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The map label for this gene is ybgC [C]

Identifier: 126207783

GI number: 126207783

Start: 332646

End: 333035

Strand: Direct

Name: ybgC [C]

Synonym: APL_0299

Alternate gene names: 126207783

Gene position: 332646-333035 (Clockwise)

Preceding gene: 126207782

Following gene: 126207784

Centisome position: 14.63

GC content: 38.97

Gene sequence:

>390_bases
ATGAATTTCCCAATTAGAGTGTATTACGAAGATACGGATGCAGGTGGTGTTGTTTACCATGCAAATTACGTTTGTTTCTT
CGAACGCGCACGTACCGAATTTTTACGTCAAGCCGGTTTTTCTCAACAAGAATTATTAAGTAAGTCATTTGCCTTTGTGG
TTAAAAAGTTAGAAGTCGATTATAAAGTGCCGGCTCGACTTGATGATTTACTGAATGTTGAAACGACTGTGCTTGAGTTA
AAAAAAGCAACAATTGTTTTTCGGCAACAATTATGGAAAGGCGATATTTGTTTAAGCTCGGCTATCGTTACTGTTGCCAG
TGTTGATTTAACCAAAATGAAGCCTGTAGCCATTCCTGCCGAGATCAGGCAAGTTCTACAAGCGGTCTAA

Upstream 100 bases:

>100_bases
TTTTCCTATTGCACAACGATTTTTCTCTCTCTAAAATAGTCTGCAATTTACGCCTAATTTTTGGGCGTTTTTCATTTTGG
CGAATTTTTTTGGAAGCATC

Downstream 100 bases:

>100_bases
TTTTTAGCAAATTATTTACTTGGAGTTTTACTAAATGGAAACTGAATTTAATCTTGTCTCGTTATTTATGCAGGCAAGTA
TCGTGGTTAAAATTGTTATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
MNFPIRVYYEDTDAGGVVYHANYVCFFERARTEFLRQAGFSQQELLSKSFAFVVKKLEVDYKVPARLDDLLNVETTVLEL
KKATIVFRQQLWKGDICLSSAIVTVASVDLTKMKPVAIPAEIRQVLQAV

Sequences:

>Translated_129_residues
MNFPIRVYYEDTDAGGVVYHANYVCFFERARTEFLRQAGFSQQELLSKSFAFVVKKLEVDYKVPARLDDLLNVETTVLEL
KKATIVFRQQLWKGDICLSSAIVTVASVDLTKMKPVAIPAEIRQVLQAV
>Mature_129_residues
MNFPIRVYYEDTDAGGVVYHANYVCFFERARTEFLRQAGFSQQELLSKSFAFVVKKLEVDYKVPARLDDLLNVETTVLEL
KKATIVFRQQLWKGDICLSSAIVTVASVDLTKMKPVAIPAEIRQVLQAV

Specific function: Unknown

COG id: COG0824

COG function: function code R; Predicted thioesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 4-hydroxybenzoyl-CoA thioesterase family [H]

Homologues:

Organism=Escherichia coli, GI1786957, Length=121, Percent_Identity=52.8925619834711, Blast_Score=136, Evalue=5e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006684
- InterPro:   IPR008272
- InterPro:   IPR006683
- InterPro:   IPR014166 [H]

Pfam domain/function: PF03061 4HBT [H]

EC number: NA

Molecular weight: Translated: 14663; Mature: 14663

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: PS01328 4HBCOA_THIOESTERASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFPIRVYYEDTDAGGVVYHANYVCFFERARTEFLRQAGFSQQELLSKSFAFVVKKLEVD
CCCCEEEEEECCCCCCEEEECCEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
YKVPARLDDLLNVETTVLELKKATIVFRQQLWKGDICLSSAIVTVASVDLTKMKPVAIPA
CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHCCCCEECCH
EIRQVLQAV
HHHHHHHCC
>Mature Secondary Structure
MNFPIRVYYEDTDAGGVVYHANYVCFFERARTEFLRQAGFSQQELLSKSFAFVVKKLEVD
CCCCEEEEEECCCCCCEEEECCEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
YKVPARLDDLLNVETTVLELKKATIVFRQQLWKGDICLSSAIVTVASVDLTKMKPVAIPA
CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHCCCCEECCH
EIRQVLQAV
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]