Click here to switch to the map view.

The map label for this gene is yccA [H]

Identifier: 126207762

GI number: 126207762

Start: 301375

End: 302040

Strand: Reverse

Name: yccA [H]

Synonym: APL_0274

Alternate gene names: 126207762

Gene position: 302040-301375 (Counterclockwise)

Preceding gene: 126207767

Following gene: 126207761

Centisome position: 13.28

GC content: 42.04

Gene sequence:

>666_bases
ATGGAAAATCGTGTAATTAGCGGTGCGGCGGGTAACGAATCGTTACTTAGTACCCACAAAGTATTACGTAATACTTATTT
ATTACTTTCAATGACATTGGCTTTCTCGGCCGTTATTGCTTTTGCGGCAATGTCAATGAACGCACCTGCGTTACCGTGGT
GGGGATTATTAATCGGTTTCTACGGTTTATTATTTCTTACTAATGCTACTGCAAACAGCAGTGCGGGTATCTTAAGCGTA
TTTGCTTTAACCGGCTTTTTAGGCTACACCTTAGGCCCAATTTTGAACCGCTATATCGGTGCGGGTTTAGGCGATGTCGT
CGCTCTTGCATTGGGTTCAACCGCATTAGTATTCTTTGCTTGTTCAGCTTACGTGCTGACGACCAAAAAAGATATGTCAT
TCTTATCCGGTATGATGATGGCATTATTTGTGGTGTTACTCGTTGGGATTATTGCTAACATTTTCTTAGCGATTCCGGCA
TTAAGCCTTGCGATGAGCGCACTATTCGTCGTGTTCTCAAGCGGTGCGATTTTACTGGGTACCAGCAATATTATTCACGG
CGGTGAAACCAATTATATCCGTGCGACAGTGGATTTATACGTATCTATTTACAACTTGTTCTTAAGCCTATTACAAATCT
TCGGCGTATTAGGTAGTGACGATTAA

Upstream 100 bases:

>100_bases
AGTCAATTGACTTTGGCTAAATTTGTCGCTAATTTACACTTGATTTATGGAAGTCTGTCCATATATAAATAAAAGTTTTG
TTCAACTTAAAGGAAACAAT

Downstream 100 bases:

>100_bases
TCTAAAACGAATTTAAGAGAGTAAGTGCCACACCCGTGGCACTTTTTATTTTATGTATTACATTGAATTAAACGAAAAAA
AATACCCGACCGACGCTTCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MENRVISGAAGNESLLSTHKVLRNTYLLLSMTLAFSAVIAFAAMSMNAPALPWWGLLIGFYGLLFLTNATANSSAGILSV
FALTGFLGYTLGPILNRYIGAGLGDVVALALGSTALVFFACSAYVLTTKKDMSFLSGMMMALFVVLLVGIIANIFLAIPA
LSLAMSALFVVFSSGAILLGTSNIIHGGETNYIRATVDLYVSIYNLFLSLLQIFGVLGSDD

Sequences:

>Translated_221_residues
MENRVISGAAGNESLLSTHKVLRNTYLLLSMTLAFSAVIAFAAMSMNAPALPWWGLLIGFYGLLFLTNATANSSAGILSV
FALTGFLGYTLGPILNRYIGAGLGDVVALALGSTALVFFACSAYVLTTKKDMSFLSGMMMALFVVLLVGIIANIFLAIPA
LSLAMSALFVVFSSGAILLGTSNIIHGGETNYIRATVDLYVSIYNLFLSLLQIFGVLGSDD
>Mature_221_residues
MENRVISGAAGNESLLSTHKVLRNTYLLLSMTLAFSAVIAFAAMSMNAPALPWWGLLIGFYGLLFLTNATANSSAGILSV
FALTGFLGYTLGPILNRYIGAGLGDVVALALGSTALVFFACSAYVLTTKKDMSFLSGMMMALFVVLLVGIIANIFLAIPA
LSLAMSALFVVFSSGAILLGTSNIIHGGETNYIRATVDLYVSIYNLFLSLLQIFGVLGSDD

Specific function: Unknown

COG id: COG0670

COG function: function code R; Integral membrane protein, interacts with FtsH

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BI1 family [H]

Homologues:

Organism=Escherichia coli, GI1787205, Length=218, Percent_Identity=65.1376146788991, Blast_Score=277, Evalue=5e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006213
- InterPro:   IPR006214 [H]

Pfam domain/function: PF01027 UPF0005 [H]

EC number: NA

Molecular weight: Translated: 23276; Mature: 23276

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENRVISGAAGNESLLSTHKVLRNTYLLLSMTLAFSAVIAFAAMSMNAPALPWWGLLIGF
CCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
YGLLFLTNATANSSAGILSVFALTGFLGYTLGPILNRYIGAGLGDVVALALGSTALVFFA
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
CSAYVLTTKKDMSFLSGMMMALFVVLLVGIIANIFLAIPALSLAMSALFVVFSSGAILLG
HHHHHEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
TSNIIHGGETNYIRATVDLYVSIYNLFLSLLQIFGVLGSDD
CCCEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MENRVISGAAGNESLLSTHKVLRNTYLLLSMTLAFSAVIAFAAMSMNAPALPWWGLLIGF
CCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
YGLLFLTNATANSSAGILSVFALTGFLGYTLGPILNRYIGAGLGDVVALALGSTALVFFA
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
CSAYVLTTKKDMSFLSGMMMALFVVLLVGIIANIFLAIPALSLAMSALFVVFSSGAILLG
HHHHHEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
TSNIIHGGETNYIRATVDLYVSIYNLFLSLLQIFGVLGSDD
CCCEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]