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The map label for this gene is cydA [C]

Identifier: 126207781

GI number: 126207781

Start: 329378

End: 330928

Strand: Direct

Name: cydA [C]

Synonym: APL_0297

Alternate gene names: 126207781

Gene position: 329378-330928 (Clockwise)

Preceding gene: 126207779

Following gene: 126207782

Centisome position: 14.48

GC content: 41.91

Gene sequence:

>1551_bases
ATGTTAGACGTTGTTGAACTCTCTCGCTTGCAGTTTGCTTTAACTGCTCTCTATCACTTCTTATTCGTGCCGTTAACATT
AGGTCTCTCTTTTGTTCTTGTAGTAATGGAAACTCTTTATGTAACGACAGGAAAAGAAGTTTATAAAGATATGACTAAAT
TCTGGGGTAAGTTATTCGGTATTAACTTTGCCTTAGGGGTAACGACTGGTATTACGATGGAATTCCAGTTTGGTATGAAC
TGGTCATATTATTCTCACTATGTAGGTGACATCTTTGGTGCTCCGTTAGCAATCGAAGGCTTAATGGCGTTCTTCTTAGA
ATCAACCTTCATCGGTTTATTCTTCTTCGGTTGGGATCGTTTATCTAAAGGTAAACACTTATTAGCGACTTATGCGGTGG
CATTCGGTTCTAACTTATCCGCTTTATGGATCCTTGTGGCAAACGGTTGGATGCAAAATCCGGTCGGTTCAGAGTTTAAC
TTCGAAACAATGCGAATGGAGCTTGTGAGCTTCTCCGAGCTTGTATTAAATCCGGTAACGCAATCTAAATTCTTACATAC
GGTAACGGCAGGTTATACTTGCGGTGCGGTATTCGTGTTAGGTATTAGCGCTTACTATATTTTAAAAGGTCAAGATCTCG
GTTTCGCAAAACGATCATTCTCTGTCGGTGCAAGTTTCGGTTTAGTCGCTATTATTGCCGTAGCTATTATGGGTGACGAA
TCCGGTTATGAAATCGGTAAAGCGCAACCGACTAAGTTAGCTGCAATGGAAGGTGAGTTTGAAACTCAACCGGCTCCGGC
TGCATGGAACGTAGTTGTACTTCCGAATACGGCGGAAATGAAAAACGAGTTCTCAATCCATATTCCGTATATGGCGGGTA
TTATTGCAACACGTTCTTTTGATACCGAAATTAAAGGTTTAAATGACATTCGTGCAATCAACGAACAACGTGTTCGTACC
GGTATCCAAGCCTATGCATTACTCGAAAAATTACGTACGGGTAATTATACGGCAGAAGATAAAGCGGCATTCCAAGCGGG
TCAAAAAGATCTAGGTTTTGGGTTATTGCTTAAACAATATACGCCGAATGTGGGTGATGCGACCGAAGAACAAATTCAAA
AAGCGGCGGCAAGTACGATTCCTAACGTAGGTCCTACGTTCTGGGCATTCCGTATTATGATGGCGTCAGGCGGATTAATG
CTTCTCTTAATCGGTTTCGCATTCTTCCAAAATATGCGCGGTACGGTTGGTAAAAGCCGTTTATTCCTAAAAGCAATGTT
GTGGGGTATTCCGCTTCCGTGGATTGCGATTGAATCCGGTTGGTTCTTAGCCGAATACGGTCGTCAGCCGTGGGCAATTT
ATGAAATGTTACCGACAGGCGTATCTAATTCTGCATTAACTACAACGGATCTTTGGATCGCTATCGGCTTGTTATGCGGT
TTATATACACTATTCCTTGTAGTTGAAATGTACTTAATGTTCAAATACGGCAGACTTGGTCCAAGCGCACTAAAAACAGG
TCGTTACCATTTTGAACAATCTGCGAAATAA

Upstream 100 bases:

>100_bases
GGTATTAGGTATTTGTTTTAGGTCAAAATTCTGTTGGGTGATTATTTGTTGTTCTAAATAATCAATAATAATAAATATTG
TACTTTATAAGAGGTCTGAG

Downstream 100 bases:

>100_bases
TAAGGAGTGAACAATGATCGATTATGAAATTCTCCGCTTTATTTGGTGGATTCTTATTGTCGTACTACTAATCGGTTTTG
CGGTTACCGACGGCTTCGAT

Product: cytochrome oxidase subunit 1

Products: NA

Alternate protein names: Cytochrome oxidase subunit I [H]

Number of amino acids: Translated: 516; Mature: 516

Protein sequence:

>516_residues
MLDVVELSRLQFALTALYHFLFVPLTLGLSFVLVVMETLYVTTGKEVYKDMTKFWGKLFGINFALGVTTGITMEFQFGMN
WSYYSHYVGDIFGAPLAIEGLMAFFLESTFIGLFFFGWDRLSKGKHLLATYAVAFGSNLSALWILVANGWMQNPVGSEFN
FETMRMELVSFSELVLNPVTQSKFLHTVTAGYTCGAVFVLGISAYYILKGQDLGFAKRSFSVGASFGLVAIIAVAIMGDE
SGYEIGKAQPTKLAAMEGEFETQPAPAAWNVVVLPNTAEMKNEFSIHIPYMAGIIATRSFDTEIKGLNDIRAINEQRVRT
GIQAYALLEKLRTGNYTAEDKAAFQAGQKDLGFGLLLKQYTPNVGDATEEQIQKAAASTIPNVGPTFWAFRIMMASGGLM
LLLIGFAFFQNMRGTVGKSRLFLKAMLWGIPLPWIAIESGWFLAEYGRQPWAIYEMLPTGVSNSALTTTDLWIAIGLLCG
LYTLFLVVEMYLMFKYGRLGPSALKTGRYHFEQSAK

Sequences:

>Translated_516_residues
MLDVVELSRLQFALTALYHFLFVPLTLGLSFVLVVMETLYVTTGKEVYKDMTKFWGKLFGINFALGVTTGITMEFQFGMN
WSYYSHYVGDIFGAPLAIEGLMAFFLESTFIGLFFFGWDRLSKGKHLLATYAVAFGSNLSALWILVANGWMQNPVGSEFN
FETMRMELVSFSELVLNPVTQSKFLHTVTAGYTCGAVFVLGISAYYILKGQDLGFAKRSFSVGASFGLVAIIAVAIMGDE
SGYEIGKAQPTKLAAMEGEFETQPAPAAWNVVVLPNTAEMKNEFSIHIPYMAGIIATRSFDTEIKGLNDIRAINEQRVRT
GIQAYALLEKLRTGNYTAEDKAAFQAGQKDLGFGLLLKQYTPNVGDATEEQIQKAAASTIPNVGPTFWAFRIMMASGGLM
LLLIGFAFFQNMRGTVGKSRLFLKAMLWGIPLPWIAIESGWFLAEYGRQPWAIYEMLPTGVSNSALTTTDLWIAIGLLCG
LYTLFLVVEMYLMFKYGRLGPSALKTGRYHFEQSAK
>Mature_516_residues
MLDVVELSRLQFALTALYHFLFVPLTLGLSFVLVVMETLYVTTGKEVYKDMTKFWGKLFGINFALGVTTGITMEFQFGMN
WSYYSHYVGDIFGAPLAIEGLMAFFLESTFIGLFFFGWDRLSKGKHLLATYAVAFGSNLSALWILVANGWMQNPVGSEFN
FETMRMELVSFSELVLNPVTQSKFLHTVTAGYTCGAVFVLGISAYYILKGQDLGFAKRSFSVGASFGLVAIIAVAIMGDE
SGYEIGKAQPTKLAAMEGEFETQPAPAAWNVVVLPNTAEMKNEFSIHIPYMAGIIATRSFDTEIKGLNDIRAINEQRVRT
GIQAYALLEKLRTGNYTAEDKAAFQAGQKDLGFGLLLKQYTPNVGDATEEQIQKAAASTIPNVGPTFWAFRIMMASGGLM
LLLIGFAFFQNMRGTVGKSRLFLKAMLWGIPLPWIAIESGWFLAEYGRQPWAIYEMLPTGVSNSALTTTDLWIAIGLLCG
LYTLFLVVEMYLMFKYGRLGPSALKTGRYHFEQSAK

Specific function: Probable cytochrome oxidase subunit [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=515, Percent_Identity=66.9902912621359, Blast_Score=747, Evalue=0.0,
Organism=Escherichia coli, GI1787212, Length=506, Percent_Identity=57.7075098814229, Blast_Score=612, Evalue=1e-176,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 57173; Mature: 57173

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDVVELSRLQFALTALYHFLFVPLTLGLSFVLVVMETLYVTTGKEVYKDMTKFWGKLFG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
INFALGVTTGITMEFQFGMNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFIGLFFFGWDR
CEEEEEECCCEEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LSKGKHLLATYAVAFGSNLSALWILVANGWMQNPVGSEFNFETMRMELVSFSELVLNPVT
HCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCH
QSKFLHTVTAGYTCGAVFVLGISAYYILKGQDLGFAKRSFSVGASFGLVAIIAVAIMGDE
HHHHHHHHHCCCHHHHHHHHHHHEEEEEECCCCCCHHHHHCCCCHHHHHHHHHHHHCCCC
SGYEIGKAQPTKLAAMEGEFETQPAPAAWNVVVLPNTAEMKNEFSIHIPYMAGIIATRSF
CCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCHHHCCCEEEEECHHHHHHHHCCC
DTEIKGLNDIRAINEQRVRTGIQAYALLEKLRTGNYTAEDKAAFQAGQKDLGFGLLLKQY
CCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHH
TPNVGDATEEQIQKAAASTIPNVGPTFWAFRIMMASGGLMLLLIGFAFFQNMRGTVGKSR
CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHH
LFLKAMLWGIPLPWIAIESGWFLAEYGRQPWAIYEMLPTGVSNSALTTTDLWIAIGLLCG
HHHHHHHHCCCCCCEEEECCEEEHHHCCCCEEEHHHHCCCCCCCCEEHHHHHHHHHHHHH
LYTLFLVVEMYLMFKYGRLGPSALKTGRYHFEQSAK
HHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHCCCCC
>Mature Secondary Structure
MLDVVELSRLQFALTALYHFLFVPLTLGLSFVLVVMETLYVTTGKEVYKDMTKFWGKLFG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
INFALGVTTGITMEFQFGMNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFIGLFFFGWDR
CEEEEEECCCEEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LSKGKHLLATYAVAFGSNLSALWILVANGWMQNPVGSEFNFETMRMELVSFSELVLNPVT
HCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCH
QSKFLHTVTAGYTCGAVFVLGISAYYILKGQDLGFAKRSFSVGASFGLVAIIAVAIMGDE
HHHHHHHHHCCCHHHHHHHHHHHEEEEEECCCCCCHHHHHCCCCHHHHHHHHHHHHCCCC
SGYEIGKAQPTKLAAMEGEFETQPAPAAWNVVVLPNTAEMKNEFSIHIPYMAGIIATRSF
CCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCHHHCCCEEEEECHHHHHHHHCCC
DTEIKGLNDIRAINEQRVRTGIQAYALLEKLRTGNYTAEDKAAFQAGQKDLGFGLLLKQY
CCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHH
TPNVGDATEEQIQKAAASTIPNVGPTFWAFRIMMASGGLMLLLIGFAFFQNMRGTVGKSR
CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHH
LFLKAMLWGIPLPWIAIESGWFLAEYGRQPWAIYEMLPTGVSNSALTTTDLWIAIGLLCG
HHHHHHHHCCCCCCEEEECCEEEHHHCCCCEEEHHHHCCCCCCCCEEHHHHHHHHHHHHH
LYTLFLVVEMYLMFKYGRLGPSALKTGRYHFEQSAK
HHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]