Definition | Actinobacillus pleuropneumoniae serovar 5b str. L20 chromosome, complete genome. |
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Accession | NC_009053 |
Length | 2,274,482 |
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The map label for this gene is yadS [H]
Identifier: 126207656
GI number: 126207656
Start: 186922
End: 187566
Strand: Direct
Name: yadS [H]
Synonym: APL_0168
Alternate gene names: 126207656
Gene position: 186922-187566 (Clockwise)
Preceding gene: 126207655
Following gene: 126207657
Centisome position: 8.22
GC content: 43.1
Gene sequence:
>645_bases ATGACTAACTTATTCGACAGCTTATTGCCGCCTTTTCCTTGGTCATTCTTATTTATTCAAGATTTGATCGGCACGATCGT ATTTGCCGTATCCGGGGCAATCGCGGCTCGACAACATAAAATGGATATTTTCGGTATGTTCATTTTAGCGTTTGTGACCG GTGTAGGCGGCGGTACGTTGCGTGATGTGATGATCGGCAGTACGCCGGTTTTTTGGATGAAGCAACCGATTTATGTTTTG ATGATCACTCTTGCGGTAATTATCACTGCGGTTTTTAAAAATAATTTCAGTAAAAAAGAGTGGCAAACCGGTTTACTGAT TTTCGATGCGATTGGTTTGGGCGTGTTTACCGTTATTGGTGTGCAAAAAGGCTTGGATTTCGGCTTACATCCGTTGATTG CGATTGCATTAGGCGGAATGACCGGATGTTTCGGTGGGGTTATTCGAGATATTTTGCGTAACGAAGTGCCGATTGTGTTA CAAAAAGAAGTGTATGTCACGGCAAGTCTTATCGGCGGTGTGATTTTTGTGTTGTTCTATTCCGCCGGCGTTGAAAGCCG CTGGGTGGATATTGCCACGGTCGCTACCGTGATTGTGATACGTTTATTAGCGATTCGATTTAATCTAAATTTACCGAGAA TTTAA
Upstream 100 bases:
>100_bases AAAGTTGTAACGGCAACGGAAGCGGAAGACCCACGTAAGGCGACAGTCGCCGCGGCAATTGCTAGAGCGAAAGCGAAAAA AATGAGTCAAGGGTTATCAA
Downstream 100 bases:
>100_bases ACGGGAAAGGAATGATTTGATGTTTAAAATGGTGAGTTCTCCCCATACCCATTCGTCCAATTTAACGGCGAAATTTATGC TATGGGTTATGGTTGCAATG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 214; Mature: 213
Protein sequence:
>214_residues MTNLFDSLLPPFPWSFLFIQDLIGTIVFAVSGAIAARQHKMDIFGMFILAFVTGVGGGTLRDVMIGSTPVFWMKQPIYVL MITLAVIITAVFKNNFSKKEWQTGLLIFDAIGLGVFTVIGVQKGLDFGLHPLIAIALGGMTGCFGGVIRDILRNEVPIVL QKEVYVTASLIGGVIFVLFYSAGVESRWVDIATVATVIVIRLLAIRFNLNLPRI
Sequences:
>Translated_214_residues MTNLFDSLLPPFPWSFLFIQDLIGTIVFAVSGAIAARQHKMDIFGMFILAFVTGVGGGTLRDVMIGSTPVFWMKQPIYVL MITLAVIITAVFKNNFSKKEWQTGLLIFDAIGLGVFTVIGVQKGLDFGLHPLIAIALGGMTGCFGGVIRDILRNEVPIVL QKEVYVTASLIGGVIFVLFYSAGVESRWVDIATVATVIVIRLLAIRFNLNLPRI >Mature_213_residues TNLFDSLLPPFPWSFLFIQDLIGTIVFAVSGAIAARQHKMDIFGMFILAFVTGVGGGTLRDVMIGSTPVFWMKQPIYVLM ITLAVIITAVFKNNFSKKEWQTGLLIFDAIGLGVFTVIGVQKGLDFGLHPLIAIALGGMTGCFGGVIRDILRNEVPIVLQ KEVYVTASLIGGVIFVLFYSAGVESRWVDIATVATVIVIRLLAIRFNLNLPRI
Specific function: Unknown
COG id: COG2860
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0126 family [H]
Homologues:
Organism=Escherichia coli, GI1786352, Length=194, Percent_Identity=39.6907216494845, Blast_Score=127, Evalue=6e-31, Organism=Escherichia coli, GI87082304, Length=163, Percent_Identity=38.6503067484663, Blast_Score=122, Evalue=2e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005115 [H]
Pfam domain/function: PF03458 UPF0126 [H]
EC number: NA
Molecular weight: Translated: 23381; Mature: 23250
Theoretical pI: Translated: 9.61; Mature: 9.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNLFDSLLPPFPWSFLFIQDLIGTIVFAVSGAIAARQHKMDIFGMFILAFVTGVGGGTL CCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH RDVMIGSTPVFWMKQPIYVLMITLAVIITAVFKNNFSKKEWQTGLLIFDAIGLGVFTVIG HHHHHCCCCHHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH VQKGLDFGLHPLIAIALGGMTGCFGGVIRDILRNEVPIVLQKEVYVTASLIGGVIFVLFY HHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHH SAGVESRWVDIATVATVIVIRLLAIRFNLNLPRI HCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure TNLFDSLLPPFPWSFLFIQDLIGTIVFAVSGAIAARQHKMDIFGMFILAFVTGVGGGTL CCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH RDVMIGSTPVFWMKQPIYVLMITLAVIITAVFKNNFSKKEWQTGLLIFDAIGLGVFTVIG HHHHHCCCCHHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH VQKGLDFGLHPLIAIALGGMTGCFGGVIRDILRNEVPIVLQKEVYVTASLIGGVIFVLFY HHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHH SAGVESRWVDIATVATVIVIRLLAIRFNLNLPRI HCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA