Definition | Burkholderia mallei NCTC 10247 chromosome II, complete genome. |
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Accession | NC_009079 |
Length | 2,352,693 |
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The map label for this gene is lsrR [H]
Identifier: 126446674
GI number: 126446674
Start: 2011928
End: 2012947
Strand: Direct
Name: lsrR [H]
Synonym: BMA10247_A2078
Alternate gene names: 126446674
Gene position: 2011928-2012947 (Clockwise)
Preceding gene: 126446178
Following gene: 126446071
Centisome position: 85.52
GC content: 67.94
Gene sequence:
>1020_bases ATGACGCGCACCGCGGTTCATGACGCCGCGCGGCGCGCCGCTCCACTCGATCACGACATGACGAACGAAGAACTCACGCA ACTCGCGAAGTGCTATTACGTCGACGGGTTGACGCAGGAAGAACTCGCGCAGAAGTTCGCGATCTCGCGCCCGAAGGTGG GCCGGCTGCTCAAGCGCGCGATCGAAGAGGGCATCGTCGAGATTCGCGTGCGCCATCATCCGCGCGCGGTACAGGATCTC GAACAGGAACTGGTCACGCGCTTCGGCATCCAGCGCGCGATCATCTCGGTCGACCACAAGGATCAGGACAGCCAGCGCGA GCTGCTCGCGGGGCTCGTCGCGAGCTACCTCGACCGCGTGCTCGCGGACGGGGCGATCGTCGCGGTCGGCATGGGCCGCA ACGTGAGCGCGGTGTCGCGGCACGCGGTATCGACGACGCAGCGCAACTGCTCGTTCGTTTCCGCGATCGGCGGCTCGTAT CGCGGCGGCGAGACGATGAACGCCGACCACATCTGCCGGCGCCTCGCCGCGCGCTTCGGCGGCGAGAGCGAGACGCTGTA CGCGCCGGCGCTCGTCAATGATCCGCAGCTCTTCACCGCGCTGCTCGAGAACGACGTCGTGCGCCAGTCGCTCGACAAGG CGCGCCGCGCGTCGATCGCGCTCGTCGGCATCGGCGACATTCTCGAGGACAGCAACATGGTCCGCATGGGCTGGTTCACG CCCGAGGAAATGGCCGAGGCAAAGCGCGCGGGCGCCGTCGGCGACATCATGGGCTACGACTTCATCGACATCCACGGCCG CCCGGCGACGACGATGCTGCACGGCCGCGTGATCGGGCTCACGCTCGAAGACCTGAAGCGGATTCCGAACGTGATCGCGA CCGCGAGCGAGCCGACGAAAGCCACGGGCATTCTCGGCGCGCTGCGCGCCGGCGTGATCAACACGCTCGCGACCACGCAG TCGATCGCGCAGACGGTGCTGAGCCTCGCGCAGGCCACCGAGACGGCGAGCGCGGCGTAG
Upstream 100 bases:
>100_bases GCATGGCTTAGGGCAGAATTCGACGGCGGCCGCTCGCAGCCGAAGGTGCAGCGGATCGCCGACTACGAACGCCGGGCGGG CCTCACCCAGGCCGGCCCGA
Downstream 100 bases:
>100_bases CGCGCGCTTCATGCGCCGGCCGCGCGAAACGGCCGGCGCACGCGCGCCGCGTGCGTCAGAACGTGTGACGCACGCCGATG CGCACGAGCGTCTGCGTATC
Product: putative sugar-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 339; Mature: 338
Protein sequence:
>339_residues MTRTAVHDAARRAAPLDHDMTNEELTQLAKCYYVDGLTQEELAQKFAISRPKVGRLLKRAIEEGIVEIRVRHHPRAVQDL EQELVTRFGIQRAIISVDHKDQDSQRELLAGLVASYLDRVLADGAIVAVGMGRNVSAVSRHAVSTTQRNCSFVSAIGGSY RGGETMNADHICRRLAARFGGESETLYAPALVNDPQLFTALLENDVVRQSLDKARRASIALVGIGDILEDSNMVRMGWFT PEEMAEAKRAGAVGDIMGYDFIDIHGRPATTMLHGRVIGLTLEDLKRIPNVIATASEPTKATGILGALRAGVINTLATTQ SIAQTVLSLAQATETASAA
Sequences:
>Translated_339_residues MTRTAVHDAARRAAPLDHDMTNEELTQLAKCYYVDGLTQEELAQKFAISRPKVGRLLKRAIEEGIVEIRVRHHPRAVQDL EQELVTRFGIQRAIISVDHKDQDSQRELLAGLVASYLDRVLADGAIVAVGMGRNVSAVSRHAVSTTQRNCSFVSAIGGSY RGGETMNADHICRRLAARFGGESETLYAPALVNDPQLFTALLENDVVRQSLDKARRASIALVGIGDILEDSNMVRMGWFT PEEMAEAKRAGAVGDIMGYDFIDIHGRPATTMLHGRVIGLTLEDLKRIPNVIATASEPTKATGILGALRAGVINTLATTQ SIAQTVLSLAQATETASAA >Mature_338_residues TRTAVHDAARRAAPLDHDMTNEELTQLAKCYYVDGLTQEELAQKFAISRPKVGRLLKRAIEEGIVEIRVRHHPRAVQDLE QELVTRFGIQRAIISVDHKDQDSQRELLAGLVASYLDRVLADGAIVAVGMGRNVSAVSRHAVSTTQRNCSFVSAIGGSYR GGETMNADHICRRLAARFGGESETLYAPALVNDPQLFTALLENDVVRQSLDKARRASIALVGIGDILEDSNMVRMGWFTP EEMAEAKRAGAVGDIMGYDFIDIHGRPATTMLHGRVIGLTLEDLKRIPNVIATASEPTKATGILGALRAGVINTLATTQS IAQTVLSLAQATETASAA
Specific function: In the absence of autoinducer 2 (AI-2), represses transcription of the lsrACDBFGE operon and its own transcription. In the presence of AI-2, lsrR is inactivated by binding phospho- AI-2, leading to the transcription of the lsr genes [H]
COG id: COG2390
COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain
Gene ontology:
Cell location: Cytoplasmic [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sorC transcriptional regulatory family [H]
Homologues:
Organism=Escherichia coli, GI1787791, Length=319, Percent_Identity=29.153605015674, Blast_Score=115, Evalue=4e-27, Organism=Escherichia coli, GI87082414, Length=327, Percent_Identity=26.605504587156, Blast_Score=110, Evalue=1e-25,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007324 - InterPro: IPR011991 [H]
Pfam domain/function: PF04198 Sugar-bind [H]
EC number: NA
Molecular weight: Translated: 36693; Mature: 36562
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRTAVHDAARRAAPLDHDMTNEELTQLAKCYYVDGLTQEELAQKFAISRPKVGRLLKRA CCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHH IEEGIVEIRVRHHPRAVQDLEQELVTRFGIQRAIISVDHKDQDSQRELLAGLVASYLDRV HHCCHHEEHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH LADGAIVAVGMGRNVSAVSRHAVSTTQRNCSFVSAIGGSYRGGETMNADHICRRLAARFG HCCCCEEEEECCCCHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHC GESETLYAPALVNDPQLFTALLENDVVRQSLDKARRASIALVGIGDILEDSNMVRMGWFT CCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCEEEEECHHHHCCCCEEEEECCC PEEMAEAKRAGAVGDIMGYDFIDIHGRPATTMLHGRVIGLTLEDLKRIPNVIATASEPTK HHHHHHHHHCCCHHHHHCCCEEEECCCCCHHEECCEEEEEEHHHHHHHHHHHHCCCCCCH ATGILGALRAGVINTLATTQSIAQTVLSLAQATETASAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TRTAVHDAARRAAPLDHDMTNEELTQLAKCYYVDGLTQEELAQKFAISRPKVGRLLKRA CCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHH IEEGIVEIRVRHHPRAVQDLEQELVTRFGIQRAIISVDHKDQDSQRELLAGLVASYLDRV HHCCHHEEHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH LADGAIVAVGMGRNVSAVSRHAVSTTQRNCSFVSAIGGSYRGGETMNADHICRRLAARFG HCCCCEEEEECCCCHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHC GESETLYAPALVNDPQLFTALLENDVVRQSLDKARRASIALVGIGDILEDSNMVRMGWFT CCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCEEEEECHHHHCCCCEEEEECCC PEEMAEAKRAGAVGDIMGYDFIDIHGRPATTMLHGRVIGLTLEDLKRIPNVIATASEPTK HHHHHHHHHCCCHHHHHCCCEEEECCCCCHHEECCEEEEEEHHHHHHHHHHHHCCCCCCH ATGILGALRAGVINTLATTQSIAQTVLSLAQATETASAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA