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The map label for this gene is vllY [H]

Identifier: 126446546

GI number: 126446546

Start: 842279

End: 844333

Strand: Reverse

Name: vllY [H]

Synonym: BMA10247_A0891

Alternate gene names: 126446546

Gene position: 844333-842279 (Counterclockwise)

Preceding gene: 126445601

Following gene: 126447063

Centisome position: 35.89

GC content: 70.66

Gene sequence:

>2055_bases
ATGCAGCGTTCGATCGCCACCGTCTCGCTATCGGGCACGCTCGTCGAGAAGCTCCGCGCGATTCGCGCCGCCGGCTTCGA
CGGCGTCGAGATCTTCGAGAACGACTTGCTCTACTTCGACGGCTCGCCCGCCGACGTGCGCGCCATCGCCGCTGATCTCG
GCCTCGCCATCGTGCTGTTCCAGCCGTTTCGCGATTTCGAGGGCGTGCCGCCCGAGCGCCTCGCGCGCAATCTCGAGCGC
GCGAAGCGCAAGTTCGAGCTGATGCACGCGCTCGGCGCGAACCGCATGCTCGTGTGCAGCAACATGTCGCCGGACGCGAT
CGGCGACGACGCACTGCTCATCGACCAGTTGGGCGCGCTCGCGCGCGCCGCGCAGGCGGCGGGCGTCGTCGCCGCGTACG
AGGCGCTGGCATGGGGTCGGAACGTGAAGACTTATGGCCATGCGTGGCGGCTCGTCGACGCGGTGAACCATCCGAGCCTC
GGGCTTGCGCTCGACAGCTTCCATACGCTGTCGCTCGGCGATTCGCCGGACGGCATCGCGCGCATTCCCGGCGAGCGGAT
CGCGTTCGTGCAGATCGCCGACGCGCCGAAGCTCGCGATGGACGTGCTCGAATGGAGCCGGCATTACCGGTCGTTTCCGG
GCCAGGGCGATTTCGACCTCGCGGGATTCACCGCGCGCGTGATCGAATCGGGCTACGCCGGGCCGCTGTCGCTCGAGATC
TTCAACGACGGCTTTCGCGCTGCGCCGACCGCGCTGACGGCCGCGGACGGCTACCGGTCGCTGCTGTATCTCGAGGAGAC
CACGCGCGAGCGGCTCGCGTGCGACGCGCGGCGCGCACGTCGGGCGGGCGGCGCGCCGGGAACGGGCGAAACGCGCGGCG
AGCGCGAAAGACACGGCGCGCACGGCGAACGTGGCGAACACCGCGCACACGATAAGGACGACAAGCCAGACGACAAGCGC
GGCGGCCCCGACGAACGCGAAAGCCGCGCGGCGCACCCGCGCCCCGCGCCGCCGCTCTTCGCGCCGCCGCCCGCGCCCGC
GCACGTCGGCTTTCAGTTCATCGAATTCGCGGTCGACGCGGCCGCCGCCGAGAACGTCGCCGGCTGGCTCGGCAAGCTGC
GCTTTCGGCGCGCGGGCCGTCACCGCTCGAAGGACGTGACGCTGTATCAGCACGGCGCGGCGTCGATCGTGTTGAACGCC
GAGCGCGATTCGTTCGCCGACGCGTTCTTCCAGGAGCACGGCCTGTCGCTGTGCGCGTCGGCGTTTCGCGTCGACGATGC
GCGTCTCGCGTTCGAGCGCGCGGCGGGCTACGGCTACGCGCCGTTCTCGGGCCGCGTCGGCCCGAACGAGCGCGTGCTGC
CGAGCGTGCGCGCGCCCGACGGCAGCCTGAACTACTTCGTCGACGAGGCGCCCGGCGCGCCGACGCTGTACGAATCGGAT
TTCGTGCTGACCGACATCGACGGGCCAAGCGAAGTCGGCCCGCTCGCCGGCATCGATCACGTGTGCCTCGCGCTGCCCGC
CGACGCGCTCGATACGTGGGTGCTGTTCTTCAAGACCGCGTTCGGCTTCGAGGCCGAGCGCAACTGGCTCGTGCCGGACC
CGTACGGGCTCGTGCGCAGCCGCGCGGTGCGCAGCCCGGACGGCTCGGTGCGCATCGCGCTCAATGCGTCGGTGGACCGG
CATACGGCCGTCGTCCGGTCGCTCGAGCGCTATCGCGGCACGGGGCTCAATCATGTCGCGTTCCGCGCGGACGACATCGT
CGCGGCGATCGCCGAATTCGCCGCGGACGGCGTGCCGTTCCTGCGGATTCCGCGCAATTACTACGACGATCTCGCCGCAC
GCTACGCGCTGCCCGACGAGACGATCGACACGCTGCGCCGCCATCACCTGCTGTACGACCGCGACGACGCGGGCGGCGAA
TTCCTGCATGCGTACACCGAGCTCGTCGACGGCCGCTTCTCGTTCGAGATCGTCGAGCGGCGCGGCGGCTACGACGGATA
CGGCGCGGCGAACGCAGCCGTGCGGCTCGCCGCGCAGGCGCAGCGCAGGGGGTAA

Upstream 100 bases:

>100_bases
CTCCGACCTTCGACGGCACGCGGGCGGCGGCGCGGCGTTCGGCCTCCGGCTGCGCGCCGCGTCCGGGCGCGAGCCGTCCC
ACATCCGCAGGACATTCATC

Downstream 100 bases:

>100_bases
GCGCGGCGGGCGGTGGACGGCAAGCAGCGGGCGACGGCGGCGACAGTAGTCGTCGTTGGGCGTTGGGCGTTGGGCGTGGG
GCGCCGTCCGTAACGTGGAT

Product: AP endonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 684; Mature: 684

Protein sequence:

>684_residues
MQRSIATVSLSGTLVEKLRAIRAAGFDGVEIFENDLLYFDGSPADVRAIAADLGLAIVLFQPFRDFEGVPPERLARNLER
AKRKFELMHALGANRMLVCSNMSPDAIGDDALLIDQLGALARAAQAAGVVAAYEALAWGRNVKTYGHAWRLVDAVNHPSL
GLALDSFHTLSLGDSPDGIARIPGERIAFVQIADAPKLAMDVLEWSRHYRSFPGQGDFDLAGFTARVIESGYAGPLSLEI
FNDGFRAAPTALTAADGYRSLLYLEETTRERLACDARRARRAGGAPGTGETRGERERHGAHGERGEHRAHDKDDKPDDKR
GGPDERESRAAHPRPAPPLFAPPPAPAHVGFQFIEFAVDAAAAENVAGWLGKLRFRRAGRHRSKDVTLYQHGAASIVLNA
ERDSFADAFFQEHGLSLCASAFRVDDARLAFERAAGYGYAPFSGRVGPNERVLPSVRAPDGSLNYFVDEAPGAPTLYESD
FVLTDIDGPSEVGPLAGIDHVCLALPADALDTWVLFFKTAFGFEAERNWLVPDPYGLVRSRAVRSPDGSVRIALNASVDR
HTAVVRSLERYRGTGLNHVAFRADDIVAAIAEFAADGVPFLRIPRNYYDDLAARYALPDETIDTLRRHHLLYDRDDAGGE
FLHAYTELVDGRFSFEIVERRGGYDGYGAANAAVRLAAQAQRRG

Sequences:

>Translated_684_residues
MQRSIATVSLSGTLVEKLRAIRAAGFDGVEIFENDLLYFDGSPADVRAIAADLGLAIVLFQPFRDFEGVPPERLARNLER
AKRKFELMHALGANRMLVCSNMSPDAIGDDALLIDQLGALARAAQAAGVVAAYEALAWGRNVKTYGHAWRLVDAVNHPSL
GLALDSFHTLSLGDSPDGIARIPGERIAFVQIADAPKLAMDVLEWSRHYRSFPGQGDFDLAGFTARVIESGYAGPLSLEI
FNDGFRAAPTALTAADGYRSLLYLEETTRERLACDARRARRAGGAPGTGETRGERERHGAHGERGEHRAHDKDDKPDDKR
GGPDERESRAAHPRPAPPLFAPPPAPAHVGFQFIEFAVDAAAAENVAGWLGKLRFRRAGRHRSKDVTLYQHGAASIVLNA
ERDSFADAFFQEHGLSLCASAFRVDDARLAFERAAGYGYAPFSGRVGPNERVLPSVRAPDGSLNYFVDEAPGAPTLYESD
FVLTDIDGPSEVGPLAGIDHVCLALPADALDTWVLFFKTAFGFEAERNWLVPDPYGLVRSRAVRSPDGSVRIALNASVDR
HTAVVRSLERYRGTGLNHVAFRADDIVAAIAEFAADGVPFLRIPRNYYDDLAARYALPDETIDTLRRHHLLYDRDDAGGE
FLHAYTELVDGRFSFEIVERRGGYDGYGAANAAVRLAAQAQRRG
>Mature_684_residues
MQRSIATVSLSGTLVEKLRAIRAAGFDGVEIFENDLLYFDGSPADVRAIAADLGLAIVLFQPFRDFEGVPPERLARNLER
AKRKFELMHALGANRMLVCSNMSPDAIGDDALLIDQLGALARAAQAAGVVAAYEALAWGRNVKTYGHAWRLVDAVNHPSL
GLALDSFHTLSLGDSPDGIARIPGERIAFVQIADAPKLAMDVLEWSRHYRSFPGQGDFDLAGFTARVIESGYAGPLSLEI
FNDGFRAAPTALTAADGYRSLLYLEETTRERLACDARRARRAGGAPGTGETRGERERHGAHGERGEHRAHDKDDKPDDKR
GGPDERESRAAHPRPAPPLFAPPPAPAHVGFQFIEFAVDAAAAENVAGWLGKLRFRRAGRHRSKDVTLYQHGAASIVLNA
ERDSFADAFFQEHGLSLCASAFRVDDARLAFERAAGYGYAPFSGRVGPNERVLPSVRAPDGSLNYFVDEAPGAPTLYESD
FVLTDIDGPSEVGPLAGIDHVCLALPADALDTWVLFFKTAFGFEAERNWLVPDPYGLVRSRAVRSPDGSVRIALNASVDR
HTAVVRSLERYRGTGLNHVAFRADDIVAAIAEFAADGVPFLRIPRNYYDDLAARYALPDETIDTLRRHHLLYDRDDAGGE
FLHAYTELVDGRFSFEIVERRGGYDGYGAANAAVRLAAQAQRRG

Specific function: Unknown

COG id: COG3185

COG function: function code ER; 4-hydroxyphenylpyruvate dioxygenase and related hemolysins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 4HPPD family [H]

Homologues:

Organism=Caenorhabditis elegans, GI17555220, Length=192, Percent_Identity=29.1666666666667, Blast_Score=79, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005956
- InterPro:   IPR004360 [H]

Pfam domain/function: PF00903 Glyoxalase [H]

EC number: NA

Molecular weight: Translated: 74573; Mature: 74573

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: PS00063 ALDOKETO_REDUCTASE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRSIATVSLSGTLVEKLRAIRAAGFDGVEIFENDLLYFDGSPADVRAIAADLGLAIVLF
CCCCEEEEEECHHHHHHHHHHHHCCCCCHHHHCCCEEEECCCCHHHHHHHHHHCEEEEEE
QPFRDFEGVPPERLARNLERAKRKFELMHALGANRMLVCSNMSPDAIGDDALLIDQLGAL
CCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHH
ARAAQAAGVVAAYEALAWGRNVKTYGHAWRLVDAVNHPSLGLALDSFHTLSLGDSPDGIA
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEECCCEEEECCCCCCCCE
RIPGERIAFVQIADAPKLAMDVLEWSRHYRSFPGQGDFDLAGFTARVIESGYAGPLSLEI
ECCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCEEEEE
FNDGFRAAPTALTAADGYRSLLYLEETTRERLACDARRARRAGGAPGTGETRGERERHGA
ECCCCCCCCCCEECCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCC
HGERGEHRAHDKDDKPDDKRGGPDERESRAAHPRPAPPLFAPPPAPAHVGFQFIEFAVDA
CCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
AAAENVAGWLGKLRFRRAGRHRSKDVTLYQHGAASIVLNAERDSFADAFFQEHGLSLCAS
HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHH
AFRVDDARLAFERAAGYGYAPFSGRVGPNERVLPSVRAPDGSLNYFVDEAPGAPTLYESD
HHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEECCC
FVLTDIDGPSEVGPLAGIDHVCLALPADALDTWVLFFKTAFGFEAERNWLVPDPYGLVRS
EEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
RAVRSPDGSVRIALNASVDRHTAVVRSLERYRGTGLNHVAFRADDIVAAIAEFAADGVPF
HHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCCE
LRIPRNYYDDLAARYALPDETIDTLRRHHLLYDRDDAGGEFLHAYTELVDGRFSFEIVER
EECCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEEEHHH
RGGYDGYGAANAAVRLAAQAQRRG
CCCCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQRSIATVSLSGTLVEKLRAIRAAGFDGVEIFENDLLYFDGSPADVRAIAADLGLAIVLF
CCCCEEEEEECHHHHHHHHHHHHCCCCCHHHHCCCEEEECCCCHHHHHHHHHHCEEEEEE
QPFRDFEGVPPERLARNLERAKRKFELMHALGANRMLVCSNMSPDAIGDDALLIDQLGAL
CCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHH
ARAAQAAGVVAAYEALAWGRNVKTYGHAWRLVDAVNHPSLGLALDSFHTLSLGDSPDGIA
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEECCCEEEECCCCCCCCE
RIPGERIAFVQIADAPKLAMDVLEWSRHYRSFPGQGDFDLAGFTARVIESGYAGPLSLEI
ECCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCEEEEE
FNDGFRAAPTALTAADGYRSLLYLEETTRERLACDARRARRAGGAPGTGETRGERERHGA
ECCCCCCCCCCEECCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCC
HGERGEHRAHDKDDKPDDKRGGPDERESRAAHPRPAPPLFAPPPAPAHVGFQFIEFAVDA
CCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
AAAENVAGWLGKLRFRRAGRHRSKDVTLYQHGAASIVLNAERDSFADAFFQEHGLSLCAS
HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHH
AFRVDDARLAFERAAGYGYAPFSGRVGPNERVLPSVRAPDGSLNYFVDEAPGAPTLYESD
HHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEECCC
FVLTDIDGPSEVGPLAGIDHVCLALPADALDTWVLFFKTAFGFEAERNWLVPDPYGLVRS
EEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
RAVRSPDGSVRIALNASVDRHTAVVRSLERYRGTGLNHVAFRADDIVAAIAEFAADGVPF
HHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCCE
LRIPRNYYDDLAARYALPDETIDTLRRHHLLYDRDDAGGEFLHAYTELVDGRFSFEIVER
EECCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEEEHHH
RGGYDGYGAANAAVRLAAQAQRRG
CCCCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA