Click here to switch to the map view.

The map label for this gene is xerD [H]

Identifier: 126446520

GI number: 126446520

Start: 1177110

End: 1178807

Strand: Reverse

Name: xerD [H]

Synonym: BMA10247_A1208

Alternate gene names: 126446520

Gene position: 1178807-1177110 (Counterclockwise)

Preceding gene: 126445857

Following gene: 126446579

Centisome position: 50.1

GC content: 67.84

Gene sequence:

>1698_bases
GTGATCATGAAAACGCGTGAGACCCATTCCATCGACGAGAACAATCCCGACTTCCCCGACGAAGCGGAGCTCGCCGCACT
GCGCGGCTGGTACGCCGGCCTGGACACGCGTGCCGCCGTGGCCCGCTATCTGGGCGATCGGCGAGCAGCCGGTGGGTCAT
CGCGTGGCATTCTCGGCCGCATTCGTCAGCGACTTGTCGCGTTCGCACGAAGCCGCCATCGCGTGGACCTGGCGGCCGCG
CTCGTTGCTCGCCCGACGAGCGCGTCGGCCGCTAGCGTCGCCCGCGTGATCGAGGCGCTCCGCAATCTGCCCGTGCCGGC
GCCGCTGATCACCGACGCCGTCGAGATGTGGTTGCCCCCGCGCATCGTCCAGGCGCTGCACGGGCACGATATCCGGACGC
TGGCCGACCTAACCGTACGGATTCCGCGACGCCGCCGCTGGTGGTCGGCGATCGATGGTCTAGGCGTCGCCGGCGCGCGA
CATGTCGAAGCATTTTTCGCCGCGCACCCGGTGCTGACCGACCGGGCACGCGCGTTGATCACCGCGACGCCGTCCGGCGT
CATCGTGCCGTGGGAGCAGATTCGTGTGCCGCATGAGGTCGATGGCTCGCGCGGGCAGTTCCGGGCGCCACAGGTGGCCT
GCCTGCTGAGCGCGTCGAACGACTATGAGGCCATTCAGTCCTGGCTGTCGTTGCACGAGTCTGCCGCAACGCAGCGTGCC
TATCGGAAAGAGGCCGAGCGGCTGATCCTGTGGGCCATTGTCGAACGCGGCCGGCCGTTGTCGTCGCTGACAACCGACGA
TGCGATCGCCTATCGCGGTTTCTTGCGGCGACCAACGCCACGCGAGCGTTGGGTCGGACCGTCGCGGCCGCGGCACAGTG
TCGAATGGCGGCCGTTCAGCGGCCCACTGTCGGCACGTTCGGCAGCGTATGCGCTCACGGTCCTGTCGGCGATGTTCCGC
TGGCTGGTCGAGCAGCGCTATGTGCTGGCGAATCCGTTTGCGGGCGTCAAGGTGCGCGGTGCCGCGGCGCGTACGGGGCT
GGATGTTGCCCGTGGCTTCACCGAAGGCGAGTGGCTGTTGATCCGCGCACTGGCTGACGGGCTGGAGTGGTCGTATGGCT
GGGGCGCGCCGGCCGCGCACCGTCTGCGCTTCCTACTCGACTTCGGTTACGCGACCGGCCTGCGTGCCAGTGAGTTCGTC
GGCGCCACACTCGGCGACATCCGGCGCGACGAACATGGTGATCACTGGCTGCACGTGATCGGCAAGGGCGGCAAACTCGG
CAAGGTGGCGTTGCCTGCGCTGGCTCGATCCGCGCTCGATCAGTATCTCGTACAGCGAGGGCTGCCGGTGACGCCGTCCC
GCTGGGACCCAGCCACACCGCTGGTCGCGAACCTCGAGGAGGACGGCGCCGGCATCGAGAGTACACGGCTCTGGCGCGTG
CTGCGGCGCTTCTTTCGGTTTGCGGCCGACGCGATCCAGGATGAACGGCCCGCAACGGCCGAGAAGCTTCGGCGCGCAAG
TCCACACTGGATGCGGCACACACACGCGACGCACGCGCTGGCCCGTGGCGCCGAGCTGATCATGGTGCGCGACAATCTCC
GTCATGCGTCGATCTCGACGACGTCGACCTACCTGCACGGCGATGAGATCCAGCGGGCGCGGCAGTTCGATCAGGCATTT
GAGGCACGCAAAGTCTAG

Upstream 100 bases:

>100_bases
AACCGCCTGACGCTTGCAGTGAATGAAAATTGAAAGGTCGATGATGGAGATGGACAGATAAGAGTTATTATCTGCCCGTC
ATCGAAATGCATCTAAACTG

Downstream 100 bases:

>100_bases
CGTACGGCCGACTCGATCGAGGGGCGAAATTCCCCTTATAGATCAGTTGGATAAGGCAATTTTGGCGAAAATTTCACGAA
TCCCGGCCGACCCTCAGATA

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 565; Mature: 565

Protein sequence:

>565_residues
MIMKTRETHSIDENNPDFPDEAELAALRGWYAGLDTRAAVARYLGDRRAAGGSSRGILGRIRQRLVAFARSRHRVDLAAA
LVARPTSASAASVARVIEALRNLPVPAPLITDAVEMWLPPRIVQALHGHDIRTLADLTVRIPRRRRWWSAIDGLGVAGAR
HVEAFFAAHPVLTDRARALITATPSGVIVPWEQIRVPHEVDGSRGQFRAPQVACLLSASNDYEAIQSWLSLHESAATQRA
YRKEAERLILWAIVERGRPLSSLTTDDAIAYRGFLRRPTPRERWVGPSRPRHSVEWRPFSGPLSARSAAYALTVLSAMFR
WLVEQRYVLANPFAGVKVRGAAARTGLDVARGFTEGEWLLIRALADGLEWSYGWGAPAAHRLRFLLDFGYATGLRASEFV
GATLGDIRRDEHGDHWLHVIGKGGKLGKVALPALARSALDQYLVQRGLPVTPSRWDPATPLVANLEEDGAGIESTRLWRV
LRRFFRFAADAIQDERPATAEKLRRASPHWMRHTHATHALARGAELIMVRDNLRHASISTTSTYLHGDEIQRARQFDQAF
EARKV

Sequences:

>Translated_565_residues
MIMKTRETHSIDENNPDFPDEAELAALRGWYAGLDTRAAVARYLGDRRAAGGSSRGILGRIRQRLVAFARSRHRVDLAAA
LVARPTSASAASVARVIEALRNLPVPAPLITDAVEMWLPPRIVQALHGHDIRTLADLTVRIPRRRRWWSAIDGLGVAGAR
HVEAFFAAHPVLTDRARALITATPSGVIVPWEQIRVPHEVDGSRGQFRAPQVACLLSASNDYEAIQSWLSLHESAATQRA
YRKEAERLILWAIVERGRPLSSLTTDDAIAYRGFLRRPTPRERWVGPSRPRHSVEWRPFSGPLSARSAAYALTVLSAMFR
WLVEQRYVLANPFAGVKVRGAAARTGLDVARGFTEGEWLLIRALADGLEWSYGWGAPAAHRLRFLLDFGYATGLRASEFV
GATLGDIRRDEHGDHWLHVIGKGGKLGKVALPALARSALDQYLVQRGLPVTPSRWDPATPLVANLEEDGAGIESTRLWRV
LRRFFRFAADAIQDERPATAEKLRRASPHWMRHTHATHALARGAELIMVRDNLRHASISTTSTYLHGDEIQRARQFDQAF
EARKV
>Mature_565_residues
MIMKTRETHSIDENNPDFPDEAELAALRGWYAGLDTRAAVARYLGDRRAAGGSSRGILGRIRQRLVAFARSRHRVDLAAA
LVARPTSASAASVARVIEALRNLPVPAPLITDAVEMWLPPRIVQALHGHDIRTLADLTVRIPRRRRWWSAIDGLGVAGAR
HVEAFFAAHPVLTDRARALITATPSGVIVPWEQIRVPHEVDGSRGQFRAPQVACLLSASNDYEAIQSWLSLHESAATQRA
YRKEAERLILWAIVERGRPLSSLTTDDAIAYRGFLRRPTPRERWVGPSRPRHSVEWRPFSGPLSARSAAYALTVLSAMFR
WLVEQRYVLANPFAGVKVRGAAARTGLDVARGFTEGEWLLIRALADGLEWSYGWGAPAAHRLRFLLDFGYATGLRASEFV
GATLGDIRRDEHGDHWLHVIGKGGKLGKVALPALARSALDQYLVQRGLPVTPSRWDPATPLVANLEEDGAGIESTRLWRV
LRRFFRFAADAIQDERPATAEKLRRASPHWMRHTHATHALARGAELIMVRDNLRHASISTTSTYLHGDEIQRARQFDQAF
EARKV

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=338, Percent_Identity=27.5147928994083, Blast_Score=72, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 62944; Mature: 62944

Theoretical pI: Translated: 11.17; Mature: 11.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIMKTRETHSIDENNPDFPDEAELAALRGWYAGLDTRAAVARYLGDRRAAGGSSRGILGR
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHH
IRQRLVAFARSRHRVDLAAALVARPTSASAASVARVIEALRNLPVPAPLITDAVEMWLPP
HHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCH
RIVQALHGHDIRTLADLTVRIPRRRRWWSAIDGLGVAGARHVEAFFAAHPVLTDRARALI
HHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHCCCEEE
TATPSGVIVPWEQIRVPHEVDGSRGQFRAPQVACLLSASNDYEAIQSWLSLHESAATQRA
EECCCCEEECHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHH
YRKEAERLILWAIVERGRPLSSLTTDDAIAYRGFLRRPTPRERWVGPSRPRHSVEWRPFS
HHHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCC
GPLSARSAAYALTVLSAMFRWLVEQRYVLANPFAGVKVRGAAARTGLDVARGFTEGEWLL
CCCHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCEEEECHHHHHHHHHHCCCCCCCHHH
IRALADGLEWSYGWGAPAAHRLRFLLDFGYATGLRASEFVGATLGDIRRDEHGDHWLHVI
HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEEE
GKGGKLGKVALPALARSALDQYLVQRGLPVTPSRWDPATPLVANLEEDGAGIESTRLWRV
ECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHH
LRRFFRFAADAIQDERPATAEKLRRASPHWMRHTHATHALARGAELIMVRDNLRHASIST
HHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC
TSTYLHGDEIQRARQFDQAFEARKV
CHHEECHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIMKTRETHSIDENNPDFPDEAELAALRGWYAGLDTRAAVARYLGDRRAAGGSSRGILGR
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHH
IRQRLVAFARSRHRVDLAAALVARPTSASAASVARVIEALRNLPVPAPLITDAVEMWLPP
HHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCH
RIVQALHGHDIRTLADLTVRIPRRRRWWSAIDGLGVAGARHVEAFFAAHPVLTDRARALI
HHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHCCCEEE
TATPSGVIVPWEQIRVPHEVDGSRGQFRAPQVACLLSASNDYEAIQSWLSLHESAATQRA
EECCCCEEECHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHH
YRKEAERLILWAIVERGRPLSSLTTDDAIAYRGFLRRPTPRERWVGPSRPRHSVEWRPFS
HHHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCC
GPLSARSAAYALTVLSAMFRWLVEQRYVLANPFAGVKVRGAAARTGLDVARGFTEGEWLL
CCCHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCEEEECHHHHHHHHHHCCCCCCCHHH
IRALADGLEWSYGWGAPAAHRLRFLLDFGYATGLRASEFVGATLGDIRRDEHGDHWLHVI
HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEEE
GKGGKLGKVALPALARSALDQYLVQRGLPVTPSRWDPATPLVANLEEDGAGIESTRLWRV
ECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHH
LRRFFRFAADAIQDERPATAEKLRRASPHWMRHTHATHALARGAELIMVRDNLRHASIST
HHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC
TSTYLHGDEIQRARQFDQAFEARKV
CHHEECHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12840036 [H]