Click here to switch to the map view.

The map label for this gene is pupB [H]

Identifier: 126445906

GI number: 126445906

Start: 1132352

End: 1134997

Strand: Direct

Name: pupB [H]

Synonym: BMA10247_A1162

Alternate gene names: 126445906

Gene position: 1132352-1134997 (Clockwise)

Preceding gene: 126446971

Following gene: 126446063

Centisome position: 48.13

GC content: 71.47

Gene sequence:

>2646_bases
ATGGATTCAATCTGCAATCGCCGCCCCCGCCGCGCGCACGCCGGCGTGTGCGCGGATACGGCGCACGCGCCGGCCGGTTT
GCCCGAGGCGGCTCAGCCCGCCGCGCGGCTCGGCGCAGGCCGGCCGCGCGACGCGGCCGCGCCGCGATGCGCGCGGCAAG
CCACATCGCACACATCGCACGCGTCGCACACGTTGCACGCGCCGTGCATGCCGCAATTCGCCCCGCGCCGCGTCGTCGCG
CGCGTGGCCGCCGCCGCGCTGTTCTCCGCGTGCGCCGCGCCGGGCGTATCGGGCGCGGCCGAGCCGGCCGCCGCGACGCG
CGGGTACGACATTCCGGCGGGCCCGCTCGACGCGGCGCTGACCCGCTTCGGCCGCGAGGCCGGCATCCTGCTGTCGTTCC
CGGGCGAGCTGACCACGGGCCTGCGAAGCCCCGGGCTGCACGGCCGCGCGGATCCGGCCGCGGCGCTCGACCGGCTGCTG
ACGGGCACGGGGCTCGTCGCGCTCCGGCAGCCGAGCGGCGGCTACACGCTCGCCAGGCTGCCCGGGCCGGCCGCCGCCGG
CGCCGATGCCGCGCTCGCGGCCGACACGACGCTGCCCACCGTCGCCGTGCGCGCGAGCGGCCCGCACGCGGACAGCTACC
GGCCGCCGCGCGAGGCGGCGGGGCTGCGCAGCGACGCGCCGCTCGCCGAGGTGCCGCAAGCGGTCGCCATCGTCGCGCAG
CAGGTGCTGCGCGACCAGCGCCCGCGCAATCTCGACGACGCGCTTGCGAACGTGAGCGGCATCACGCAGGGCAACACGCT
CGGCAGCACGCAGGACACGGTGATGAAGCGCGGCTTCGGCGACAACCGCGACGGCTCGGTGATGCGCAACGGAATGCCGA
TCGTGCAGGGCCGCTCGCTGAACGCGACGACGGACAGCGTCGAAGTGCTGAAGGGCCCGGCCTCGCTGCTGTACGGAATC
ATGGACCCGGGCGGCGTGATCAACGTCGTCACGAAGCAGCCGCAGCTCGCGCGCCGCCACGCGATCTCGGCGCTCGGCTC
GACGTACGGCGGCGGCAGGAACGGCGGCGAGCTCACGTTCGACTCGACGGGCGCGATCGGCGAGTCGCGCGTTGCATACC
GGCTGATCGTCGATCAGACGAACGAACAGTATTGGCGCAACTACGGCGAGCACCGCGAGACGCTCGTCGCGCCTTCGCTC
GCGTGGTACGGGCGCGATACGCAGGTGGTGCTGTCGTACGAGTACCGGCGCTTCCTGATGCCGTTCGATCGCGGCACCGC
GCTCGATCCGCGCACGAACGCGCCGCTCGCGATCCCGGCGCGCCGCCGGCTCGACGAGCCGTTCAACGACATGCGCGGCG
AATCGAATCTCGCGCAGCTCGCGATCGATCATCAGCTCGCGCCGGACTGGAAGGTGCACGTCGGCTACAGCTACAACCGG
GAGACCTACGATGCGAACCAGATTCGCATCACGGCGGTCGATCCGCTCAAGGGCACGCTCACGCGCAGCAACGACGCGAC
GCACGGTTCGCGCAGCACCGACAGCTACGGCATCGCGTACGTCGACGGCCGCGTGACGCTCGCCGGGATGCGGCACGACG
TGCAGTTCGGCGTCGACGGCGAATACCGGCAGGTCTACCGCGCGGACATGCTGCGCCAGCCGATCAAGACGCCGTTCAGC
TATCTGAACCCGACGTACGGGCTCGTCCCGCCGTCGACGAGCGTATCGGCCTCCGACAGCGACCAGAGCGACACGCTGCA
CACCGCCTCGCTGTTCTTCCAGGACAGCATCCATCTGAGCGAGCGGTGGATGCTCGTCGGCGGCGCGCGCTGGGTCCGCT
ACAGCCAGCTTGCCGGGCGCGGCCGGCCGTTCCAGGTCAACACGAACCTGAGCGGCACGAAGTGGCTGCCGCGCGCGGGC
ATCGTCTACAAGTGGAACGACGCGCTGTCGCTGTACGGCAGCTACACGCAGTCGCTGAAGCCGACCTCGAAGATCGCGCC
GATGGCGGGCGGCTACGTGATCGACGGCTCGACCGCGCCCGAGGAAGGCGCGTCGTGGGAGCTCGGCGCGAAGCTCGACA
TGCCGGGCGGCCTCGCCGGTACGCTCGCGTTCTTCGACATCGACAAGAAGCACGTGCTCGTCTCGCAATACGACGACGCG
ACGAACCAGACCGCGTGGCGCACGTCCGGCCGCGCGCGCTCGCGCGGGATCGAGCTCGACGTGTCGGGGCGGATCGGTGC
GCGTTGGAACGTGATCGCGAGCTACGCGTACATCGACGCGAAGACGACCGAAGATCCGCTGTACGCGGACAACCGGCTGT
GGAACGTCGCGCGGCACACGGCCTCGCTCGCGGCGGTCTACGACGTGGGCACGGTGCTCGGCGGCGACGACCTGCGCATC
GGCGCGGCGGGGCGCTACGTCGGCGCGCGCCCGGGCGATTCGGCCAACAGCTTCACGCTGCCGGCGTACGCGACCGCCGA
CGCGTTCGCGACCTACGACACGCGGCTCGGCAAGCAGAAGCTGCAGTTCCAGCTCAACGTGAAGAATCTGTTCAACCGCA
CGTATTACCCGTCGAGCGTGAACCGGTTCTTCGTGTCGGTGGGCGACGCGCGGCAGGTGTCGCTGCTGACGACGCTGCAG
TTCTGA

Upstream 100 bases:

>100_bases
CCTCATCGAAATTTTTTCGCCGGGCCTGAGCTGTTTTCGATGCTCGCGTGACATGGGAAATGAAGGCTGCATTCCACCCA
TCGTCAACGAGTCATCGATC

Downstream 100 bases:

>100_bases
TCCGCGTCGCCGTTTTTCGTGGCGGATTTTCTTGGATCGACGCTGCGCGTCGTACGCCGTGCGGCGCACGGCGCGCAGCG
CGCGGAGGCAAGCCGTGCGC

Product: TonB-dependent siderophore receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 881; Mature: 881

Protein sequence:

>881_residues
MDSICNRRPRRAHAGVCADTAHAPAGLPEAAQPAARLGAGRPRDAAAPRCARQATSHTSHASHTLHAPCMPQFAPRRVVA
RVAAAALFSACAAPGVSGAAEPAAATRGYDIPAGPLDAALTRFGREAGILLSFPGELTTGLRSPGLHGRADPAAALDRLL
TGTGLVALRQPSGGYTLARLPGPAAAGADAALAADTTLPTVAVRASGPHADSYRPPREAAGLRSDAPLAEVPQAVAIVAQ
QVLRDQRPRNLDDALANVSGITQGNTLGSTQDTVMKRGFGDNRDGSVMRNGMPIVQGRSLNATTDSVEVLKGPASLLYGI
MDPGGVINVVTKQPQLARRHAISALGSTYGGGRNGGELTFDSTGAIGESRVAYRLIVDQTNEQYWRNYGEHRETLVAPSL
AWYGRDTQVVLSYEYRRFLMPFDRGTALDPRTNAPLAIPARRRLDEPFNDMRGESNLAQLAIDHQLAPDWKVHVGYSYNR
ETYDANQIRITAVDPLKGTLTRSNDATHGSRSTDSYGIAYVDGRVTLAGMRHDVQFGVDGEYRQVYRADMLRQPIKTPFS
YLNPTYGLVPPSTSVSASDSDQSDTLHTASLFFQDSIHLSERWMLVGGARWVRYSQLAGRGRPFQVNTNLSGTKWLPRAG
IVYKWNDALSLYGSYTQSLKPTSKIAPMAGGYVIDGSTAPEEGASWELGAKLDMPGGLAGTLAFFDIDKKHVLVSQYDDA
TNQTAWRTSGRARSRGIELDVSGRIGARWNVIASYAYIDAKTTEDPLYADNRLWNVARHTASLAAVYDVGTVLGGDDLRI
GAAGRYVGARPGDSANSFTLPAYATADAFATYDTRLGKQKLQFQLNVKNLFNRTYYPSSVNRFFVSVGDARQVSLLTTLQ
F

Sequences:

>Translated_881_residues
MDSICNRRPRRAHAGVCADTAHAPAGLPEAAQPAARLGAGRPRDAAAPRCARQATSHTSHASHTLHAPCMPQFAPRRVVA
RVAAAALFSACAAPGVSGAAEPAAATRGYDIPAGPLDAALTRFGREAGILLSFPGELTTGLRSPGLHGRADPAAALDRLL
TGTGLVALRQPSGGYTLARLPGPAAAGADAALAADTTLPTVAVRASGPHADSYRPPREAAGLRSDAPLAEVPQAVAIVAQ
QVLRDQRPRNLDDALANVSGITQGNTLGSTQDTVMKRGFGDNRDGSVMRNGMPIVQGRSLNATTDSVEVLKGPASLLYGI
MDPGGVINVVTKQPQLARRHAISALGSTYGGGRNGGELTFDSTGAIGESRVAYRLIVDQTNEQYWRNYGEHRETLVAPSL
AWYGRDTQVVLSYEYRRFLMPFDRGTALDPRTNAPLAIPARRRLDEPFNDMRGESNLAQLAIDHQLAPDWKVHVGYSYNR
ETYDANQIRITAVDPLKGTLTRSNDATHGSRSTDSYGIAYVDGRVTLAGMRHDVQFGVDGEYRQVYRADMLRQPIKTPFS
YLNPTYGLVPPSTSVSASDSDQSDTLHTASLFFQDSIHLSERWMLVGGARWVRYSQLAGRGRPFQVNTNLSGTKWLPRAG
IVYKWNDALSLYGSYTQSLKPTSKIAPMAGGYVIDGSTAPEEGASWELGAKLDMPGGLAGTLAFFDIDKKHVLVSQYDDA
TNQTAWRTSGRARSRGIELDVSGRIGARWNVIASYAYIDAKTTEDPLYADNRLWNVARHTASLAAVYDVGTVLGGDDLRI
GAAGRYVGARPGDSANSFTLPAYATADAFATYDTRLGKQKLQFQLNVKNLFNRTYYPSSVNRFFVSVGDARQVSLLTTLQ
F
>Mature_881_residues
MDSICNRRPRRAHAGVCADTAHAPAGLPEAAQPAARLGAGRPRDAAAPRCARQATSHTSHASHTLHAPCMPQFAPRRVVA
RVAAAALFSACAAPGVSGAAEPAAATRGYDIPAGPLDAALTRFGREAGILLSFPGELTTGLRSPGLHGRADPAAALDRLL
TGTGLVALRQPSGGYTLARLPGPAAAGADAALAADTTLPTVAVRASGPHADSYRPPREAAGLRSDAPLAEVPQAVAIVAQ
QVLRDQRPRNLDDALANVSGITQGNTLGSTQDTVMKRGFGDNRDGSVMRNGMPIVQGRSLNATTDSVEVLKGPASLLYGI
MDPGGVINVVTKQPQLARRHAISALGSTYGGGRNGGELTFDSTGAIGESRVAYRLIVDQTNEQYWRNYGEHRETLVAPSL
AWYGRDTQVVLSYEYRRFLMPFDRGTALDPRTNAPLAIPARRRLDEPFNDMRGESNLAQLAIDHQLAPDWKVHVGYSYNR
ETYDANQIRITAVDPLKGTLTRSNDATHGSRSTDSYGIAYVDGRVTLAGMRHDVQFGVDGEYRQVYRADMLRQPIKTPFS
YLNPTYGLVPPSTSVSASDSDQSDTLHTASLFFQDSIHLSERWMLVGGARWVRYSQLAGRGRPFQVNTNLSGTKWLPRAG
IVYKWNDALSLYGSYTQSLKPTSKIAPMAGGYVIDGSTAPEEGASWELGAKLDMPGGLAGTLAFFDIDKKHVLVSQYDDA
TNQTAWRTSGRARSRGIELDVSGRIGARWNVIASYAYIDAKTTEDPLYADNRLWNVARHTASLAAVYDVGTVLGGDDLRI
GAAGRYVGARPGDSANSFTLPAYATADAFATYDTRLGKQKLQFQLNVKNLFNRTYYPSSVNRFFVSVGDARQVSLLTTLQ
F

Specific function: Specific receptor for the siderophores ferric pseudobactin BN8 and ferric pseudobactin BN7, iron chelating molecules that allow the organism to extract iron from the environment, especially under iron-restricted conditions [H]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787344, Length=770, Percent_Identity=25.3246753246753, Blast_Score=124, Evalue=3e-29,
Organism=Escherichia coli, GI1786344, Length=251, Percent_Identity=33.4661354581673, Blast_Score=115, Evalue=9e-27,
Organism=Escherichia coli, GI1790743, Length=824, Percent_Identity=21.4805825242718, Blast_Score=88, Evalue=3e-18,
Organism=Escherichia coli, GI1787024, Length=249, Percent_Identity=28.9156626506024, Blast_Score=74, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR011662
- InterPro:   IPR000531
- InterPro:   IPR010917
- InterPro:   IPR010105 [H]

Pfam domain/function: PF07715 Plug; PF07660 STN; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 94663; Mature: 94663

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSICNRRPRRAHAGVCADTAHAPAGLPEAAQPAARLGAGRPRDAAAPRCARQATSHTSH
CCCHHCCCCCHHHCCCCCCCCCCCCCCCHHHCHHHHHCCCCCCCCCCCHHHHHHHCCCCC
ASHTLHAPCMPQFAPRRVVARVAAAALFSACAAPGVSGAAEPAAATRGYDIPAGPLDAAL
CCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCHHHHHH
TRFGREAGILLSFPGELTTGLRSPGLHGRADPAAALDRLLTGTGLVALRQPSGGYTLARL
HHCCCCCCEEEECCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCEEEEEC
PGPAAAGADAALAADTTLPTVAVRASGPHADSYRPPREAAGLRSDAPLAEVPQAVAIVAQ
CCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHH
QVLRDQRPRNLDDALANVSGITQGNTLGSTQDTVMKRGFGDNRDGSVMRNGMPIVQGRSL
HHHHHCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCEECCCCCEEECCCC
NATTDSVEVLKGPASLLYGIMDPGGVINVVTKQPQLARRHAISALGSTYGGGRNGGELTF
CCCCCHHHHHCCCHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEEE
DSTGAIGESRVAYRLIVDQTNEQYWRNYGEHRETLVAPSLAWYGRDTQVVLSYEYRRFLM
CCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHEECCCCEECCCCCEEEEEEEHHHHCC
PFDRGTALDPRTNAPLAIPARRRLDEPFNDMRGESNLAQLAIDHQLAPDWKVHVGYSYNR
CCCCCCCCCCCCCCCEECCHHHHCCCCHHHHCCCCCHHHEEECCCCCCCCEEEEEEEECC
ETYDANQIRITAVDPLKGTLTRSNDATHGSRSTDSYGIAYVDGRVTLAGMRHDVQFGVDG
CCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCCCEEEEECCEEEEEECCEEEEECCCC
EYRQVYRADMLRQPIKTPFSYLNPTYGLVPPSTSVSASDSDQSDTLHTASLFFQDSIHLS
HHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEHEEEECCCCCC
ERWMLVGGARWVRYSQLAGRGRPFQVNTNLSGTKWLPRAGIVYKWNDALSLYGSYTQSLK
CEEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCEEEEECCHHHHHHHHHHCCC
PTSKIAPMAGGYVIDGSTAPEEGASWELGAKLDMPGGLAGTLAFFDIDKKHVLVSQYDDA
CHHHCCCCCCCEEECCCCCCCCCCCEECCCEECCCCCCEEEEEEEECCCCEEEEEECCCC
TNQTAWRTSGRARSRGIELDVSGRIGARWNVIASYAYIDAKTTEDPLYADNRLWNVARHT
CCCCCCCCCCCHHHCCEEEEECCCCCCEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHH
ASLAAVYDVGTVLGGDDLRIGAAGRYVGARPGDSANSFTLPAYATADAFATYDTRLGKQK
HHHHHHHHHHHEECCCCEEEECCCCCCCCCCCCCCCCEECCCEECCCHHHHHHHHCCCEE
LQFQLNVKNLFNRTYYPSSVNRFFVSVGDARQVSLLTTLQF
EEEEEEHHHHHCCCCCCCCCCEEEEEECCCCEEEEEEEECC
>Mature Secondary Structure
MDSICNRRPRRAHAGVCADTAHAPAGLPEAAQPAARLGAGRPRDAAAPRCARQATSHTSH
CCCHHCCCCCHHHCCCCCCCCCCCCCCCHHHCHHHHHCCCCCCCCCCCHHHHHHHCCCCC
ASHTLHAPCMPQFAPRRVVARVAAAALFSACAAPGVSGAAEPAAATRGYDIPAGPLDAAL
CCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCHHHHHH
TRFGREAGILLSFPGELTTGLRSPGLHGRADPAAALDRLLTGTGLVALRQPSGGYTLARL
HHCCCCCCEEEECCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCEEEEEC
PGPAAAGADAALAADTTLPTVAVRASGPHADSYRPPREAAGLRSDAPLAEVPQAVAIVAQ
CCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHH
QVLRDQRPRNLDDALANVSGITQGNTLGSTQDTVMKRGFGDNRDGSVMRNGMPIVQGRSL
HHHHHCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCEECCCCCEEECCCC
NATTDSVEVLKGPASLLYGIMDPGGVINVVTKQPQLARRHAISALGSTYGGGRNGGELTF
CCCCCHHHHHCCCHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEEE
DSTGAIGESRVAYRLIVDQTNEQYWRNYGEHRETLVAPSLAWYGRDTQVVLSYEYRRFLM
CCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHEECCCCEECCCCCEEEEEEEHHHHCC
PFDRGTALDPRTNAPLAIPARRRLDEPFNDMRGESNLAQLAIDHQLAPDWKVHVGYSYNR
CCCCCCCCCCCCCCCEECCHHHHCCCCHHHHCCCCCHHHEEECCCCCCCCEEEEEEEECC
ETYDANQIRITAVDPLKGTLTRSNDATHGSRSTDSYGIAYVDGRVTLAGMRHDVQFGVDG
CCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCCCEEEEECCEEEEEECCEEEEECCCC
EYRQVYRADMLRQPIKTPFSYLNPTYGLVPPSTSVSASDSDQSDTLHTASLFFQDSIHLS
HHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEHEEEECCCCCC
ERWMLVGGARWVRYSQLAGRGRPFQVNTNLSGTKWLPRAGIVYKWNDALSLYGSYTQSLK
CEEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCEEEEECCHHHHHHHHHHCCC
PTSKIAPMAGGYVIDGSTAPEEGASWELGAKLDMPGGLAGTLAFFDIDKKHVLVSQYDDA
CHHHCCCCCCCEEECCCCCCCCCCCEECCCEECCCCCCEEEEEEEECCCCEEEEEECCCC
TNQTAWRTSGRARSRGIELDVSGRIGARWNVIASYAYIDAKTTEDPLYADNRLWNVARHT
CCCCCCCCCCCHHHCCEEEEECCCCCCEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHH
ASLAAVYDVGTVLGGDDLRIGAAGRYVGARPGDSANSFTLPAYATADAFATYDTRLGKQK
HHHHHHHHHHHEECCCCEEEECCCCCCCCCCCCCCCCEECCCEECCCHHHHHHHHCCCEE
LQFQLNVKNLFNRTYYPSSVNRFFVSVGDARQVSLLTTLQF
EEEEEEHHHHHCCCCCCCCCCEEEEEECCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8392140 [H]