Definition | Burkholderia mallei NCTC 10247 chromosome II, complete genome. |
---|---|
Accession | NC_009079 |
Length | 2,352,693 |
Click here to switch to the map view.
The map label for this gene is yneE [C]
Identifier: 126446538
GI number: 126446538
Start: 1010359
End: 1011267
Strand: Reverse
Name: yneE [C]
Synonym: BMA10247_A1070
Alternate gene names: 126446538
Gene position: 1011267-1010359 (Counterclockwise)
Preceding gene: 126446202
Following gene: 126445727
Centisome position: 42.98
GC content: 68.98
Gene sequence:
>909_bases ATGATCGTCAGACCGCGCGAGCACGGGTTCCGGATGCTGTTCGTCTGGAACGGTTCGGTGCTCAAATCGATTCTGCCGCA GCTTGCGCTGATGAGCGCCGTGAGCATCGTCGCGCTGCTGACGAACGGCCGCATTCTCGGCGAGAAGGTGCCGCTGAACC CGACGCCGTTCACGCTCGCGGGCCTCGCGCTCGCGATCTTCGCCGCGTTTCGCAACAACGCGAGCTACGACCGCTACTGG GAGGCGCGCAAGCTCTGGGGCGGCGTGCTGAGCGCGGCGCGCGCGCTGACCTCGCAGGCGCTCGGCTACGACGCGCTCGC CGACGGCGCATCGTTCGCCCGCGCGACGGCGGGTTTCGTCTATGCGCTCAAGCACCAGTTGCGCGGCACGGACCCGACTC ACGACCTGCGCCGCCGCCTGCCCGCTGACTGGCTCGATCCGGTGCTCGCCGCGCAGTTCCGCCCGGTCGCGATCCTGCAT GCGTTGCGCGGGCGGCTGGCCGGCCGGCATCGCGACGGCGCGCTGACCGATGCGCAGCTGTGGATGCTCGACGCGCAGCT CAACGAACTCGCCGCGAAACTGGCGGGCTGCGAGCGCATCGCATCGACGCCGATCCCGTTTCCCTATCACGTGCTGCTGC ACCGGACTGTCTACGCGTATTGCGTGATGCTGCCGTTCGGGCTCGTCGACTCGATCGGCATCGCGACGCCGTTCGTATCG GTGTTCGTGTCGTACACGCTGATCGCGCTCGACGCGATCGCGGGCGAGATCGCCGAGCCGTTCGGCGACGGGCCGAACCA TCTCGCGCTCGATGCGCTGACACGGCAGATCGAGCGCTCGCTGTTCGAGCTGGCCGGCCTGCCGCTGCCGGACGAAATGC GCGCCGGCCCGAATCACCGGCTGTCGTGA
Upstream 100 bases:
>100_bases CGTGGGCGACGTCTGCAACACGCCGACGTCGAAGTCGATTCCGGTGCTGATGCACCGGTCGGCGGGCGACGCGGCGCACG CGGCATGACGCGAGGCCCGC
Downstream 100 bases:
>100_bases CGGCGGGCGGCGCGCGCCGCCACGATCGCTGTCCTTCGCGGTCCGCGGCGAGTATTTGGCGATCGAATGAACGGACCGCG CGCCACTCGCGCCGACATTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 302; Mature: 302
Protein sequence:
>302_residues MIVRPREHGFRMLFVWNGSVLKSILPQLALMSAVSIVALLTNGRILGEKVPLNPTPFTLAGLALAIFAAFRNNASYDRYW EARKLWGGVLSAARALTSQALGYDALADGASFARATAGFVYALKHQLRGTDPTHDLRRRLPADWLDPVLAAQFRPVAILH ALRGRLAGRHRDGALTDAQLWMLDAQLNELAAKLAGCERIASTPIPFPYHVLLHRTVYAYCVMLPFGLVDSIGIATPFVS VFVSYTLIALDAIAGEIAEPFGDGPNHLALDALTRQIERSLFELAGLPLPDEMRAGPNHRLS
Sequences:
>Translated_302_residues MIVRPREHGFRMLFVWNGSVLKSILPQLALMSAVSIVALLTNGRILGEKVPLNPTPFTLAGLALAIFAAFRNNASYDRYW EARKLWGGVLSAARALTSQALGYDALADGASFARATAGFVYALKHQLRGTDPTHDLRRRLPADWLDPVLAAQFRPVAILH ALRGRLAGRHRDGALTDAQLWMLDAQLNELAAKLAGCERIASTPIPFPYHVLLHRTVYAYCVMLPFGLVDSIGIATPFVS VFVSYTLIALDAIAGEIAEPFGDGPNHLALDALTRQIERSLFELAGLPLPDEMRAGPNHRLS >Mature_302_residues MIVRPREHGFRMLFVWNGSVLKSILPQLALMSAVSIVALLTNGRILGEKVPLNPTPFTLAGLALAIFAAFRNNASYDRYW EARKLWGGVLSAARALTSQALGYDALADGASFARATAGFVYALKHQLRGTDPTHDLRRRLPADWLDPVLAAQFRPVAILH ALRGRLAGRHRDGALTDAQLWMLDAQLNELAAKLAGCERIASTPIPFPYHVLLHRTVYAYCVMLPFGLVDSIGIATPFVS VFVSYTLIALDAIAGEIAEPFGDGPNHLALDALTRQIERSLFELAGLPLPDEMRAGPNHRLS
Specific function: Unknown
COG id: COG3781
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0187 family [H]
Homologues:
Organism=Escherichia coli, GI87081925, Length=302, Percent_Identity=43.7086092715232, Blast_Score=220, Evalue=1e-58,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR021134 [H]
Pfam domain/function: PF01062 Bestrophin [H]
EC number: NA
Molecular weight: Translated: 32996; Mature: 32996
Theoretical pI: Translated: 9.35; Mature: 9.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIVRPREHGFRMLFVWNGSVLKSILPQLALMSAVSIVALLTNGRILGEKVPLNPTPFTLA CCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCHHHH GLALAIFAAFRNNASYDRYWEARKLWGGVLSAARALTSQALGYDALADGASFARATAGFV HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHH YALKHQLRGTDPTHDLRRRLPADWLDPVLAAQFRPVAILHALRGRLAGRHRDGALTDAQL HHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHH WMLDAQLNELAAKLAGCERIASTPIPFPYHVLLHRTVYAYCVMLPFGLVDSIGIATPFVS HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VFVSYTLIALDAIAGEIAEPFGDGPNHLALDALTRQIERSLFELAGLPLPDEMRAGPNHR HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCC LS CC >Mature Secondary Structure MIVRPREHGFRMLFVWNGSVLKSILPQLALMSAVSIVALLTNGRILGEKVPLNPTPFTLA CCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCHHHH GLALAIFAAFRNNASYDRYWEARKLWGGVLSAARALTSQALGYDALADGASFARATAGFV HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHH YALKHQLRGTDPTHDLRRRLPADWLDPVLAAQFRPVAILHALRGRLAGRHRDGALTDAQL HHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHH WMLDAQLNELAAKLAGCERIASTPIPFPYHVLLHRTVYAYCVMLPFGLVDSIGIATPFVS HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VFVSYTLIALDAIAGEIAEPFGDGPNHLALDALTRQIERSLFELAGLPLPDEMRAGPNHR HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCC LS CC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11823852 [H]