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The map label for this gene is ygdH [H]

Identifier: 126207633

GI number: 126207633

Start: 161499

End: 162878

Strand: Reverse

Name: ygdH [H]

Synonym: APL_0145

Alternate gene names: 126207633

Gene position: 162878-161499 (Counterclockwise)

Preceding gene: 126207634

Following gene: 126207632

Centisome position: 7.16

GC content: 44.42

Gene sequence:

>1380_bases
ATGGCCGTTCATTGCGTCAATCCAAAAGGTAGCCTTGACCAACTATCTCACTTAGAGATGGAATTACTCACCAAAAATGC
GCAAGGCAATCTCTATTCACTCTATCGAAACTGCTCTCTTGCCGTACTGAACTCAGGTGCGGTAACCGACGATAGTCGCG
CACTTCTTAATCAATATCCCGACTTCGACATTAACTTGCTTACTAAAGAAAAAGGCGTATCGCTCGAATTGCATAACCCG
CCGAAATCCGCCTTTGTCGATGGCAAAATGATCGTCAACATTCAATATCATTTATTTGCGGTGTTACGCGATATTGTGTT
TGTCAATGCGCTTTACCAATACATCGGGCAACATACTTCGCCGCAGGAAGATAATAAATATATTACTAATCTTGTGTTTT
CGATTTTACGCAACGCCAAAGCGTTGGAAATCGGATCGGATCCGAATCTGATTGTTTGCTGGGGCGGACACTCGATTAAT
CAAACCGAATATCAATATTGCCGTGCGGTCGGTACGGAACTCGGATTACGCCAATTTAATATCGTCACCGGCTGCGGCAC
CGGCGTAATGGAAGCTCCGATGAAAGGAGCTACCATCGGTCACGCTAATCAACGTTATAAACACAGTCGTTTTATTGGAA
TTACCGAGCCTTCGATTATTGCCTCCGAGCCGCCGAATCCGATCGTAACCGAATTAATCATTATGCCGGATATCGAAAAA
CGTCTGGAAGCGTTCGTACGTATGGGACACGGTATTGTGATCTTCCCAGGCGGTCCCGGCACATTAGAAGAGTTACTCTA
TATTTTAGGCGTGAAACTGAATCCGGCGAATAAAGCGCAAAAACTGCCGGTTATTCTTACCGCACCGAAAGAAAGTGCCG
ACTATTTTACCGCTATCGACCGATTCATCGGTGAAACCTTAGGTAAAGAAGCGCAACAAATGTATGAAATTATCATCGAT
GATCCGATATTGGTCGCACAAAGAATGGCGAAAGCGATGAAAGAAATCAAACAACAACGCTTAGAGCTTGCCGATTCGTA
TAGCTTTAACTGGTCTTTGCATATTTCCGATGAATTTACCCATCCGTTTGAGCCGACCCATCAAAATATGAGCGATTTGA
ATTTACATTTTGATCAGCCGACCGAACGGCTTGCGGCGAATTTACGCCGAGCGTTTTCCGGTATTGTGGCGGGTAATATC
AAACCGGCAACACAAGATTTGATCGAACAATTCGGCCCGTTCCAGTTACAAGGCGATCGCAAATTATTGGATAAAATCGA
CCGCTTGTTACAAACGTTTATTACTCAACACCGAATGAAATTGCCGACCGGAGAAGCTTATAAACCATGCTACCAAATTC
TGCCGAATACGGAGAAATAG

Upstream 100 bases:

>100_bases
TGGTGGAACAAGCGCTTAGCTTTGTACAAGAAAGTAATTAAATTTGCTATTTCCCCCTTAAATTCAGATAATGTTTTTAT
TTGGATTTAAGGGAAAACTT

Downstream 100 bases:

>100_bases
GATATGTATTTACAACAAATTGAAATTTCGGGTTTTCGCGGCATTAATCATCTTTCTCTCACGCTACGCCCGAATATGGT
CTTGATTGGCGAAAATGCGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 459; Mature: 458

Protein sequence:

>459_residues
MAVHCVNPKGSLDQLSHLEMELLTKNAQGNLYSLYRNCSLAVLNSGAVTDDSRALLNQYPDFDINLLTKEKGVSLELHNP
PKSAFVDGKMIVNIQYHLFAVLRDIVFVNALYQYIGQHTSPQEDNKYITNLVFSILRNAKALEIGSDPNLIVCWGGHSIN
QTEYQYCRAVGTELGLRQFNIVTGCGTGVMEAPMKGATIGHANQRYKHSRFIGITEPSIIASEPPNPIVTELIIMPDIEK
RLEAFVRMGHGIVIFPGGPGTLEELLYILGVKLNPANKAQKLPVILTAPKESADYFTAIDRFIGETLGKEAQQMYEIIID
DPILVAQRMAKAMKEIKQQRLELADSYSFNWSLHISDEFTHPFEPTHQNMSDLNLHFDQPTERLAANLRRAFSGIVAGNI
KPATQDLIEQFGPFQLQGDRKLLDKIDRLLQTFITQHRMKLPTGEAYKPCYQILPNTEK

Sequences:

