (Counterclockwise)
Preceding gene: 126447820
Following gene: 126446766
Centisome position: 82.87
GC content: 61.93
Gene sequence:
>528_bases ATGGCAAATGCTTTGGTTGATTACTTCTTGCAGATCGATGGCGTCGAGGGTGAGTCGACCGATCAGCAATATCCCGGTCT GATCCAGATCCAGAGCTGGCAGTGGGCGGAAGAGAACTCGGGCCGCTGGGGCTTCGGCAGCGGCGGCGGCGCGGGCAAGG TCGAGATGAAGGACTTCGAGTTCCGCATGGTGTCGAACAAGGCGTCGCCGAAGCTGTTCCTGATGTGCGCGACGGGTGAG CACATCCAGAATGCGAAGCTGATCTGCCGCAAGTCGGGCAAGGGCCAGCAGGAGTTCCTGACGATCTCGTTCGCGAGCGG CCTCGTGTCGTCGTTCCGCACGCTCGGCAACATGCCGATCTCGCAGCTCGGTCACGCGAGCGGCGAAGTCGACGGCGTGC TGCCGACGGATCAGATCCGCATCAACTTCGTCCAGATCGAGTTCGAGTACCGCGAGCAGCGCAACGACGGCACGATGGGC GCCGTGATCAAGGCGGGCTACGACCTGAAGCAGAACGCGCCGATCTAA
Upstream 100 bases:
>100_bases GTGTTCGAGGCGCTGCGGGATGGAGTCGAACCGTTCCGCGGCAGATTCAACAGCGGTCTTTTCGATATGGTCTTGTTATA ACTAATTAGGAGTTCATGGC
Downstream 100 bases:
>100_bases CCCGTCGGAAGGTTCTGGTTTCCAGGCTTAACCTTGGGCAGTGTTGTGGCCTCGCGCCACAACACTCGGGAACACGCACG TGAGCGATCTTCAACTCTAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 175; Mature: 174
Protein sequence:
>175_residues MANALVDYFLQIDGVEGESTDQQYPGLIQIQSWQWAEENSGRWGFGSGGGAGKVEMKDFEFRMVSNKASPKLFLMCATGE HIQNAKLICRKSGKGQQEFLTISFASGLVSSFRTLGNMPISQLGHASGEVDGVLPTDQIRINFVQIEFEYREQRNDGTMG AVIKAGYDLKQNAPI
Sequences:
>Translated_175_residues MANALVDYFLQIDGVEGESTDQQYPGLIQIQSWQWAEENSGRWGFGSGGGAGKVEMKDFEFRMVSNKASPKLFLMCATGE HIQNAKLICRKSGKGQQEFLTISFASGLVSSFRTLGNMPISQLGHASGEVDGVLPTDQIRINFVQIEFEYREQRNDGTMG AVIKAGYDLKQNAPI >Mature_174_residues ANALVDYFLQIDGVEGESTDQQYPGLIQIQSWQWAEENSGRWGFGSGGGAGKVEMKDFEFRMVSNKASPKLFLMCATGEH IQNAKLICRKSGKGQQEFLTISFASGLVSSFRTLGNMPISQLGHASGEVDGVLPTDQIRINFVQIEFEYREQRNDGTMGA VIKAGYDLKQNAPI
Specific function: Required for assembly of the protein secretion apparatus HSI-I. Actively secreted during chronic infection of cystic fibrosis patients [H]
COG id: COG3157
COG function: function code S; Hemolysin-coregulated protein (uncharacterized)
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the hcp1 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017728 - InterPro: IPR008514 [H]
Pfam domain/function: PF05638 DUF796 [H]
EC number: NA
Molecular weight: Translated: 19276; Mature: 19145
Theoretical pI: Translated: 4.98; Mature: 4.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANALVDYFLQIDGVEGESTDQQYPGLIQIQSWQWAEENSGRWGFGSGGGAGKVEMKDFE CCCHHEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCEE FRMVSNKASPKLFLMCATGEHIQNAKLICRKSGKGQQEFLTISFASGLVSSFRTLGNMPI EEEECCCCCCEEEEEEECCCCCCCCEEEEECCCCCCEEEEEEEHHHHHHHHHHHHCCCCH SQLGHASGEVDGVLPTDQIRINFVQIEFEYREQRNDGTMGAVIKAGYDLKQNAPI HHHCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCC >Mature Secondary Structure ANALVDYFLQIDGVEGESTDQQYPGLIQIQSWQWAEENSGRWGFGSGGGAGKVEMKDFE CCHHEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCEE FRMVSNKASPKLFLMCATGEHIQNAKLICRKSGKGQQEFLTISFASGLVSSFRTLGNMPI EEEECCCCCCEEEEEEECCCCCCCCEEEEECCCCCCEEEEEEEHHHHHHHHHHHHCCCCH SQLGHASGEVDGVLPTDQIRINFVQIEFEYREQRNDGTMGAVIKAGYDLKQNAPI HHHCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]