Click here to switch to the map view.

The map label for this gene is yhdI [H]

Identifier: 126447260

GI number: 126447260

Start: 1968502

End: 1970004

Strand: Direct

Name: yhdI [H]

Synonym: BMA10247_A2034

Alternate gene names: 126447260

Gene position: 1968502-1970004 (Clockwise)

Preceding gene: 126446767

Following gene: 126447582

Centisome position: 83.67

GC content: 70.92

Gene sequence:

>1503_bases
ATGGCGCGAGGAAAAACCGCGATCCCGCTCGACTTGCCGCGCCCGCCCGGCTTGTCCGTTCGCCGCGCGCAATCGAAACA
GGACTGCATCGGCGACGCGCTGCGCGACGCGATCCTGCGCAAGCTGCTGCCGGGCGGCAGCCCGCTGCCGTCCACCCGAA
CGCTCGCCGCGCGATGGGGCGTCGCGCGCGGCACGGTGGAAGCCGCGTTCGACCGCCTCTGCGCGGAAGGCTACATCGCC
CGCGCGCACGGCTCGGGCACGCGCGTGAGCGCCGTCGTCCCCGACGCCTACCTGTCGCCGGCGCGGCATCCTGCGAAGCC
CGCGCCCCATGCGCGCGGCAAGCCTGCCGACGCGCTCGCGCGCGAGCGCGCGGCCGAAGCGGACGGTTCGGTCCGCGCCG
GCGTGCCGTTCGTCGCGCGGCTGGCCGATCCGGGCCTGCTGCCGATGCGAACCTGGAAGCGGCACATCGGCATTGGCCTG
TCCGAAGCGACGCACGCCGCGCTCTGCGCGCTGCCCCCGCAAGGCGCCGAGCCGCTGCGCGCGCGGATCGCCGACTATCT
CGGCCAATATCGCGGCATCGCATGCGACGCGGCCGACATCTTCATCACGACCGGCATCCGGCATTCGCTCGATCTGATCG
CCCGCACGATCGCCGGCAGCGGCAGCCGGATCGCGATCGAGGACCCCGGCTACCGCACCGCGCGGCGAATTTTCGAGCTG
GCCGGCGCCGAATCGATCAGCGTTGCGGTCGGCCCGGAAGGCATCGACACCCACGCATTGAGCGCGCATCGCCGCGTCGC
TGCCGCGTATGTGACACCCGCGCATCAGTCGCCGCTCGGCGTGACGATGTCGATCTCGCGGCGTCTCGACCTGCTCGATT
GGGCACACGCGCGGCGCACGTGGGTGATCGAGGACGACTACGACGGGGAGTTCGGCTATCAGTCAGCGCCGCTGCCCGCG
CTGAAATCACTCGACGTGCGCGAACGCGTGATCTACTGCGGCTCGTTCAACAAGACGCTGTTTTCGGGGCTTCGCGTCGG
CTTCATGGTGGTGCCGGCGGCGCTACGCGCGCCGATATCGGCGCTCGTGCAGGCCGTCGGGCGCCCGGTGGGCACGACCG
AGCAGCTCGCGCTGGCGAGTTTCATCGGCAGCGGCGATTTCGCGAAGCATCTGCGCACGAGCCGCCACGCGTACCTGCAA
CGCCGCGATGCGGTGCTCGAGCAGCTTCGCCGGTACGCCGACGGCCAGTATGCGATTTCCGGCGAACACACCGGGTTTCA
TTTCGTGCTGTGGCTCGGGCGCGGAATCGACGAACGCACGTTCGCCGAGGAAGCGGCGAACATCGGTCTCGCGCTCGAGC
CGCTGCGCGCGTTCTGCACGCAAGCGGCGCTGCCCGCAGGCGTCGTCGTCGGCTATTCGGCGCTGAGCGTCGCGCAAGCG
CGCTACGCGGGGAAAAAGCTCGGACAACTGCTCGCCGGTGTGCGGCGCGACGCCGCCGCGTGA

Upstream 100 bases:

>100_bases
GCGAGGTTCTCGCGGCCTGGATCGATTGGCGCAAGCCGGAATCTAAACGCAATGTGGTATAAGCCGAAGAACCACTTGTT
CGAATGTTGAATAGACCACT

Downstream 100 bases:

>100_bases
GCGTTCGAGTGTGTCGCGAGCGGCGTGTTCGGTGTTCGGTGTTCTGCGTTCAAGCGTCCGATGTCGGATGCCCGACGTCC
AACGTTTCAACGATCACTCA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 500; Mature: 499

Protein sequence:

>500_residues
MARGKTAIPLDLPRPPGLSVRRAQSKQDCIGDALRDAILRKLLPGGSPLPSTRTLAARWGVARGTVEAAFDRLCAEGYIA
RAHGSGTRVSAVVPDAYLSPARHPAKPAPHARGKPADALARERAAEADGSVRAGVPFVARLADPGLLPMRTWKRHIGIGL
SEATHAALCALPPQGAEPLRARIADYLGQYRGIACDAADIFITTGIRHSLDLIARTIAGSGSRIAIEDPGYRTARRIFEL
AGAESISVAVGPEGIDTHALSAHRRVAAAYVTPAHQSPLGVTMSISRRLDLLDWAHARRTWVIEDDYDGEFGYQSAPLPA
LKSLDVRERVIYCGSFNKTLFSGLRVGFMVVPAALRAPISALVQAVGRPVGTTEQLALASFIGSGDFAKHLRTSRHAYLQ
RRDAVLEQLRRYADGQYAISGEHTGFHFVLWLGRGIDERTFAEEAANIGLALEPLRAFCTQAALPAGVVVGYSALSVAQA
RYAGKKLGQLLAGVRRDAAA

Sequences:

>Translated_500_residues
MARGKTAIPLDLPRPPGLSVRRAQSKQDCIGDALRDAILRKLLPGGSPLPSTRTLAARWGVARGTVEAAFDRLCAEGYIA
RAHGSGTRVSAVVPDAYLSPARHPAKPAPHARGKPADALARERAAEADGSVRAGVPFVARLADPGLLPMRTWKRHIGIGL
SEATHAALCALPPQGAEPLRARIADYLGQYRGIACDAADIFITTGIRHSLDLIARTIAGSGSRIAIEDPGYRTARRIFEL
AGAESISVAVGPEGIDTHALSAHRRVAAAYVTPAHQSPLGVTMSISRRLDLLDWAHARRTWVIEDDYDGEFGYQSAPLPA
LKSLDVRERVIYCGSFNKTLFSGLRVGFMVVPAALRAPISALVQAVGRPVGTTEQLALASFIGSGDFAKHLRTSRHAYLQ
RRDAVLEQLRRYADGQYAISGEHTGFHFVLWLGRGIDERTFAEEAANIGLALEPLRAFCTQAALPAGVVVGYSALSVAQA
RYAGKKLGQLLAGVRRDAAA
>Mature_499_residues
ARGKTAIPLDLPRPPGLSVRRAQSKQDCIGDALRDAILRKLLPGGSPLPSTRTLAARWGVARGTVEAAFDRLCAEGYIAR
AHGSGTRVSAVVPDAYLSPARHPAKPAPHARGKPADALARERAAEADGSVRAGVPFVARLADPGLLPMRTWKRHIGIGLS
EATHAALCALPPQGAEPLRARIADYLGQYRGIACDAADIFITTGIRHSLDLIARTIAGSGSRIAIEDPGYRTARRIFELA
GAESISVAVGPEGIDTHALSAHRRVAAAYVTPAHQSPLGVTMSISRRLDLLDWAHARRTWVIEDDYDGEFGYQSAPLPAL
KSLDVRERVIYCGSFNKTLFSGLRVGFMVVPAALRAPISALVQAVGRPVGTTEQLALASFIGSGDFAKHLRTSRHAYLQR
RDAVLEQLRRYADGQYAISGEHTGFHFVLWLGRGIDERTFAEEAANIGLALEPLRAFCTQAALPAGVVVGYSALSVAQAR
YAGKKLGQLLAGVRRDAAA

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=314, Percent_Identity=23.5668789808917, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI33469970, Length=314, Percent_Identity=23.5668789808917, Blast_Score=84, Evalue=2e-16,
Organism=Escherichia coli, GI1787710, Length=445, Percent_Identity=27.6404494382022, Blast_Score=129, Evalue=6e-31,
Organism=Escherichia coli, GI1790797, Length=432, Percent_Identity=25.462962962963, Blast_Score=111, Evalue=1e-25,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 53418; Mature: 53287

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: PS50949 HTH_GNTR ; PS00626 RCC1_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARGKTAIPLDLPRPPGLSVRRAQSKQDCIGDALRDAILRKLLPGGSPLPSTRTLAARWG
CCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCC
VARGTVEAAFDRLCAEGYIARAHGSGTRVSAVVPDAYLSPARHPAKPAPHARGKPADALA
CHHHHHHHHHHHHHHCCCEEEECCCCCEEEEECCHHHHCCCCCCCCCCCCCCCCCHHHHH
RERAAEADGSVRAGVPFVARLADPGLLPMRTWKRHIGIGLSEATHAALCALPPQGAEPLR
HHHHHCCCCCEECCCCHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHEEEECCCCCCHHHH
ARIADYLGQYRGIACDAADIFITTGIRHSLDLIARTIAGSGSRIAIEDPGYRTARRIFEL
HHHHHHHHHHCCCEECCCCEEEECCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHH
AGAESISVAVGPEGIDTHALSAHRRVAAAYVTPAHQSPLGVTMSISRRLDLLDWAHARRT
HCCCEEEEEECCCCCCHHHHHHHHHHHHEEECCCCCCCCCEEEEHHHHHHHHHHHHCCEE
WVIEDDYDGEFGYQSAPLPALKSLDVRERVIYCGSFNKTLFSGLRVGFMVVPAALRAPIS
EEEECCCCCCCCCCCCCCHHHHCCCHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
ALVQAVGRPVGTTEQLALASFIGSGDFAKHLRTSRHAYLQRRDAVLEQLRRYADGQYAIS
HHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEC
GEHTGFHFVLWLGRGIDERTFAEEAANIGLALEPLRAFCTQAALPAGVVVGYSALSVAQA
CCCCCEEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
RYAGKKLGQLLAGVRRDAAA
HHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ARGKTAIPLDLPRPPGLSVRRAQSKQDCIGDALRDAILRKLLPGGSPLPSTRTLAARWG
CCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCC
VARGTVEAAFDRLCAEGYIARAHGSGTRVSAVVPDAYLSPARHPAKPAPHARGKPADALA
CHHHHHHHHHHHHHHCCCEEEECCCCCEEEEECCHHHHCCCCCCCCCCCCCCCCCHHHHH
RERAAEADGSVRAGVPFVARLADPGLLPMRTWKRHIGIGLSEATHAALCALPPQGAEPLR
HHHHHCCCCCEECCCCHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHEEEECCCCCCHHHH
ARIADYLGQYRGIACDAADIFITTGIRHSLDLIARTIAGSGSRIAIEDPGYRTARRIFEL
HHHHHHHHHHCCCEECCCCEEEECCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHH
AGAESISVAVGPEGIDTHALSAHRRVAAAYVTPAHQSPLGVTMSISRRLDLLDWAHARRT
HCCCEEEEEECCCCCCHHHHHHHHHHHHEEECCCCCCCCCEEEEHHHHHHHHHHHHCCEE
WVIEDDYDGEFGYQSAPLPALKSLDVRERVIYCGSFNKTLFSGLRVGFMVVPAALRAPIS
EEEECCCCCCCCCCCCCCHHHHCCCHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
ALVQAVGRPVGTTEQLALASFIGSGDFAKHLRTSRHAYLQRRDAVLEQLRRYADGQYAIS
HHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEC
GEHTGFHFVLWLGRGIDERTFAEEAANIGLALEPLRAFCTQAALPAGVVVGYSALSVAQA
CCCCCEEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
RYAGKKLGQLLAGVRRDAAA
HHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]