Definition Burkholderia mallei NCTC 10247 chromosome II, complete genome.
Accession NC_009079
Length 2,352,693

Click here to switch to the map view.

The map label for this gene is hcp1 [H]

Identifier: 126447326

GI number: 126447326

Start: 1949126

End: 1949653

Strand: Reverse

Name: hcp1 [H]

Synonym: BMA10247_A2016

Alternate gene names: 126447326

Gene position: 1949653-1949126 (Counterclockwise)

Preceding gene: 126447820

Following gene: 126446766

Centisome position: 82.87

GC content: 61.93

Gene sequence:

>528_bases
ATGGCAAATGCTTTGGTTGATTACTTCTTGCAGATCGATGGCGTCGAGGGTGAGTCGACCGATCAGCAATATCCCGGTCT
GATCCAGATCCAGAGCTGGCAGTGGGCGGAAGAGAACTCGGGCCGCTGGGGCTTCGGCAGCGGCGGCGGCGCGGGCAAGG
TCGAGATGAAGGACTTCGAGTTCCGCATGGTGTCGAACAAGGCGTCGCCGAAGCTGTTCCTGATGTGCGCGACGGGTGAG
CACATCCAGAATGCGAAGCTGATCTGCCGCAAGTCGGGCAAGGGCCAGCAGGAGTTCCTGACGATCTCGTTCGCGAGCGG
CCTCGTGTCGTCGTTCCGCACGCTCGGCAACATGCCGATCTCGCAGCTCGGTCACGCGAGCGGCGAAGTCGACGGCGTGC
TGCCGACGGATCAGATCCGCATCAACTTCGTCCAGATCGAGTTCGAGTACCGCGAGCAGCGCAACGACGGCACGATGGGC
GCCGTGATCAAGGCGGGCTACGACCTGAAGCAGAACGCGCCGATCTAA

Upstream 100 bases:

>100_bases
GTGTTCGAGGCGCTGCGGGATGGAGTCGAACCGTTCCGCGGCAGATTCAACAGCGGTCTTTTCGATATGGTCTTGTTATA
ACTAATTAGGAGTTCATGGC

Downstream 100 bases:

>100_bases
CCCGTCGGAAGGTTCTGGTTTCCAGGCTTAACCTTGGGCAGTGTTGTGGCCTCGCGCCACAACACTCGGGAACACGCACG
TGAGCGATCTTCAACTCTAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 174

Protein sequence:

>175_residues
MANALVDYFLQIDGVEGESTDQQYPGLIQIQSWQWAEENSGRWGFGSGGGAGKVEMKDFEFRMVSNKASPKLFLMCATGE
HIQNAKLICRKSGKGQQEFLTISFASGLVSSFRTLGNMPISQLGHASGEVDGVLPTDQIRINFVQIEFEYREQRNDGTMG
AVIKAGYDLKQNAPI

Sequences:

>Translated_175_residues
MANALVDYFLQIDGVEGESTDQQYPGLIQIQSWQWAEENSGRWGFGSGGGAGKVEMKDFEFRMVSNKASPKLFLMCATGE
HIQNAKLICRKSGKGQQEFLTISFASGLVSSFRTLGNMPISQLGHASGEVDGVLPTDQIRINFVQIEFEYREQRNDGTMG
AVIKAGYDLKQNAPI
>Mature_174_residues
ANALVDYFLQIDGVEGESTDQQYPGLIQIQSWQWAEENSGRWGFGSGGGAGKVEMKDFEFRMVSNKASPKLFLMCATGEH
IQNAKLICRKSGKGQQEFLTISFASGLVSSFRTLGNMPISQLGHASGEVDGVLPTDQIRINFVQIEFEYREQRNDGTMGA
VIKAGYDLKQNAPI

Specific function: Required for assembly of the protein secretion apparatus HSI-I. Actively secreted during chronic infection of cystic fibrosis patients [H]

COG id: COG3157

COG function: function code S; Hemolysin-coregulated protein (uncharacterized)

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hcp1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017728
- InterPro:   IPR008514 [H]

Pfam domain/function: PF05638 DUF796 [H]

EC number: NA

Molecular weight: Translated: 19276; Mature: 19145

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANALVDYFLQIDGVEGESTDQQYPGLIQIQSWQWAEENSGRWGFGSGGGAGKVEMKDFE
CCCHHEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCEE
FRMVSNKASPKLFLMCATGEHIQNAKLICRKSGKGQQEFLTISFASGLVSSFRTLGNMPI
EEEECCCCCCEEEEEEECCCCCCCCEEEEECCCCCCEEEEEEEHHHHHHHHHHHHCCCCH
SQLGHASGEVDGVLPTDQIRINFVQIEFEYREQRNDGTMGAVIKAGYDLKQNAPI
HHHCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCC
>Mature Secondary Structure 
ANALVDYFLQIDGVEGESTDQQYPGLIQIQSWQWAEENSGRWGFGSGGGAGKVEMKDFE
CCHHEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCEE
FRMVSNKASPKLFLMCATGEHIQNAKLICRKSGKGQQEFLTISFASGLVSSFRTLGNMPI
EEEECCCCCCEEEEEEECCCCCCCCEEEEECCCCCCEEEEEEEHHHHHHHHHHHHCCCCH
SQLGHASGEVDGVLPTDQIRINFVQIEFEYREQRNDGTMGAVIKAGYDLKQNAPI
HHHCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]