Definition | Burkholderia mallei NCTC 10247 chromosome II, complete genome. |
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Accession | NC_009079 |
Length | 2,352,693 |
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The map label for this gene is ahpC [H]
Identifier: 126445589
GI number: 126445589
Start: 1984866
End: 1985429
Strand: Direct
Name: ahpC [H]
Synonym: BMA10247_A2046
Alternate gene names: 126445589
Gene position: 1984866-1985429 (Clockwise)
Preceding gene: 126446221
Following gene: 126447836
Centisome position: 84.37
GC content: 62.94
Gene sequence:
>564_bases ATGCCGATCATCAACAGCCCGATCAAACCGTTCAAGGCCACCGCATACCACAACGGCGACTTCGTGCAGGTGAGCGACGA GACCCTGAAGGGCAAGTGGTCCGTCGTCGTGTTCTATCCCGCCGACTTCACGTTCGTGTGCCCGACCGAGCTCGGCGATC TGGCCGAGCGCTACGCCGAATTCCAGAAGCTCGGCGTCGAAATCTACGCGGTGTCGACCGACACGCACTTCACGCACAAG GCATGGCACGATACGTCGGACACGATCGCGAAGATCAAGTATCCGATGATCGGCGATCCGACGCTCGCGATCTCGCGCAA CTTCGACGTGCTGATCGAAGAGGAAGGCCTCGCGCTGCGCGGCACGTTCGTGATCAATCCGCAGGGCGAGATCAAGCTGT GCGAGATCCACGACAACGGCATCGGCCGCGACGCGGGCGAGTTGCTGCGCAAGGTCCAGGCCGCGCAATACGCCGCCGCA CATCCGGGCGAAGTCTGCCCCGCCAAATGGACGCCGGGCGCCGACACGCTCACGCCGTCTCTCGACCTGATCGGCAAGAT CTGA
Upstream 100 bases:
>100_bases AATACCGATTCCGATCATTGAAACATGCAATTTCACAGAATCGGGCGCCATCGCCATACTGGCGCTTCCTGATCCAACAA CGATTCAAGAGGAAGCGCAA
Downstream 100 bases:
>100_bases AGCCACGCGGCGGGGCCGCCGCCGTTCGCGCCATGCGGGCCGAGGGTGCCGTGCGTTTCGTGGCCCGTTTGCGGCCCCCT TGCGGCCCGTTTTCAGCCGT
Product: alkyl hydroperoxide reductase, subunit C
Products: NA
Alternate protein names: Alkyl hydroperoxide reductase protein C22; Peroxiredoxin; SCRP-23; Sulfate starvation-induced protein 8; SSI8; Thioredoxin peroxidase [H]
Number of amino acids: Translated: 187; Mature: 186
Protein sequence:
>187_residues MPIINSPIKPFKATAYHNGDFVQVSDETLKGKWSVVVFYPADFTFVCPTELGDLAERYAEFQKLGVEIYAVSTDTHFTHK AWHDTSDTIAKIKYPMIGDPTLAISRNFDVLIEEEGLALRGTFVINPQGEIKLCEIHDNGIGRDAGELLRKVQAAQYAAA HPGEVCPAKWTPGADTLTPSLDLIGKI
Sequences:
>Translated_187_residues MPIINSPIKPFKATAYHNGDFVQVSDETLKGKWSVVVFYPADFTFVCPTELGDLAERYAEFQKLGVEIYAVSTDTHFTHK AWHDTSDTIAKIKYPMIGDPTLAISRNFDVLIEEEGLALRGTFVINPQGEIKLCEIHDNGIGRDAGELLRKVQAAQYAAA HPGEVCPAKWTPGADTLTPSLDLIGKI >Mature_186_residues PIINSPIKPFKATAYHNGDFVQVSDETLKGKWSVVVFYPADFTFVCPTELGDLAERYAEFQKLGVEIYAVSTDTHFTHKA WHDTSDTIAKIKYPMIGDPTLAISRNFDVLIEEEGLALRGTFVINPQGEIKLCEIHDNGIGRDAGELLRKVQAAQYAAAH PGEVCPAKWTPGADTLTPSLDLIGKI
Specific function: Directly reduces organic hydroperoxides in its reduced dithiol form [H]
COG id: COG0450
COG function: function code O; Peroxiredoxin
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
Organism=Homo sapiens, GI5802974, Length=173, Percent_Identity=46.242774566474, Blast_Score=159, Evalue=1e-39, Organism=Homo sapiens, GI32483377, Length=173, Percent_Identity=46.242774566474, Blast_Score=159, Evalue=1e-39, Organism=Homo sapiens, GI32189392, Length=182, Percent_Identity=43.956043956044, Blast_Score=158, Evalue=3e-39, Organism=Homo sapiens, GI4505591, Length=182, Percent_Identity=41.2087912087912, Blast_Score=149, Evalue=1e-36, Organism=Homo sapiens, GI32455266, Length=182, Percent_Identity=41.2087912087912, Blast_Score=149, Evalue=1e-36, Organism=Homo sapiens, GI32455264, Length=182, Percent_Identity=41.2087912087912, Blast_Score=149, Evalue=1e-36, Organism=Homo sapiens, GI5453549, Length=187, Percent_Identity=40.1069518716578, Blast_Score=144, Evalue=6e-35, Organism=Homo sapiens, GI33188454, Length=81, Percent_Identity=49.3827160493827, Blast_Score=86, Evalue=2e-17, Organism=Homo sapiens, GI4758638, Length=157, Percent_Identity=29.9363057324841, Blast_Score=67, Evalue=7e-12, Organism=Escherichia coli, GI1786822, Length=187, Percent_Identity=66.3101604278075, Blast_Score=276, Evalue=7e-76, Organism=Caenorhabditis elegans, GI193204376, Length=182, Percent_Identity=42.8571428571429, Blast_Score=155, Evalue=1e-38, Organism=Caenorhabditis elegans, GI32565831, Length=182, Percent_Identity=42.8571428571429, Blast_Score=155, Evalue=1e-38, Organism=Caenorhabditis elegans, GI17554494, Length=177, Percent_Identity=41.8079096045198, Blast_Score=148, Evalue=2e-36, Organism=Caenorhabditis elegans, GI25153706, Length=164, Percent_Identity=29.2682926829268, Blast_Score=74, Evalue=6e-14, Organism=Saccharomyces cerevisiae, GI6323613, Length=175, Percent_Identity=40.5714285714286, Blast_Score=136, Evalue=2e-33, Organism=Saccharomyces cerevisiae, GI6320661, Length=175, Percent_Identity=38.8571428571429, Blast_Score=136, Evalue=2e-33, Organism=Saccharomyces cerevisiae, GI6319407, Length=163, Percent_Identity=31.9018404907975, Blast_Score=88, Evalue=1e-18, Organism=Drosophila melanogaster, GI24656348, Length=181, Percent_Identity=43.646408839779, Blast_Score=159, Evalue=1e-39, Organism=Drosophila melanogaster, GI17864676, Length=181, Percent_Identity=43.646408839779, Blast_Score=159, Evalue=1e-39, Organism=Drosophila melanogaster, GI17738015, Length=184, Percent_Identity=40.2173913043478, Blast_Score=158, Evalue=2e-39, Organism=Drosophila melanogaster, GI21357347, Length=180, Percent_Identity=40.5555555555556, Blast_Score=152, Evalue=1e-37, Organism=Drosophila melanogaster, GI17157991, Length=180, Percent_Identity=40.5555555555556, Blast_Score=148, Evalue=2e-36, Organism=Drosophila melanogaster, GI24641739, Length=180, Percent_Identity=40.5555555555556, Blast_Score=148, Evalue=2e-36, Organism=Drosophila melanogaster, GI17975518, Length=158, Percent_Identity=31.6455696202532, Blast_Score=86, Evalue=1e-17, Organism=Drosophila melanogaster, GI24652434, Length=158, Percent_Identity=31.6455696202532, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI24652436, Length=158, Percent_Identity=31.6455696202532, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI24581278, Length=158, Percent_Identity=31.6455696202532, Blast_Score=84, Evalue=4e-17,
Paralogues:
None
Copy number: 300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2250 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 6040 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1580 Molecules/Cell In: Stationary-Phase
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000866 - InterPro: IPR017559 - InterPro: IPR019479 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF10417 1-cysPrx_C; PF00578 AhpC-TSA [H]
EC number: =1.11.1.15 [H]
Molecular weight: Translated: 20591; Mature: 20459
Theoretical pI: Translated: 5.03; Mature: 5.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPIINSPIKPFKATAYHNGDFVQVSDETLKGKWSVVVFYPADFTFVCPTELGDLAERYAE CCCCCCCCCCCEEEEEECCCEEEECCCCCCCEEEEEEEECCCEEEECCCHHHHHHHHHHH FQKLGVEIYAVSTDTHFTHKAWHDTSDTIAKIKYPMIGDPTLAISRNFDVLIEEEGLALR HHHCCEEEEEEECCCCEEECCCCCCCCCEEEEECCCCCCCEEEEECCCEEEEECCCEEEE GTFVINPQGEIKLCEIHDNGIGRDAGELLRKVQAAQYAAAHPGEVCPAKWTPGADTLTPS EEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC LDLIGKI HHHEECC >Mature Secondary Structure PIINSPIKPFKATAYHNGDFVQVSDETLKGKWSVVVFYPADFTFVCPTELGDLAERYAE CCCCCCCCCCEEEEEECCCEEEECCCCCCCEEEEEEEECCCEEEECCCHHHHHHHHHHH FQKLGVEIYAVSTDTHFTHKAWHDTSDTIAKIKYPMIGDPTLAISRNFDVLIEEEGLALR HHHCCEEEEEEECCCCEEECCCCCCCCCEEEEECCCCCCCEEEEECCCEEEEECCCEEEE GTFVINPQGEIKLCEIHDNGIGRDAGELLRKVQAAQYAAAHPGEVCPAKWTPGADTLTPS EEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC LDLIGKI HHHEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]