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The map label for this gene is rraB [H]

Identifier: 126207581

GI number: 126207581

Start: 99327

End: 99767

Strand: Reverse

Name: rraB [H]

Synonym: APL_0093

Alternate gene names: 126207581

Gene position: 99767-99327 (Counterclockwise)

Preceding gene: 126207582

Following gene: 126207579

Centisome position: 4.39

GC content: 41.5

Gene sequence:

>441_bases
ATGTACGATTTAAACGAATTACGCCAAGAAACGGACGAGATCATCGAAAACCTATTAAACGACGGTTCGGATCCGGAAGC
ACTTTATATTATCGAACACCACGTGGCACACCGTGATTTTGATAAACTGGAAAAATTAGTAGTTGATGCTTATAAACTCG
GCTATGAAATTTCCGAAGCGGAAGAAGTGGAAGAAGAGAACGGTAAAGTGATCTTCGTGTGCGATATCGTGAGCGAAGTC
AATTTAAATGCCGACATCATTACCGCCCAACAAAAAGAATTACTGCCGCTGATTGAAAAAGTCGGTGCGGAATATGAAGG
CTGGGGCACTTATTTTGAAGATCCGAATGCGGAAGATGATGAATACGGTGAAGACGGCGAATTCTTTGATGACCAAGATG
AAGATTTCGAGTTTGACCAAGAAGAAATTACACGTCACTAA

Upstream 100 bases:

>100_bases
GTCGAAGCCTATTCCGCTTTAAACAAAGTCGGTATCGATAAACTTTCCGGTAAATTGGATAGCTGGTTTGCCGAGCAATT
CCTCAATCAAGGAGCATAAT

Downstream 100 bases:

>100_bases
TAGTTAAAAAATCCCCCATACATTTGTGTGGGGGATTATTTTATTGTGCTTAAAGCCCTTTTTTGACCCAATAACGATAC
GGGGTATTTTCCGTTTCGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 146

Protein sequence:

>146_residues
MYDLNELRQETDEIIENLLNDGSDPEALYIIEHHVAHRDFDKLEKLVVDAYKLGYEISEAEEVEEENGKVIFVCDIVSEV
NLNADIITAQQKELLPLIEKVGAEYEGWGTYFEDPNAEDDEYGEDGEFFDDQDEDFEFDQEEITRH

Sequences:

>Translated_146_residues
MYDLNELRQETDEIIENLLNDGSDPEALYIIEHHVAHRDFDKLEKLVVDAYKLGYEISEAEEVEEENGKVIFVCDIVSEV
NLNADIITAQQKELLPLIEKVGAEYEGWGTYFEDPNAEDDEYGEDGEFFDDQDEDFEFDQEEITRH
>Mature_146_residues
MYDLNELRQETDEIIENLLNDGSDPEALYIIEHHVAHRDFDKLEKLVVDAYKLGYEISEAEEVEEENGKVIFVCDIVSEV
NLNADIITAQQKELLPLIEKVGAEYEGWGTYFEDPNAEDDEYGEDGEFFDDQDEDFEFDQEEITRH

Specific function: Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome [H]

COG id: COG3076

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraB family [H]

Homologues:

Organism=Escherichia coli, GI1790704, Length=114, Percent_Identity=57.8947368421053, Blast_Score=137, Evalue=3e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009671
- InterPro:   IPR016716 [H]

Pfam domain/function: PF06877 DUF1260 [H]

EC number: NA

Molecular weight: Translated: 17000; Mature: 17000

Theoretical pI: Translated: 3.63; Mature: 3.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYDLNELRQETDEIIENLLNDGSDPEALYIIEHHVAHRDFDKLEKLVVDAYKLGYEISEA
CCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHCCCCHHH
EEVEEENGKVIFVCDIVSEVNLNADIITAQQKELLPLIEKVGAEYEGWGTYFEDPNAEDD
HHHHHCCCCEEEEEECCHHCCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
EYGEDGEFFDDQDEDFEFDQEEITRH
CCCCCCCCCCCCCCCCCCCHHHHCCC
>Mature Secondary Structure
MYDLNELRQETDEIIENLLNDGSDPEALYIIEHHVAHRDFDKLEKLVVDAYKLGYEISEA
CCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHCCCCHHH
EEVEEENGKVIFVCDIVSEVNLNADIITAQQKELLPLIEKVGAEYEGWGTYFEDPNAEDD
HHHHHCCCCEEEEEECCHHCCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
EYGEDGEFFDDQDEDFEFDQEEITRH
CCCCCCCCCCCCCCCCCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA