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The map label for this gene is ydeP [H]

Identifier: 126446202

GI number: 126446202

Start: 1011280

End: 1013646

Strand: Reverse

Name: ydeP [H]

Synonym: BMA10247_A1071

Alternate gene names: 126446202

Gene position: 1013646-1011280 (Counterclockwise)

Preceding gene: 126447808

Following gene: 126446538

Centisome position: 43.08

GC content: 68.95

Gene sequence:

>2367_bases
TTGCGTCGCCGTCCCCAACCGGCGCTCAGACATTTCAACGACATGAAAACCAAGGAACCCGACGCGCGCATCGAGCCGTA
CGCCCATCCGGCGGGCGGCTGGGGCGCGCTCAAGTACGTCGCGATCAACCTGTTCAAGGAAAAGGTGCCGGGCGGCAATT
ACCGCGCGCTGCTGCGCCAGAACCAGCCGGACGGCTTCGACTGCCCGGGCTGCGCGTGGCCCGATCGCGAGCATGCCTCG
ACGTTCGAATTCTGCGAGAACGGCGTGAAGGCCGTCGCGGCCGAGGCGACCGCCAAGCACGTGACGCCCGCGTTCTTCGC
CGAGCATACGGTGAGCGCGCTCTTCGATCAGTCCGACTACGCGCTCGAGCAGCACGGCCGCCTGACCGACCCGATGGTCT
ACGACGCCGCGACCGACCGCTACGTGCCGATCGCCTGGAACGCGGCGTTCGAGCTGATCGCGAACCACCTGCGCGCGCTC
GGCGAGCCGAACCGCGCGGCGTTCTACACGTCGGGCCGCGCGAGCAACGAGGCCGCGTTCCTGTATCAGTTGCTCGTGCG
CTACTACGGCACCAACAACTTCCCCGACTGCTCGAACATGTGCCACGAGGCGACGAGCCGCGGGCTGCCGGCCACGGTCG
GCGTCGGCAAGGGCACGGTCACGCTCGATGATTTCGAGCAGGCCGACACGCTGCTGATCTTCGGCCAGAACCCGGCGACG
AACCATCCGCGCATGATGGGCGAGCTGCGCGCGTGCGCGAAGCACGGCGCGACGATCGTGTCGATCAATCCGCTGAAGGA
GCGCGGGCTCGAGCGCTTCGCGAGCCCGCAGCATCCGGCCGAGATGCTGACGATGTCGAGCACGCCGATCGCGTCGACGT
TCGTGCAGCCTCGCGTCGGCGGCGATCTCGCGCTCATCAAGGGCGTCGCCAAGCGCGTGCTCGAGCTCGACGACGCGGCG
CGCGAACGCGGCGGCGCGCGCGTGCTCGACGTCGACTTCATCGCCGCGCACACGGCCGGCTTCGACACGTTCGCGGCCGA
CCTGCGCGCGCAGGACTGGGCCGCGCTCGTCGGCGAAAGCGGCGTGCCGCGCGAGCAGATCGATGCGCTCGCGCGCATCT
ACGTGCGCGGCGAACGCGTGATCGCGACGTGGGGAATGGGCCTCACGCAGCACAAGCACTCGGTCGCGACGGTGCACATG
CTGTCGAACCTGATGCTGATGCGCGGCAACGTCGGCCGCCCGGGCGCGGGCCTCTGCCCCGTGCGCGGGCATTCGAACGT
GCAGGGCAACCGCACGGTCGGCATCGAGGAGAAGCCTTCCGACGCGTTCCTCGAGCGGCTCGGCCGCGTATTCGATTTCG
CGCCGCCGCGCGGCCACGGCTACGACGTCGTCGAGACGATCGAGGCGATGCTCGACGGCCGCATCGGCGTGTTCATCGGC
CTCGGCGGCAACTTCGCGATGGCGACGCCCGATACGCCGCGCACGTGGCAAGGGCTGCGCCGTTGCGGCCTGACCGTGCA
CATCACGACGAAGCTCAACCGCAGCCATCTCGTGCATGGCCGTGAGGCGCTGATCCTGCCGACGCTCGGCCGCACCGAGA
TCGATCTGCAGAACGGCGTCGCGCAGGGCGTGAGCGTCGAGGACTCGATGTGCATGGTCCATGCGTCGTACGGGATGAAC
CCGCCGGCGTCGCCGAACCTGCTGTCGGAGGTCGCGATCGTCGCGCGGCTCGGGCACGCGCTCTTCGGCGGCGACAAGAT
CGACTGGCTCGGCTATATGAACGACTACGCGAAGATCCGCGACGCGATCGAAGCGAGCATCGAGGGTTTCGACGACTACA
ACGCGCGAATCGCGCGGCCGGGCGGCTTCCATCTGCGGATCGCGTCGCGCGAGCGCGAATGGCTCACGCCGAGCGGCCGC
GCGAACTTCATCGTCCATGCGCTGCCCGCCGACACGCCGATCCAGCGCGCCCGCGCGCGCCACGGCAAGCGGCTGATGAC
GCTGATGACGACGCGCTCGCACGATCAGTACAACACGACGATCTACGCGCTCGACGACCGCTATCGCGGCGTGTTCGGCG
AGCGGCGCGTCGTGTTCGCGCATCCCGACGATCTCGCGATGCTCGGCTTCGAGGCGGGCGAGCGCGTGGATCTCGAAACG
GTATGGGACGACGGAATCGAGCGGCGCGTCGCGGGCTTTCTGCTCGTCGCGTACGACATTCCGCGCGGCTGCCTCGGCGC
GTACTACCCGGAGACGAATCCGCTCGTGCCGCTCGACAGCGTGGGCGACGTCTGCAACACGCCGACGTCGAAGTCGATTC
CGGTGCTGATGCACCGGTCGGCGGGCGACGCGGCGCACGCGGCATGA

Upstream 100 bases:

>100_bases
GTACAGTTTATTGACGCATCGCACCATAACCAAGAACTGTGCTCTTTTTCTTTCCGGCAAGGTGTGCTCCCGCCCGGTCT
CGCCGCGCGCGTACGCTTCG

Downstream 100 bases:

>100_bases
CGCGAGGCCCGCATGATCGTCAGACCGCGCGAGCACGGGTTCCGGATGCTGTTCGTCTGGAACGGTTCGGTGCTCAAATC
GATTCTGCCGCAGCTTGCGC

Product: molybdopterin oxidoreductase, alpha subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 788; Mature: 788

Protein sequence:

>788_residues
MRRRPQPALRHFNDMKTKEPDARIEPYAHPAGGWGALKYVAINLFKEKVPGGNYRALLRQNQPDGFDCPGCAWPDREHAS
TFEFCENGVKAVAAEATAKHVTPAFFAEHTVSALFDQSDYALEQHGRLTDPMVYDAATDRYVPIAWNAAFELIANHLRAL
GEPNRAAFYTSGRASNEAAFLYQLLVRYYGTNNFPDCSNMCHEATSRGLPATVGVGKGTVTLDDFEQADTLLIFGQNPAT
NHPRMMGELRACAKHGATIVSINPLKERGLERFASPQHPAEMLTMSSTPIASTFVQPRVGGDLALIKGVAKRVLELDDAA
RERGGARVLDVDFIAAHTAGFDTFAADLRAQDWAALVGESGVPREQIDALARIYVRGERVIATWGMGLTQHKHSVATVHM
LSNLMLMRGNVGRPGAGLCPVRGHSNVQGNRTVGIEEKPSDAFLERLGRVFDFAPPRGHGYDVVETIEAMLDGRIGVFIG
LGGNFAMATPDTPRTWQGLRRCGLTVHITTKLNRSHLVHGREALILPTLGRTEIDLQNGVAQGVSVEDSMCMVHASYGMN
PPASPNLLSEVAIVARLGHALFGGDKIDWLGYMNDYAKIRDAIEASIEGFDDYNARIARPGGFHLRIASREREWLTPSGR
ANFIVHALPADTPIQRARARHGKRLMTLMTTRSHDQYNTTIYALDDRYRGVFGERRVVFAHPDDLAMLGFEAGERVDLET
VWDDGIERRVAGFLLVAYDIPRGCLGAYYPETNPLVPLDSVGDVCNTPTSKSIPVLMHRSAGDAAHAA

Sequences:

>Translated_788_residues
MRRRPQPALRHFNDMKTKEPDARIEPYAHPAGGWGALKYVAINLFKEKVPGGNYRALLRQNQPDGFDCPGCAWPDREHAS
TFEFCENGVKAVAAEATAKHVTPAFFAEHTVSALFDQSDYALEQHGRLTDPMVYDAATDRYVPIAWNAAFELIANHLRAL
GEPNRAAFYTSGRASNEAAFLYQLLVRYYGTNNFPDCSNMCHEATSRGLPATVGVGKGTVTLDDFEQADTLLIFGQNPAT
NHPRMMGELRACAKHGATIVSINPLKERGLERFASPQHPAEMLTMSSTPIASTFVQPRVGGDLALIKGVAKRVLELDDAA
RERGGARVLDVDFIAAHTAGFDTFAADLRAQDWAALVGESGVPREQIDALARIYVRGERVIATWGMGLTQHKHSVATVHM
LSNLMLMRGNVGRPGAGLCPVRGHSNVQGNRTVGIEEKPSDAFLERLGRVFDFAPPRGHGYDVVETIEAMLDGRIGVFIG
LGGNFAMATPDTPRTWQGLRRCGLTVHITTKLNRSHLVHGREALILPTLGRTEIDLQNGVAQGVSVEDSMCMVHASYGMN
PPASPNLLSEVAIVARLGHALFGGDKIDWLGYMNDYAKIRDAIEASIEGFDDYNARIARPGGFHLRIASREREWLTPSGR
ANFIVHALPADTPIQRARARHGKRLMTLMTTRSHDQYNTTIYALDDRYRGVFGERRVVFAHPDDLAMLGFEAGERVDLET
VWDDGIERRVAGFLLVAYDIPRGCLGAYYPETNPLVPLDSVGDVCNTPTSKSIPVLMHRSAGDAAHAA
>Mature_788_residues
MRRRPQPALRHFNDMKTKEPDARIEPYAHPAGGWGALKYVAINLFKEKVPGGNYRALLRQNQPDGFDCPGCAWPDREHAS
TFEFCENGVKAVAAEATAKHVTPAFFAEHTVSALFDQSDYALEQHGRLTDPMVYDAATDRYVPIAWNAAFELIANHLRAL
GEPNRAAFYTSGRASNEAAFLYQLLVRYYGTNNFPDCSNMCHEATSRGLPATVGVGKGTVTLDDFEQADTLLIFGQNPAT
NHPRMMGELRACAKHGATIVSINPLKERGLERFASPQHPAEMLTMSSTPIASTFVQPRVGGDLALIKGVAKRVLELDDAA
RERGGARVLDVDFIAAHTAGFDTFAADLRAQDWAALVGESGVPREQIDALARIYVRGERVIATWGMGLTQHKHSVATVHM
LSNLMLMRGNVGRPGAGLCPVRGHSNVQGNRTVGIEEKPSDAFLERLGRVFDFAPPRGHGYDVVETIEAMLDGRIGVFIG
LGGNFAMATPDTPRTWQGLRRCGLTVHITTKLNRSHLVHGREALILPTLGRTEIDLQNGVAQGVSVEDSMCMVHASYGMN
PPASPNLLSEVAIVARLGHALFGGDKIDWLGYMNDYAKIRDAIEASIEGFDDYNARIARPGGFHLRIASREREWLTPSGR
ANFIVHALPADTPIQRARARHGKRLMTLMTTRSHDQYNTTIYALDDRYRGVFGERRVVFAHPDDLAMLGFEAGERVDLET
VWDDGIERRVAGFLLVAYDIPRGCLGAYYPETNPLVPLDSVGDVCNTPTSKSIPVLMHRSAGDAAHAA

Specific function: Probably involved in acid resistance [H]

COG id: COG0243

COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]

Homologues:

Organism=Escherichia coli, GI1787778, Length=760, Percent_Identity=49.7368421052632, Blast_Score=750, Evalue=0.0,
Organism=Escherichia coli, GI3868721, Length=313, Percent_Identity=27.4760383386581, Blast_Score=135, Evalue=1e-32,
Organism=Escherichia coli, GI1788534, Length=400, Percent_Identity=23.75, Blast_Score=96, Evalue=8e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009010
- InterPro:   IPR006657
- InterPro:   IPR006656
- InterPro:   IPR010046 [H]

Pfam domain/function: PF00384 Molybdopterin; PF01568 Molydop_binding [H]

EC number: NA

Molecular weight: Translated: 86407; Mature: 86407

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRRPQPALRHFNDMKTKEPDARIEPYAHPAGGWGALKYVAINLFKEKVPGGNYRALLRQ
CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEHEEC
NQPDGFDCPGCAWPDREHASTFEFCENGVKAVAAEATAKHVTPAFFAEHTVSALFDQSDY
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCH
ALEQHGRLTDPMVYDAATDRYVPIAWNAAFELIANHLRALGEPNRAAFYTSGRASNEAAF
HHHHCCCCCCCEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHH
LYQLLVRYYGTNNFPDCSNMCHEATSRGLPATVGVGKGTVTLDDFEQADTLLIFGQNPAT
HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEECCCCEEEECCCCCCCEEEEECCCCCC
NHPRMMGELRACAKHGATIVSINPLKERGLERFASPQHPAEMLTMSSTPIASTFVQPRVG
CCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCCHHHEEECCCCCHHHHCCCCCC
GDLALIKGVAKRVLELDDAARERGGARVLDVDFIAAHTAGFDTFAADLRAQDWAALVGES
CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEHHCCCCHHHHHHHHHHHHHHHHCCC
GVPREQIDALARIYVRGERVIATWGMGLTQHKHSVATVHMLSNLMLMRGNVGRPGAGLCP
CCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
VRGHSNVQGNRTVGIEEKPSDAFLERLGRVFDFAPPRGHGYDVVETIEAMLDGRIGVFIG
CCCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEEE
LGGNFAMATPDTPRTWQGLRRCGLTVHITTKLNRSHLVHGREALILPTLGRTEIDLQNGV
ECCCEEECCCCCCHHHHHHHHCCCEEEEEEECCCHHCCCCCCEEEEECCCCCEEEHHHCH
AQGVSVEDSMCMVHASYGMNPPASPNLLSEVAIVARLGHALFGGDKIDWLGYMNDYAKIR
HCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHH
DAIEASIEGFDDYNARIARPGGFHLRIASREREWLTPSGRANFIVHALPADTPIQRARAR
HHHHHHHCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHH
HGKRLMTLMTTRSHDQYNTTIYALDDRYRGVFGERRVVFAHPDDLAMLGFEAGERVDLET
CCCEEEEEHECCCCCCCCCEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCEEEEHH
VWDDGIERRVAGFLLVAYDIPRGCLGAYYPETNPLVPLDSVGDVCNTPTSKSIPVLMHRS
HHCCHHHHHHHHEEEEEEECCCHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCEEEECC
AGDAAHAA
CCCCCCCC
>Mature Secondary Structure
MRRRPQPALRHFNDMKTKEPDARIEPYAHPAGGWGALKYVAINLFKEKVPGGNYRALLRQ
CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEHEEC
NQPDGFDCPGCAWPDREHASTFEFCENGVKAVAAEATAKHVTPAFFAEHTVSALFDQSDY
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCH
ALEQHGRLTDPMVYDAATDRYVPIAWNAAFELIANHLRALGEPNRAAFYTSGRASNEAAF
HHHHCCCCCCCEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHH
LYQLLVRYYGTNNFPDCSNMCHEATSRGLPATVGVGKGTVTLDDFEQADTLLIFGQNPAT
HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEECCCCEEEECCCCCCCEEEEECCCCCC
NHPRMMGELRACAKHGATIVSINPLKERGLERFASPQHPAEMLTMSSTPIASTFVQPRVG
CCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCCHHHEEECCCCCHHHHCCCCCC
GDLALIKGVAKRVLELDDAARERGGARVLDVDFIAAHTAGFDTFAADLRAQDWAALVGES
CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEHHCCCCHHHHHHHHHHHHHHHHCCC
GVPREQIDALARIYVRGERVIATWGMGLTQHKHSVATVHMLSNLMLMRGNVGRPGAGLCP
CCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
VRGHSNVQGNRTVGIEEKPSDAFLERLGRVFDFAPPRGHGYDVVETIEAMLDGRIGVFIG
CCCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEEE
LGGNFAMATPDTPRTWQGLRRCGLTVHITTKLNRSHLVHGREALILPTLGRTEIDLQNGV
ECCCEEECCCCCCHHHHHHHHCCCEEEEEEECCCHHCCCCCCEEEEECCCCCEEEHHHCH
AQGVSVEDSMCMVHASYGMNPPASPNLLSEVAIVARLGHALFGGDKIDWLGYMNDYAKIR
HCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHH
DAIEASIEGFDDYNARIARPGGFHLRIASREREWLTPSGRANFIVHALPADTPIQRARAR
HHHHHHHCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHH
HGKRLMTLMTTRSHDQYNTTIYALDDRYRGVFGERRVVFAHPDDLAMLGFEAGERVDLET
CCCEEEEEHECCCCCCCCCEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCEEEEHH
VWDDGIERRVAGFLLVAYDIPRGCLGAYYPETNPLVPLDSVGDVCNTPTSKSIPVLMHRS
HHCCHHHHHHHHEEEEEEECCCHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCEEEECC
AGDAAHAA
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]