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The map label for this gene is rnfC [H]

Identifier: 126207655

GI number: 126207655

Start: 184617

End: 186929

Strand: Direct

Name: rnfC [H]

Synonym: APL_0167

Alternate gene names: 126207655

Gene position: 184617-186929 (Clockwise)

Preceding gene: 126207654

Following gene: 126207656

Centisome position: 8.12

GC content: 48.51

Gene sequence:

>2313_bases
ATGAGTAATGCGATAGCAGTATTGGATCGTATTCGCCAAGGCAACCGATCCGGAGAATTATGGCAATTCCCGGGCGGGAT
TCACCCGATGCAAAATAAAAAGCAATCGAATCAAAAACCGATTCGCAGCTTGCATTTGCCTAAATTTTTCTATGTACCGG
TTGTGCAACATTCGGGTTGGGCGGGCGAACTTTTGGTTAAAGTCGGTGATAACGTATTAAAAGGACAGCCGCTGACCAAA
GGCGATAACTATCGCCAGTTACCGGTACACGCACCGACATCGGGCACGGTTATCGGTATCGAGCCTTATGTGTCGGCACA
TCCGTCCGGTTTACCCGAGATTACCGTGATTATTGAAACGGACGGTAAAGACGAATGGATTGAACGCCGACCGATTGACG
ATTTTTTAACGCTGACAAGCGGTCAAATTATCGAAAAAGTTTACCAATACGGCATTGCCGGTTTGGGCGGTGCGGTATTC
CCGACCGCTTCAAAACTCAGCCTAGCGGATAAGCGTTGCAAAGTATTGATTATCAACGGTGCGGAGTGCGAGCCGTATAT
TACTTGTGACGACCGTTTAATGCAGGATTATACCCACGAGTTTCTTGAGGGGATTCGTATTTTGCGTTACGTGCTACGTC
CGGAAGAAGTGGTGTTAGCGATTGAGGATAATAAACCGCAGGCGATCCAAGCGGTAGAAAAAGCCTTAAAAGGTTCGAAC
GATATTACGTTACGAGTCATCCCGACTATTTATCCGTCCGGTGCAAGCGATCAATTAGTTCAGGTTTTAACCGGTTTGGA
AATTCCGCAAGGCAAACGTTCGATTGAAATGGGCATTGTGATGCACAATGTCGGAACGGTGTTTGCAGTTAAACGTGCGG
TAATGGACGATGAACCGTTAATTGAACGCGTGGTAACACTAACCGGCGATAAAATTCGCAATAAAGGCAATGTGTGGGCA
AGACTCGGAACGCCGATTCAACATTTATTGGAGCAGGTCGATTATCAAGCGGACAGCCGTTTTCCGGTGTTTTTAGGCGG
ACCGATGACCGGTTTTATTTTGCAATCCTTACAAGCGCCGATTACCAAAACGGCAAACTGTATTATTGCGCCGGATCATT
TTGAATACGCGCCGCCGGAGCCTGAGCGCAGTTGTATTCGTTGTTCGAGTTGCTCGGATGCTTGTCCGGTCGGGTTACTG
CCGCAACAGCTTTACTGGTATGCACGCTCGGAAGATCACGATAAGTCAAAAGAATACCATTTGGATGCCTGTATCGAATG
CGGTGTCTGCGCTTACGTTTGCCCGAGTTATATTCCGCTGATTCAATATTTTCGCCAAGAAAAGGCAAAAATAACGGAAA
TCGAAGAAAAAGCGAAAAAAGCGGAAGAGGCGAAAGCTCGTTTTGAAGCGAGAGAAGCTCGCTTGCAAAAAGAAAAAGAT
GCTCGAACCGCACGTATCGCACAAGCGGCGGATAAACGCCGAGAAGAAATAGCAAATTCTGCCGGTGAAGATCCGGTAGC
CGCCGCTTTGGCTCGAATCAAAGCAAAAAAAGCGGAAGCACAAACTGCAGAGCCTGTACAAGCTAAAGCAAACGGCGAGC
CGGATAATAGCGAATTAATGGCACAACGCCGAGCAAGACGTTTGGCAAAACAGGCCGAAGTTAAAAATGAAGTAAATGAC
AATCTTTCTATCAATACTGTGCAGCAAGTAGAAGAGACTGATCCTAAGAAAGCTGCGGTTGCTGCCGCATTAGCGCGTGC
AAGAGCGAAAAAAGCAGCCCAAGCGCCGGAACAAGCGGTCGAAAATGCTGAAAAATTTGCAACAGCCACAGAGGCGGAAG
ACCCACGTAAAGCGGCGGTGGCAGCGGCATTAGCCCGAGCAAAAGCGAAAAAAGCGGCACAACAAGCCGATCAGCAAGAA
CAGGTACAAGCGGGCGAAAATACCGAAAAAGTTGCAGCTGCAAACGAAGCGGAAGACCCGCGTAAAGCGGCGGTCGCGGC
AGCGTTAGCCAGAGCCAAAGCGAAAAAAGCGGCACAACAAGCCGATCAGCAAGAACAGGCGCAAGCGGTTGAAAATACCG
GAAAAGTTGCAACCGCAACAGAAACGGAAGACCCGCGTAAAGCAGCGGTCGCAGCAGCATTAGCCAGAGCTAAAGCGAAA
AAAGCAACTCAGCAAGAACAGCTACAAGCGGTCGAAAATGCCGAAAAAGTTGTAACGGCAACGGAAGCGGAAGACCCACG
TAAGGCGACAGTCGCCGCGGCAATTGCTAGAGCGAAAGCGAAAAAAATGAGTCAAGGGTTATCAAATGACTAA

Upstream 100 bases:

>100_bases
ACAACCAAAACGTGGAATTGGCAATTTGACGAGAATTTAGTCATTCCGGTGGTAAATACGACAGAGTTACAGAAAAAATT
GGTGATTGGCGGAGGTAAAA

Downstream 100 bases:

>100_bases
CTTATTCGACAGCTTATTGCCGCCTTTTCCTTGGTCATTCTTATTTATTCAAGATTTGATCGGCACGATCGTATTTGCCG
TATCCGGGGCAATCGCGGCT

Product: electron transport complex protein RnfC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 770; Mature: 769

Protein sequence:

>770_residues
MSNAIAVLDRIRQGNRSGELWQFPGGIHPMQNKKQSNQKPIRSLHLPKFFYVPVVQHSGWAGELLVKVGDNVLKGQPLTK
GDNYRQLPVHAPTSGTVIGIEPYVSAHPSGLPEITVIIETDGKDEWIERRPIDDFLTLTSGQIIEKVYQYGIAGLGGAVF
PTASKLSLADKRCKVLIINGAECEPYITCDDRLMQDYTHEFLEGIRILRYVLRPEEVVLAIEDNKPQAIQAVEKALKGSN
DITLRVIPTIYPSGASDQLVQVLTGLEIPQGKRSIEMGIVMHNVGTVFAVKRAVMDDEPLIERVVTLTGDKIRNKGNVWA
RLGTPIQHLLEQVDYQADSRFPVFLGGPMTGFILQSLQAPITKTANCIIAPDHFEYAPPEPERSCIRCSSCSDACPVGLL
PQQLYWYARSEDHDKSKEYHLDACIECGVCAYVCPSYIPLIQYFRQEKAKITEIEEKAKKAEEAKARFEAREARLQKEKD
ARTARIAQAADKRREEIANSAGEDPVAAALARIKAKKAEAQTAEPVQAKANGEPDNSELMAQRRARRLAKQAEVKNEVND
NLSINTVQQVEETDPKKAAVAAALARARAKKAAQAPEQAVENAEKFATATEAEDPRKAAVAAALARAKAKKAAQQADQQE
QVQAGENTEKVAAANEAEDPRKAAVAAALARAKAKKAAQQADQQEQAQAVENTGKVATATETEDPRKAAVAAALARAKAK
KATQQEQLQAVENAEKVVTATEAEDPRKATVAAAIARAKAKKMSQGLSND

Sequences:

>Translated_770_residues
MSNAIAVLDRIRQGNRSGELWQFPGGIHPMQNKKQSNQKPIRSLHLPKFFYVPVVQHSGWAGELLVKVGDNVLKGQPLTK
GDNYRQLPVHAPTSGTVIGIEPYVSAHPSGLPEITVIIETDGKDEWIERRPIDDFLTLTSGQIIEKVYQYGIAGLGGAVF
PTASKLSLADKRCKVLIINGAECEPYITCDDRLMQDYTHEFLEGIRILRYVLRPEEVVLAIEDNKPQAIQAVEKALKGSN
DITLRVIPTIYPSGASDQLVQVLTGLEIPQGKRSIEMGIVMHNVGTVFAVKRAVMDDEPLIERVVTLTGDKIRNKGNVWA
RLGTPIQHLLEQVDYQADSRFPVFLGGPMTGFILQSLQAPITKTANCIIAPDHFEYAPPEPERSCIRCSSCSDACPVGLL
PQQLYWYARSEDHDKSKEYHLDACIECGVCAYVCPSYIPLIQYFRQEKAKITEIEEKAKKAEEAKARFEAREARLQKEKD
ARTARIAQAADKRREEIANSAGEDPVAAALARIKAKKAEAQTAEPVQAKANGEPDNSELMAQRRARRLAKQAEVKNEVND
NLSINTVQQVEETDPKKAAVAAALARARAKKAAQAPEQAVENAEKFATATEAEDPRKAAVAAALARAKAKKAAQQADQQE
QVQAGENTEKVAAANEAEDPRKAAVAAALARAKAKKAAQQADQQEQAQAVENTGKVATATETEDPRKAAVAAALARAKAK
KATQQEQLQAVENAEKVVTATEAEDPRKATVAAAIARAKAKKMSQGLSND
>Mature_769_residues
SNAIAVLDRIRQGNRSGELWQFPGGIHPMQNKKQSNQKPIRSLHLPKFFYVPVVQHSGWAGELLVKVGDNVLKGQPLTKG
DNYRQLPVHAPTSGTVIGIEPYVSAHPSGLPEITVIIETDGKDEWIERRPIDDFLTLTSGQIIEKVYQYGIAGLGGAVFP
TASKLSLADKRCKVLIINGAECEPYITCDDRLMQDYTHEFLEGIRILRYVLRPEEVVLAIEDNKPQAIQAVEKALKGSND
ITLRVIPTIYPSGASDQLVQVLTGLEIPQGKRSIEMGIVMHNVGTVFAVKRAVMDDEPLIERVVTLTGDKIRNKGNVWAR
LGTPIQHLLEQVDYQADSRFPVFLGGPMTGFILQSLQAPITKTANCIIAPDHFEYAPPEPERSCIRCSSCSDACPVGLLP
QQLYWYARSEDHDKSKEYHLDACIECGVCAYVCPSYIPLIQYFRQEKAKITEIEEKAKKAEEAKARFEAREARLQKEKDA
RTARIAQAADKRREEIANSAGEDPVAAALARIKAKKAEAQTAEPVQAKANGEPDNSELMAQRRARRLAKQAEVKNEVNDN
LSINTVQQVEETDPKKAAVAAALARARAKKAAQAPEQAVENAEKFATATEAEDPRKAAVAAALARAKAKKAAQQADQQEQ
VQAGENTEKVAAANEAEDPRKAAVAAALARAKAKKAAQQADQQEQAQAVENTGKVATATETEDPRKAAVAAALARAKAKK
ATQQEQLQAVENAEKVVTATEAEDPRKATVAAAIARAKAKKMSQGLSND

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=568, Percent_Identity=51.9366197183099, Blast_Score=596, Evalue=1e-171,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554 [H]

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 84015; Mature: 83884

Theoretical pI: Translated: 8.00; Mature: 8.00

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNAIAVLDRIRQGNRSGELWQFPGGIHPMQNKKQSNQKPIRSLHLPKFFYVPVVQHSGW
CCHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCHHHHCCCCEEEEEEECCCCC
AGELLVKVGDNVLKGQPLTKGDNYRQLPVHAPTSGTVIGIEPYVSAHPSGLPEITVIIET
HHHHHHHHCCHHHCCCCCCCCCCCEECCEECCCCCCEEEECCCCCCCCCCCCEEEEEEEC
DGKDEWIERRPIDDFLTLTSGQIIEKVYQYGIAGLGGAVFPTASKLSLADKRCKVLIING
CCCHHHHHHCCCHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCEEEEEEC
AECEPYITCDDRLMQDYTHEFLEGIRILRYVLRPEEVVLAIEDNKPQAIQAVEKALKGSN
CCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCCC
DITLRVIPTIYPSGASDQLVQVLTGLEIPQGKRSIEMGIVMHNVGTVFAVKRAVMDDEPL
CEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHH
IERVVTLTGDKIRNKGNVWARLGTPIQHLLEQVDYQADSRFPVFLGGPMTGFILQSLQAP
HHHHHHHCCHHHCCCCCEEEECCCHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHCC
ITKTANCIIAPDHFEYAPPEPERSCIRCSSCSDACPVGLLPQQLYWYARSEDHDKSKEYH
HHHCCCEEECCCCCCCCCCCCHHHHEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHH
LDACIECGVCAYVCPSYIPLIQYFRQEKAKITEIEEKAKKAEEAKARFEAREARLQKEKD
HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARTARIAQAADKRREEIANSAGEDPVAAALARIKAKKAEAQTAEPVQAKANGEPDNSELM
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH
AQRRARRLAKQAEVKNEVNDNLSINTVQQVEETDPKKAAVAAALARARAKKAAQAPEQAV
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHH
ENAEKFATATEAEDPRKAAVAAALARAKAKKAAQQADQQEQVQAGENTEKVAAANEAEDP
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHCCCCCCCH
RKAAVAAALARAKAKKAAQQADQQEQAQAVENTGKVATATETEDPRKAAVAAALARAKAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHH
KATQQEQLQAVENAEKVVTATEAEDPRKATVAAAIARAKAKKMSQGLSND
HHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SNAIAVLDRIRQGNRSGELWQFPGGIHPMQNKKQSNQKPIRSLHLPKFFYVPVVQHSGW
CHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCHHHHCCCCEEEEEEECCCCC
AGELLVKVGDNVLKGQPLTKGDNYRQLPVHAPTSGTVIGIEPYVSAHPSGLPEITVIIET
HHHHHHHHCCHHHCCCCCCCCCCCEECCEECCCCCCEEEECCCCCCCCCCCCEEEEEEEC
DGKDEWIERRPIDDFLTLTSGQIIEKVYQYGIAGLGGAVFPTASKLSLADKRCKVLIING
CCCHHHHHHCCCHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCEEEEEEC
AECEPYITCDDRLMQDYTHEFLEGIRILRYVLRPEEVVLAIEDNKPQAIQAVEKALKGSN
CCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCCC
DITLRVIPTIYPSGASDQLVQVLTGLEIPQGKRSIEMGIVMHNVGTVFAVKRAVMDDEPL
CEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHH
IERVVTLTGDKIRNKGNVWARLGTPIQHLLEQVDYQADSRFPVFLGGPMTGFILQSLQAP
HHHHHHHCCHHHCCCCCEEEECCCHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHCC
ITKTANCIIAPDHFEYAPPEPERSCIRCSSCSDACPVGLLPQQLYWYARSEDHDKSKEYH
HHHCCCEEECCCCCCCCCCCCHHHHEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHH
LDACIECGVCAYVCPSYIPLIQYFRQEKAKITEIEEKAKKAEEAKARFEAREARLQKEKD
HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARTARIAQAADKRREEIANSAGEDPVAAALARIKAKKAEAQTAEPVQAKANGEPDNSELM
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH
AQRRARRLAKQAEVKNEVNDNLSINTVQQVEETDPKKAAVAAALARARAKKAAQAPEQAV
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHH
ENAEKFATATEAEDPRKAAVAAALARAKAKKAAQQADQQEQVQAGENTEKVAAANEAEDP
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHCCCCCCCH
RKAAVAAALARAKAKKAAQQADQQEQAQAVENTGKVATATETEDPRKAAVAAALARAKAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHH
KATQQEQLQAVENAEKVVTATEAEDPRKATVAAAIARAKAKKMSQGLSND
HHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA