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The map label for this gene is fecI [H]

Identifier: 126446971

GI number: 126446971

Start: 1130717

End: 1131226

Strand: Direct

Name: fecI [H]

Synonym: BMA10247_A1159

Alternate gene names: 126446971

Gene position: 1130717-1131226 (Clockwise)

Preceding gene: 126447634

Following gene: 126445906

Centisome position: 48.06

GC content: 70.39

Gene sequence:

>510_bases
ATGCCGGCCAACACTTTGCGTCTGCAGCGGGAGATCGCTGCGCTCTATACCGGTCATCGCGGCTGGCTGCACGGCTGGCT
GTCGAAGAAGCTCGGCTGCGGCGAGCGCGCGGCCGATCTGGTTCACGACACGTTCATCCGCCTGCTCGCACGCGACGAGC
CGATCGACGCGGCCGAGCCGCGCGCGTTCCTGACGACCGTCGCGCAGCACGTGCTGTACAACCACTGGCGGCGCGAGCGG
CTCGAGCGCGCGTATCTCGACGCGCTCGCGCAATGGCCGGAGGCGGTCGCGCCGTCGCCGGAGACACGCGCCGTCCTGTT
CGAGACGCTCGTCGAGGTCGACCGGATGCTCGACGGGCTGCCCGCCGTCGTTCGCCGCGCGTTCCTGCTCGCGCAGCTCG
ACGGCATGACGCACGCGCAGATCGCGGCCGAGCTGCGCGTGTCGCTCGCGACCGTCAAGCGCTACCTGGTGAAAGCGGGC
GCGCAGTGCTACTTCGCGATCGCCGCATGA

Upstream 100 bases:

>100_bases
CGTGCGGACGCATTCACCGTCCGGTTACAAATACGTATATAATAATCATTCTCATTTACAAAATAGCATTCCGGCGTGAC
GGTCCGGGGGGATCACGTCC

Downstream 100 bases:

>100_bases
GCGGCGCGAAGCCGGCGGGCGGCCCGCCCGCGGTGCCCGAGCGCGTCGCGCGGCGTGCGGTCCAATGGTGGGTCGAGCTC
GGCGCCGCGCCCGCGAGCGA

Product: ECF subfamily RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 168

Protein sequence:

>169_residues
MPANTLRLQREIAALYTGHRGWLHGWLSKKLGCGERAADLVHDTFIRLLARDEPIDAAEPRAFLTTVAQHVLYNHWRRER
LERAYLDALAQWPEAVAPSPETRAVLFETLVEVDRMLDGLPAVVRRAFLLAQLDGMTHAQIAAELRVSLATVKRYLVKAG
AQCYFAIAA

Sequences:

>Translated_169_residues
MPANTLRLQREIAALYTGHRGWLHGWLSKKLGCGERAADLVHDTFIRLLARDEPIDAAEPRAFLTTVAQHVLYNHWRRER
LERAYLDALAQWPEAVAPSPETRAVLFETLVEVDRMLDGLPAVVRRAFLLAQLDGMTHAQIAAELRVSLATVKRYLVKAG
AQCYFAIAA
>Mature_168_residues
PANTLRLQREIAALYTGHRGWLHGWLSKKLGCGERAADLVHDTFIRLLARDEPIDAAEPRAFLTTVAQHVLYNHWRRERL
ERAYLDALAQWPEAVAPSPETRAVLFETLVEVDRMLDGLPAVVRRAFLLAQLDGMTHAQIAAELRVSLATVKRYLVKAGA
QCYFAIAA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates the fec genes for iron dicitrate transport (Probable) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790746, Length=150, Percent_Identity=46.6666666666667, Blast_Score=144, Evalue=3e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19012; Mature: 18881

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPANTLRLQREIAALYTGHRGWLHGWLSKKLGCGERAADLVHDTFIRLLARDEPIDAAEP
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH
RAFLTTVAQHVLYNHWRRERLERAYLDALAQWPEAVAPSPETRAVLFETLVEVDRMLDGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCH
PAVVRRAFLLAQLDGMTHAQIAAELRVSLATVKRYLVKAGAQCYFAIAA
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEECC
>Mature Secondary Structure 
PANTLRLQREIAALYTGHRGWLHGWLSKKLGCGERAADLVHDTFIRLLARDEPIDAAEP
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH
RAFLTTVAQHVLYNHWRRERLERAYLDALAQWPEAVAPSPETRAVLFETLVEVDRMLDGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCH
PAVVRRAFLLAQLDGMTHAQIAAELRVSLATVKRYLVKAGAQCYFAIAA
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2254251; 7610040; 9278503; 8052622 [H]