Click here to switch to the map view.

The map label for this gene is ydhM [C]

Identifier: 126446574

GI number: 126446574

Start: 1283003

End: 1283719

Strand: Direct

Name: ydhM [C]

Synonym: BMA10247_A1312

Alternate gene names: 126446574

Gene position: 1283003-1283719 (Clockwise)

Preceding gene: 126446326

Following gene: 126446843

Centisome position: 54.53

GC content: 74.2

Gene sequence:

>717_bases
ATGGCAAGAACGACACGAACGGACTGGATCGCGGCGGGCCTCGCCGCGCTCGACGACGAAGGCGCGCAAGGCGTGTCGGC
CGACCGCCTCGCGCGACGCCTGGGCGTCACGCGCGGCGCGTTCTATCACCACTTCGGCAGCCGAAAGGCGTTCGTGCTCG
CGCTGCTCGCCGAATGGGAAGCCGCGTACACGACGCAGGCGATCGCGCTGCTGCAAGCCGGCGGCCCGCCCGAGGCGGCG
CTCGACCGGTATCTGGCCGCCGCGTCGCAGATGAATCCGCGCCGCGAGGCGGCAATCCGGACCTGGTCGCTGCACGAGCC
GCTCGTCGCCGAATTCCAGCGCCGCGCGGATCGCGCGCGCCTCGCCGCCGCGCATGCGTTCTGCCGGCAGACGCTGCGCA
GCGAGGCGGATGCGGCGCTGTTCGCGCAGGTGGCCTACCTGTGCTTCGTCGGCGCGCAGCAAAGCCCGCTGCCGATGGGC
CCGGACGATTTCGCGACGCTGTTCCGCTCGCTGTTCGCGCTCGGCGAGCGGCTGTCTGCGCCGGGCCTGCGCGACGACGA
ACGCGCCGTCGGGAACCCGGACGAACGCGAAGGCGCGCGCGGGCGCGACGCCGAGCCGCGAGCCGCGGGCGACGCATCCC
GCGGACGCGACGCCGCCTACGCGCCGGCGCCCGCGCGCGGCCGGCGCGGCGAACGTCAACCGAGAAACAACCGATAG

Upstream 100 bases:

>100_bases
CTCCGACGACGAGTACATGCATGGCGAGCGCGGCGACGAGGGTTGAACGAGGCCGTACAATAGCCGCCACGATCGGACCA
TACAAAGCCTGTACGTTTTC

Downstream 100 bases:

>100_bases
GCGGGATAACCGGTTTCCTCGCGATACGGATAACCGAGCGCCGCGAGAAAGCGATCGAACGCCGCGTGGTCCGCCCGCGG
CACTTGCAGGCCGACGAGGA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: TetR Family Regulatory Protein; Transcriptional Regulator TetR Family; Regulatory Protein TetR

Number of amino acids: Translated: 238; Mature: 237

Protein sequence:

>238_residues
MARTTRTDWIAAGLAALDDEGAQGVSADRLARRLGVTRGAFYHHFGSRKAFVLALLAEWEAAYTTQAIALLQAGGPPEAA
LDRYLAAASQMNPRREAAIRTWSLHEPLVAEFQRRADRARLAAAHAFCRQTLRSEADAALFAQVAYLCFVGAQQSPLPMG
PDDFATLFRSLFALGERLSAPGLRDDERAVGNPDEREGARGRDAEPRAAGDASRGRDAAYAPAPARGRRGERQPRNNR

Sequences:

>Translated_238_residues
MARTTRTDWIAAGLAALDDEGAQGVSADRLARRLGVTRGAFYHHFGSRKAFVLALLAEWEAAYTTQAIALLQAGGPPEAA
LDRYLAAASQMNPRREAAIRTWSLHEPLVAEFQRRADRARLAAAHAFCRQTLRSEADAALFAQVAYLCFVGAQQSPLPMG
PDDFATLFRSLFALGERLSAPGLRDDERAVGNPDEREGARGRDAEPRAAGDASRGRDAAYAPAPARGRRGERQPRNNR
>Mature_237_residues
ARTTRTDWIAAGLAALDDEGAQGVSADRLARRLGVTRGAFYHHFGSRKAFVLALLAEWEAAYTTQAIALLQAGGPPEAAL
DRYLAAASQMNPRREAAIRTWSLHEPLVAEFQRRADRARLAAAHAFCRQTLRSEADAALFAQVAYLCFVGAQQSPLPMGP
DDFATLFRSLFALGERLSAPGLRDDERAVGNPDEREGARGRDAEPRAAGDASRGRDAAYAPAPARGRRGERQPRNNR

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25868; Mature: 25737

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARTTRTDWIAAGLAALDDEGAQGVSADRLARRLGVTRGAFYHHFGSRKAFVLALLAEWE
CCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHH
AAYTTQAIALLQAGGPPEAALDRYLAAASQMNPRREAAIRTWSLHEPLVAEFQRRADRAR
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHH
LAAAHAFCRQTLRSEADAALFAQVAYLCFVGAQQSPLPMGPDDFATLFRSLFALGERLSA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
PGLRDDERAVGNPDEREGARGRDAEPRAAGDASRGRDAAYAPAPARGRRGERQPRNNR
CCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ARTTRTDWIAAGLAALDDEGAQGVSADRLARRLGVTRGAFYHHFGSRKAFVLALLAEWE
CCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHH
AAYTTQAIALLQAGGPPEAALDRYLAAASQMNPRREAAIRTWSLHEPLVAEFQRRADRAR
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHH
LAAAHAFCRQTLRSEADAALFAQVAYLCFVGAQQSPLPMGPDDFATLFRSLFALGERLSA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
PGLRDDERAVGNPDEREGARGRDAEPRAAGDASRGRDAAYAPAPARGRRGERQPRNNR
CCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA