Definition | Burkholderia mallei NCTC 10247 chromosome II, complete genome. |
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Accession | NC_009079 |
Length | 2,352,693 |
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The map label for this gene is rpoE [H]
Identifier: 126447139
GI number: 126447139
Start: 1127423
End: 1127944
Strand: Direct
Name: rpoE [H]
Synonym: BMA10247_A1154
Alternate gene names: 126447139
Gene position: 1127423-1127944 (Clockwise)
Preceding gene: 126445785
Following gene: 126446332
Centisome position: 47.92
GC content: 70.11
Gene sequence:
>522_bases GTGAGCTTCGAATCGGACGTCGTCGGCTGGCTGCCGCAGTTGCGCCGCTATGCGCGCGCGCTGACGGGCGACCCCGCGTG GGCCGACGATCTCGTACAGGACACCGTCGAGCGCGCGTTCTCGCGCATGCGCGCGTTCCGTCCCGACAGCAATCTGCGCG CGTGGCTGTTGACGATCCTGCGCCATCTGTACATCGATCAGTTGCGCGCGCGCCGCGAATTCGCCGTCGACGACGACGAA GGCCCGTGGCGCACGCTCGAGGCGCCCGCCGGCCAGATCGACGCGCTCGTGCTGCGCGACGTGCAGCGAATGCTGTACCG GCTGCCGCTCGAGCAGCGCGAAGTGCTGCTGCTCGTCTGCGTCGAGGAATTGAGCTATCAGGACGCGTCGGCGGTGCTCG GCGTGCCGGTCGGCACCGTGATGTCGCGGCTGTCGCGCGCGCGGGAGCGCATGCGCGCGCTGCTGACCGACGCGCCGCTG CGGCCGCCGCTGTCCCTTACCGCTGCGAGACATCATCGATGA
Upstream 100 bases:
>100_bases GGGCGACATGTCGCCGTCCGACCATGCGGCGCCGATGGGCGGCTACGGCCGCGGCGGCGGCAGCGGCGGTGGCGGCGGCT ATTGAACGACGGCGCCGCGC
Downstream 100 bases:
>100_bases GCGACGATCCCGATCTTTGCGTTGCACCGGAATCCGACGAGCCGGGGCTCCTCGCGCTGTCGGCGTTCGTCGACGGCGAA CTGCCGGACGCGCAGAGCCG
Product: sigma-70 family RNA polymerase sigma factor
Products: NA
Alternate protein names: Sigma-24 [H]
Number of amino acids: Translated: 173; Mature: 172
Protein sequence:
>173_residues MSFESDVVGWLPQLRRYARALTGDPAWADDLVQDTVERAFSRMRAFRPDSNLRAWLLTILRHLYIDQLRARREFAVDDDE GPWRTLEAPAGQIDALVLRDVQRMLYRLPLEQREVLLLVCVEELSYQDASAVLGVPVGTVMSRLSRARERMRALLTDAPL RPPLSLTAARHHR
Sequences:
>Translated_173_residues MSFESDVVGWLPQLRRYARALTGDPAWADDLVQDTVERAFSRMRAFRPDSNLRAWLLTILRHLYIDQLRARREFAVDDDE GPWRTLEAPAGQIDALVLRDVQRMLYRLPLEQREVLLLVCVEELSYQDASAVLGVPVGTVMSRLSRARERMRALLTDAPL RPPLSLTAARHHR >Mature_172_residues SFESDVVGWLPQLRRYARALTGDPAWADDLVQDTVERAFSRMRAFRPDSNLRAWLLTILRHLYIDQLRARREFAVDDDEG PWRTLEAPAGQIDALVLRDVQRMLYRLPLEQREVLLLVCVEELSYQDASAVLGVPVGTVMSRLSRARERMRALLTDAPLR PPLSLTAARHHR
Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: <10 [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014284 - InterPro: IPR014293 - InterPro: IPR000838 - InterPro: IPR007627 - InterPro: IPR013249 - InterPro: IPR013325 - InterPro: IPR013324 [H]
Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]
EC number: NA
Molecular weight: Translated: 19931; Mature: 19800
Theoretical pI: Translated: 8.49; Mature: 8.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFESDVVGWLPQLRRYARALTGDPAWADDLVQDTVERAFSRMRAFRPDSNLRAWLLTIL CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH RHLYIDQLRARREFAVDDDEGPWRTLEAPAGQIDALVLRDVQRMLYRLPLEQREVLLLVC HHHHHHHHHHHHHCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH VEELSYQDASAVLGVPVGTVMSRLSRARERMRALLTDAPLRPPLSLTAARHHR HHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCC >Mature Secondary Structure SFESDVVGWLPQLRRYARALTGDPAWADDLVQDTVERAFSRMRAFRPDSNLRAWLLTIL CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH RHLYIDQLRARREFAVDDDEGPWRTLEAPAGQIDALVLRDVQRMLYRLPLEQREVLLLVC HHHHHHHHHHHHHCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH VEELSYQDASAVLGVPVGTVMSRLSRARERMRALLTDAPLRPPLSLTAARHHR HHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12788972 [H]