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The map label for this gene is cydB [C]

Identifier: 126207782

GI number: 126207782

Start: 330942

End: 332078

Strand: Direct

Name: cydB [C]

Synonym: APL_0298

Alternate gene names: 126207782

Gene position: 330942-332078 (Clockwise)

Preceding gene: 126207781

Following gene: 126207783

Centisome position: 14.55

GC content: 40.99

Gene sequence:

>1137_bases
ATGATCGATTATGAAATTCTCCGCTTTATTTGGTGGATTCTTATTGTCGTACTACTAATCGGTTTTGCGGTTACCGACGG
CTTCGATATGGGCGTATTAACGTTATTGCCGGTAATCGGTAAAAGTAATGTTGAACGTCGAGTAATGATCAATACCATTG
CGCCTCACTGGGACGGTAACCAAGTATGGTTATTAACTGCCGGCGGTGCAATCTTTGCCGCATGGCCGACGGTTTATGCA
ACATCGTTTTCCGGTTTCTTCTTAGCAATGATTTTAGTACTTGCCGCACTTTTCTTCCGTCCGGTAGGTTTTGAGTATCG
TGCTAAAATTGATAGCCCGAAATGGCGTAATGCTTGGGACTGGGGATTATTTATCGGTGGTTTTGTTCCGTCGTTAATTT
TCGGTGTAGCATTCGGTAATCTATTACAAGGCGTACCGTTCGAATTTAATAACATTAACCAAGTGGTATATACCGGCTCG
TTCTTCGGTTTATTAAATCCGTTCGCATTATTATGCGGTGTAGTAAGTTTAATGATGCTGACTACACAAGGTGCGACATG
GTTACAAATGAAAACTACAGGTGATCTTCGTAATCGTGCGAGAGCAACGGCACAATTAACGGCAGCGATTGTATTAGTGG
CATTCGTATTAGCCGGTGTTTGGCTATCATTTAAAGACGGTTTTGTGATTACAAGCGATTTAGATCACAATGCACAATCT
TTCCTAACCAATAAAACGGTAGCGGTTGAAAGTGCGGCATGGTTTAGAAACTTTGCTGAAATGCCGGTATTATGGGTAGT
TCCTGCATTAGCGGTAGTAGGTGCATTACTAACGATCGTTGCTTCTAAAGCGAATCGTTCCGGTTTTGCATTCTTCTCTT
CATCAATTATGCTTGTTGGTGTAATCACGACTGCGGCAGTATCAATGTTCCCATTCATTATGCCGTCAATTTCTCATCCG
GAAATGAGTTTAACGGTTTGGGATTCAACAGCTAGTCAATATACATTAATGGCAATGTTAGTTGTTGCGTGTATTTTTGT
GCCTTTAGTATTAGCTTATACTACGTGGTCATATTTCAAAATGTATGGTCGCTTAGATGCTAAATACTTAGAAGATAACA
AAGCAAGCGCATACTAA

Upstream 100 bases:

>100_bases
GAAATGTACTTAATGTTCAAATACGGCAGACTTGGTCCAAGCGCACTAAAAACAGGTCGTTACCATTTTGAACAATCTGC
GAAATAATAAGGAGTGAACA

Downstream 100 bases:

>100_bases
GGAGATAAACAGATGTTTTATGTAACTTGGGTATTAGGCGTTTTACTTGCGATTCTTTTTGCCACGGTAATTACTGTTAG
CATTGAGAAAACAGGCAAAT

Product: cytochrome oxidase subunit 2

Products: NA

Alternate protein names: Cytochrome oxidase subunit II [H]

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MIDYEILRFIWWILIVVLLIGFAVTDGFDMGVLTLLPVIGKSNVERRVMINTIAPHWDGNQVWLLTAGGAIFAAWPTVYA
TSFSGFFLAMILVLAALFFRPVGFEYRAKIDSPKWRNAWDWGLFIGGFVPSLIFGVAFGNLLQGVPFEFNNINQVVYTGS
FFGLLNPFALLCGVVSLMMLTTQGATWLQMKTTGDLRNRARATAQLTAAIVLVAFVLAGVWLSFKDGFVITSDLDHNAQS
FLTNKTVAVESAAWFRNFAEMPVLWVVPALAVVGALLTIVASKANRSGFAFFSSSIMLVGVITTAAVSMFPFIMPSISHP
EMSLTVWDSTASQYTLMAMLVVACIFVPLVLAYTTWSYFKMYGRLDAKYLEDNKASAY

Sequences:

>Translated_378_residues
MIDYEILRFIWWILIVVLLIGFAVTDGFDMGVLTLLPVIGKSNVERRVMINTIAPHWDGNQVWLLTAGGAIFAAWPTVYA
TSFSGFFLAMILVLAALFFRPVGFEYRAKIDSPKWRNAWDWGLFIGGFVPSLIFGVAFGNLLQGVPFEFNNINQVVYTGS
FFGLLNPFALLCGVVSLMMLTTQGATWLQMKTTGDLRNRARATAQLTAAIVLVAFVLAGVWLSFKDGFVITSDLDHNAQS
FLTNKTVAVESAAWFRNFAEMPVLWVVPALAVVGALLTIVASKANRSGFAFFSSSIMLVGVITTAAVSMFPFIMPSISHP
EMSLTVWDSTASQYTLMAMLVVACIFVPLVLAYTTWSYFKMYGRLDAKYLEDNKASAY
>Mature_378_residues
MIDYEILRFIWWILIVVLLIGFAVTDGFDMGVLTLLPVIGKSNVERRVMINTIAPHWDGNQVWLLTAGGAIFAAWPTVYA
TSFSGFFLAMILVLAALFFRPVGFEYRAKIDSPKWRNAWDWGLFIGGFVPSLIFGVAFGNLLQGVPFEFNNINQVVYTGS
FFGLLNPFALLCGVVSLMMLTTQGATWLQMKTTGDLRNRARATAQLTAAIVLVAFVLAGVWLSFKDGFVITSDLDHNAQS
FLTNKTVAVESAAWFRNFAEMPVLWVVPALAVVGALLTIVASKANRSGFAFFSSSIMLVGVITTAAVSMFPFIMPSISHP
EMSLTVWDSTASQYTLMAMLVVACIFVPLVLAYTTWSYFKMYGRLDAKYLEDNKASAY

Specific function: Probable cytochrome oxidase subunit [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB and CydB. Probable ortholog of the ancestor of AppB/CydB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=379, Percent_Identity=59.3667546174143, Blast_Score=467, Evalue=1e-133,
Organism=Escherichia coli, GI1787213, Length=379, Percent_Identity=52.5065963060686, Blast_Score=401, Evalue=1e-113,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 41755; Mature: 41755

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDYEILRFIWWILIVVLLIGFAVTDGFDMGVLTLLPVIGKSNVERRVMINTIAPHWDGN
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCC
QVWLLTAGGAIFAAWPTVYATSFSGFFLAMILVLAALFFRPVGFEYRAKIDSPKWRNAWD
EEEEEEECCEEEEHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCH
WGLFIGGFVPSLIFGVAFGNLLQGVPFEFNNINQVVYTGSFFGLLNPFALLCGVVSLMML
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHH
TTQGATWLQMKTTGDLRNRARATAQLTAAIVLVAFVLAGVWLSFKDGFVITSDLDHNAQS
HCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHH
FLTNKTVAVESAAWFRNFAEMPVLWVVPALAVVGALLTIVASKANRSGFAFFSSSIMLVG
HHHCCHHEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHH
VITTAAVSMFPFIMPSISHPEMSLTVWDSTASQYTLMAMLVVACIFVPLVLAYTTWSYFK
HHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MYGRLDAKYLEDNKASAY
HHHCCCHHHHCCCCCCCC
>Mature Secondary Structure
MIDYEILRFIWWILIVVLLIGFAVTDGFDMGVLTLLPVIGKSNVERRVMINTIAPHWDGN
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCC
QVWLLTAGGAIFAAWPTVYATSFSGFFLAMILVLAALFFRPVGFEYRAKIDSPKWRNAWD
EEEEEEECCEEEEHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCH
WGLFIGGFVPSLIFGVAFGNLLQGVPFEFNNINQVVYTGSFFGLLNPFALLCGVVSLMML
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHH
TTQGATWLQMKTTGDLRNRARATAQLTAAIVLVAFVLAGVWLSFKDGFVITSDLDHNAQS
HCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHH
FLTNKTVAVESAAWFRNFAEMPVLWVVPALAVVGALLTIVASKANRSGFAFFSSSIMLVG
HHHCCHHEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHH
VITTAAVSMFPFIMPSISHPEMSLTVWDSTASQYTLMAMLVVACIFVPLVLAYTTWSYFK
HHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MYGRLDAKYLEDNKASAY
HHHCCCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]