>Translated_459_residues
MAVHCVNPKGSLDQLSHLEMELLTKNAQGNLYSLYRNCSLAVLNSGAVTDDSRALLNQYPDFDINLLTKEKGVSLELHNP
PKSAFVDGKMIVNIQYHLFAVLRDIVFVNALYQYIGQHTSPQEDNKYITNLVFSILRNAKALEIGSDPNLIVCWGGHSIN
QTEYQYCRAVGTELGLRQFNIVTGCGTGVMEAPMKGATIGHANQRYKHSRFIGITEPSIIASEPPNPIVTELIIMPDIEK
RLEAFVRMGHGIVIFPGGPGTLEELLYILGVKLNPANKAQKLPVILTAPKESADYFTAIDRFIGETLGKEAQQMYEIIID
DPILVAQRMAKAMKEIKQQRLELADSYSFNWSLHISDEFTHPFEPTHQNMSDLNLHFDQPTERLAANLRRAFSGIVAGNI
KPATQDLIEQFGPFQLQGDRKLLDKIDRLLQTFITQHRMKLPTGEAYKPCYQILPNTEK
>Mature_458_residues
AVHCVNPKGSLDQLSHLEMELLTKNAQGNLYSLYRNCSLAVLNSGAVTDDSRALLNQYPDFDINLLTKEKGVSLELHNPP
KSAFVDGKMIVNIQYHLFAVLRDIVFVNALYQYIGQHTSPQEDNKYITNLVFSILRNAKALEIGSDPNLIVCWGGHSINQ
TEYQYCRAVGTELGLRQFNIVTGCGTGVMEAPMKGATIGHANQRYKHSRFIGITEPSIIASEPPNPIVTELIIMPDIEKR
LEAFVRMGHGIVIFPGGPGTLEELLYILGVKLNPANKAQKLPVILTAPKESADYFTAIDRFIGETLGKEAQQMYEIIIDD
PILVAQRMAKAMKEIKQQRLELADSYSFNWSLHISDEFTHPFEPTHQNMSDLNLHFDQPTERLAANLRRAFSGIVAGNIK
PATQDLIEQFGPFQLQGDRKLLDKIDRLLQTFITQHRMKLPTGEAYKPCYQILPNTEK

Specific function: Unknown

COG id: COG1611

COG function: function code R; Predicted Rossmann fold nucleotide-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LOG family [H]

Homologues:

Organism=Escherichia coli, GI1789159, Length=449, Percent_Identity=60.8017817371938, Blast_Score=584, Evalue=1e-168,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021826
- InterPro:   IPR005269 [H]

Pfam domain/function: PF11892 DUF3412; PF03641 Lysine_decarbox [H]

EC number: NA

Molecular weight: Translated: 51521; Mature: 51390

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVHCVNPKGSLDQLSHLEMELLTKNAQGNLYSLYRNCSLAVLNSGAVTDDSRALLNQYP
CEEEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCEEEEEECCCCCCHHHHHHHCCC
DFDINLLTKEKGVSLELHNPPKSAFVDGKMIVNIQYHLFAVLRDIVFVNALYQYIGQHTS
CCCEEEEEECCCCEEEECCCCCCCEECCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCC
PQEDNKYITNLVFSILRNAKALEIGSDPNLIVCWGGHSINQTEYQYCRAVGTELGLRQFN
CCCCHHHHHHHHHHHHCCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEE
IVTGCGTGVMEAPMKGATIGHANQRYKHSRFIGITEPSIIASEPPNPIVTELIIMPDIEK
EEEECCCCHHHCCCCCCEECCCHHHHCCCEEEECCCCCEECCCCCCHHHHHEEECCCHHH
RLEAFVRMGHGIVIFPGGPGTLEELLYILGVKLNPANKAQKLPVILTAPKESADYFTAID
HHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCHHHHHHHH
RFIGETLGKEAQQMYEIIIDDPILVAQRMAKAMKEIKQQRLELADSYSFNWSLHISDEFT
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCC
HPFEPTHQNMSDLNLHFDQPTERLAANLRRAFSGIVAGNIKPATQDLIEQFGPFQLQGDR
CCCCCCCCCHHHCEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCCH
KLLDKIDRLLQTFITQHRMKLPTGEAYKPCYQILPNTEK
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCC
>Mature Secondary Structure 
AVHCVNPKGSLDQLSHLEMELLTKNAQGNLYSLYRNCSLAVLNSGAVTDDSRALLNQYP
EEEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCEEEEEECCCCCCHHHHHHHCCC
DFDINLLTKEKGVSLELHNPPKSAFVDGKMIVNIQYHLFAVLRDIVFVNALYQYIGQHTS
CCCEEEEEECCCCEEEECCCCCCCEECCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCC
PQEDNKYITNLVFSILRNAKALEIGSDPNLIVCWGGHSINQTEYQYCRAVGTELGLRQFN
CCCCHHHHHHHHHHHHCCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEE
IVTGCGTGVMEAPMKGATIGHANQRYKHSRFIGITEPSIIASEPPNPIVTELIIMPDIEK
EEEECCCCHHHCCCCCCEECCCHHHHCCCEEEECCCCCEECCCCCCHHHHHEEECCCHHH
RLEAFVRMGHGIVIFPGGPGTLEELLYILGVKLNPANKAQKLPVILTAPKESADYFTAID
HHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCHHHHHHHH
RFIGETLGKEAQQMYEIIIDDPILVAQRMAKAMKEIKQQRLELADSYSFNWSLHISDEFT
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCC
HPFEPTHQNMSDLNLHFDQPTERLAANLRRAFSGIVAGNIKPATQDLIEQFGPFQLQGDR
CCCCCCCCCHHHCEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCCH
KLLDKIDRLLQTFITQHRMKLPTGEAYKPCYQILPNTEK
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]