Definition | Burkholderia mallei NCTC 10247 chromosome II, complete genome. |
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Accession | NC_009079 |
Length | 2,352,693 |
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The map label for this gene is rpiB [H]
Identifier: 126446178
GI number: 126446178
Start: 2011456
End: 2011950
Strand: Direct
Name: rpiB [H]
Synonym: BMA10247_A2077
Alternate gene names: 126446178
Gene position: 2011456-2011950 (Clockwise)
Preceding gene: 126447521
Following gene: 126446674
Centisome position: 85.5
GC content: 69.7
Gene sequence:
>495_bases ATGAAAGTGGCGATCGGCTGCGACGAAGCGGCCTACGCGCTCAAGGAGTCGATCAAGCGGCACCTGCGCGCGACGCACCC CGAGCTCGAGCTGGTCGACTTCGGCACGCACAGCGCGGACGAGGCGGTGCTGTACCCCGATATCGCGATCGAAGTCGCGC AGCGCGTCGCGGCCGGCGAATTTCCGCGCGCGATCCTGCTGTGCGGCACGGGCATCGGCGTGGCGATCTCCGCGAACAAG GTGCCGGGCATCCGCGCCGCCCAGTGCCATGACACCTACTCGGCCGAGCGCGCGCGGCGCAGCAACGACGCGCAGATCGT CACGATGGGCGCGCGCGTGATCGGCACCGAGCTCGCGAACAGCATCGTCGACGCATGGCTTAGGGCAGAATTCGACGGCG GCCGCTCGCAGCCGAAGGTGCAGCGGATCGCCGACTACGAACGCCGGGCGGGCCTCACCCAGGCCGGCCCGAATGACGCG CACCGCGGTTCATGA
Upstream 100 bases:
>100_bases ATGAGCAAAATTTCGCCCTTTGCCAAATGTTCAGACGGGTCGCTATAATTGCTCAACGCTGCACATTTGCGCACTCATCT TGCCCCTCCGGAGGTTCACC
Downstream 100 bases:
>100_bases CGCCGCGCGGCGCGCCGCTCCACTCGATCACGACATGACGAACGAAGAACTCACGCAACTCGCGAAGTGCTATTACGTCG ACGGGTTGACGCAGGAAGAA
Product: ribose 5-phosphate isomerase
Products: D-Ribulose 5-phosphate [C]
Alternate protein names: NA
Number of amino acids: Translated: 164; Mature: 164
Protein sequence:
>164_residues MKVAIGCDEAAYALKESIKRHLRATHPELELVDFGTHSADEAVLYPDIAIEVAQRVAAGEFPRAILLCGTGIGVAISANK VPGIRAAQCHDTYSAERARRSNDAQIVTMGARVIGTELANSIVDAWLRAEFDGGRSQPKVQRIADYERRAGLTQAGPNDA HRGS
Sequences:
>Translated_164_residues MKVAIGCDEAAYALKESIKRHLRATHPELELVDFGTHSADEAVLYPDIAIEVAQRVAAGEFPRAILLCGTGIGVAISANK VPGIRAAQCHDTYSAERARRSNDAQIVTMGARVIGTELANSIVDAWLRAEFDGGRSQPKVQRIADYERRAGLTQAGPNDA HRGS >Mature_164_residues MKVAIGCDEAAYALKESIKRHLRATHPELELVDFGTHSADEAVLYPDIAIEVAQRVAAGEFPRAILLCGTGIGVAISANK VPGIRAAQCHDTYSAERARRSNDAQIVTMGARVIGTELANSIVDAWLRAEFDGGRSQPKVQRIADYERRAGLTQAGPNDA HRGS
Specific function: In Addition To Its Activity On D-Ribose 5-Phosphate It Probably Also Has Activity On D-Allose 6-Phosphate. [C]
COG id: COG0698
COG function: function code G; Ribose 5-phosphate isomerase RpiB
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the lacAB/rpiB family [H]
Homologues:
Organism=Escherichia coli, GI1790528, Length=148, Percent_Identity=46.6216216216216, Blast_Score=134, Evalue=4e-33,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003500 - InterPro: IPR004785 [H]
Pfam domain/function: PF02502 LacAB_rpiB [H]
EC number: 5.3.1.6 [C]
Molecular weight: Translated: 17621; Mature: 17621
Theoretical pI: Translated: 7.04; Mature: 7.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVAIGCDEAAYALKESIKRHLRATHPELELVDFGTHSADEAVLYPDIAIEVAQRVAAGE CEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEECCHHHHHHHHHHHCCC FPRAILLCGTGIGVAISANKVPGIRAAQCHDTYSAERARRSNDAQIVTMGARVIGTELAN CCCEEEEECCCCEEEEECCCCCCCCCHHHCCHHHHHHHHCCCCCEEEEECHHHHHHHHHH SIVDAWLRAEFDGGRSQPKVQRIADYERRAGLTQAGPNDAHRGS HHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure MKVAIGCDEAAYALKESIKRHLRATHPELELVDFGTHSADEAVLYPDIAIEVAQRVAAGE CEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEECCHHHHHHHHHHHCCC FPRAILLCGTGIGVAISANKVPGIRAAQCHDTYSAERARRSNDAQIVTMGARVIGTELAN CCCEEEEECCCCEEEEECCCCCCCCCHHHCCHHHHHHHHCCCCCEEEEECHHHHHHHHHH SIVDAWLRAEFDGGRSQPKVQRIADYERRAGLTQAGPNDAHRGS HHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): 4.4 {D-ribose} 0.83 {D-ribose} [C]
Substrates: alpha-D-Ribose 5-phosphate [C]
Specific reaction: alpha-D-Ribose 5-phosphate <==> D-Ribulose 5-phosphate [C]
General reaction: Intramolecular oxidoreduction; Isomerization [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]