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The map label for this gene is ydgI [H]

Identifier: 126175290

GI number: 126175290

Start: 3615223

End: 3616623

Strand: Reverse

Name: ydgI [H]

Synonym: Sbal_3089

Alternate gene names: 126175290

Gene position: 3616623-3615223 (Counterclockwise)

Preceding gene: 126175291

Following gene: 126175287

Centisome position: 70.54

GC content: 53.25

Gene sequence:

>1401_bases
ATGAAAGAGAACAGGATAGGTCTCTGGTCACTCACAGCCCTAGTGTTCAGCTCTATGGTAGGTGCGGGGATTTTTAGCCT
GCCGCAAAACATGGCCGAAGTGGCGGGTGTTCGAGCAGTGCTGATTGGCTGGGGGATCACAGGTGTGGGCATCTTGGCAT
TGGCTGCGAGTTTCCTCTATCTGTCGCGCTTGAAGCCTGAGCTTGATGGCGGCATTTATACCTACGCCAGAGCCGGTTTT
GGTGAGCTAGTGGGCTTTTTTTCTGCTTGGGGCTACTGGCTTTGCGCCACCATAGGCGTGGTGGGATATTTAGTGATTGC
GTTTGCCGCCCTTGGCAGCTTTGTCGATACGCCGCAGCAAGTTTGGTTTGGCGAGGGTAATACGCTGGCCGCTTTTATCG
GTGAGTCGTGCATTTTGTGGGCGGTGCATTGGTTGGTCTCCCGCGGCGTACAGCAGGCGGCCATGTTCAATCTGGTGGCG
ACATTGGCCAAGAGTTTGCCGTTATTGCTATTCGTACTGTTTGCTTGCTATTACTTTGACCCTGTGACTTTTGCTCAGGA
CCAAGCGGCCAGCACTTTAGCTGTGCCTGTGTCTGAACAAGTGCGTAACACTATGCTGATCACGCTTTGGGTATTTACCG
GTATCGAAGGTGCGGCAGTGTTATCGGCGCGTGCCAAAAATAAGCGGGATGTGGGCACGGCGACAGTCCTTGGCGTCGTG
CTGGCGCTACTACTTTATGTACTTATCTCTGTGTTAGCGCTGGGAATTTTGGCTCGTCCTGAACTTGCTGCGCTGCCTAA
TCCCTCCATGGCGGGACTGATGGGGCACATGAGCGGCTCTTGGGGTAAGGCGCTGATCAGCGTCGGGCTTATTGTTTCTG
TGTTGGCCTCCTACGTGAGTTGGACCCTGTTCTCGGCAGAGGTGCCTTTCAGCGCAGCCCGCCACGGTGCTTTCCCTGCC
ATCTTTTTGCGGCAGAATCGCAATGGCACACCTATCGCTTCCCTCTGGTTATCTAGCTTAACAGTGCAGTTTTGTTTGTT
ACTGGTGTGGCTGCTGGGTAAGGGGTATACCAATCTGCTACTCATTTCTACGTCGATGATTTTAGTGCCTTACCTATTGA
TTGGACTGTTCCTGCTGAAGCTTTCTTTGAGTGGACAGGGCAATGGGCTGATGAGAATCGTCGCGCTAGTGGCGAGCGGT
TATGGACTCTGGCTACTCTATGCCGCAGGCGTCGAGTATCTGTTGCTGTCCTTGCTACTCTACGGCCCCGGGTTACTCTT
GTTTCTTTACAGTCGCCGCCAAGTTGTCGATGGTAAAAAGCTTAACGGACGTGAGCGATTGCTCGCGGGGGCGACGCTGC
TGAGTTTGTTCCCCGCGTTATGGTCTTTTTGTTATCAATAA

Upstream 100 bases:

>100_bases
GCGTTGGCGCGCGGCAGGGGCTTCGCTTATCGGTGGTTGCTGCGGCATTGGTCCCGAACACATTCAGGCTCTTTCTACTC
GTTTGCGCTAAGGATTTTGT

Downstream 100 bases:

>100_bases
AGGATTGCTGTTGGTTAAAGTGGGCAGTGCTTTATCGAATTGGGCATAAAAAAATCGGCCACAACAGTTGTTGTGGCCGA
TTTCACTAAAACACGTGGGA

Product: amino acid permease-associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 466; Mature: 466

Protein sequence:

>466_residues
MKENRIGLWSLTALVFSSMVGAGIFSLPQNMAEVAGVRAVLIGWGITGVGILALAASFLYLSRLKPELDGGIYTYARAGF
GELVGFFSAWGYWLCATIGVVGYLVIAFAALGSFVDTPQQVWFGEGNTLAAFIGESCILWAVHWLVSRGVQQAAMFNLVA
TLAKSLPLLLFVLFACYYFDPVTFAQDQAASTLAVPVSEQVRNTMLITLWVFTGIEGAAVLSARAKNKRDVGTATVLGVV
LALLLYVLISVLALGILARPELAALPNPSMAGLMGHMSGSWGKALISVGLIVSVLASYVSWTLFSAEVPFSAARHGAFPA
IFLRQNRNGTPIASLWLSSLTVQFCLLLVWLLGKGYTNLLLISTSMILVPYLLIGLFLLKLSLSGQGNGLMRIVALVASG
YGLWLLYAAGVEYLLLSLLLYGPGLLLFLYSRRQVVDGKKLNGRERLLAGATLLSLFPALWSFCYQ

Sequences:

>Translated_466_residues
MKENRIGLWSLTALVFSSMVGAGIFSLPQNMAEVAGVRAVLIGWGITGVGILALAASFLYLSRLKPELDGGIYTYARAGF
GELVGFFSAWGYWLCATIGVVGYLVIAFAALGSFVDTPQQVWFGEGNTLAAFIGESCILWAVHWLVSRGVQQAAMFNLVA
TLAKSLPLLLFVLFACYYFDPVTFAQDQAASTLAVPVSEQVRNTMLITLWVFTGIEGAAVLSARAKNKRDVGTATVLGVV
LALLLYVLISVLALGILARPELAALPNPSMAGLMGHMSGSWGKALISVGLIVSVLASYVSWTLFSAEVPFSAARHGAFPA
IFLRQNRNGTPIASLWLSSLTVQFCLLLVWLLGKGYTNLLLISTSMILVPYLLIGLFLLKLSLSGQGNGLMRIVALVASG
YGLWLLYAAGVEYLLLSLLLYGPGLLLFLYSRRQVVDGKKLNGRERLLAGATLLSLFPALWSFCYQ
>Mature_466_residues
MKENRIGLWSLTALVFSSMVGAGIFSLPQNMAEVAGVRAVLIGWGITGVGILALAASFLYLSRLKPELDGGIYTYARAGF
GELVGFFSAWGYWLCATIGVVGYLVIAFAALGSFVDTPQQVWFGEGNTLAAFIGESCILWAVHWLVSRGVQQAAMFNLVA
TLAKSLPLLLFVLFACYYFDPVTFAQDQAASTLAVPVSEQVRNTMLITLWVFTGIEGAAVLSARAKNKRDVGTATVLGVV
LALLLYVLISVLALGILARPELAALPNPSMAGLMGHMSGSWGKALISVGLIVSVLASYVSWTLFSAEVPFSAARHGAFPA
IFLRQNRNGTPIASLWLSSLTVQFCLLLVWLLGKGYTNLLLISTSMILVPYLLIGLFLLKLSLSGQGNGLMRIVALVASG
YGLWLLYAAGVEYLLLSLLLYGPGLLLFLYSRRQVVDGKKLNGRERLLAGATLLSLFPALWSFCYQ

Specific function: Catalyzes an electroneutral exchange between arginine and ornithine to allow high-efficiency energy conversion in the arginine deiminase pathway [H]

COG id: COG0531

COG function: function code E; Amino acid transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787890, Length=459, Percent_Identity=59.041394335512, Blast_Score=517, Evalue=1e-148,
Organism=Escherichia coli, GI2367353, Length=429, Percent_Identity=29.3706293706294, Blast_Score=128, Evalue=7e-31,
Organism=Escherichia coli, GI1786908, Length=428, Percent_Identity=24.5327102803738, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1790575, Length=445, Percent_Identity=24.4943820224719, Blast_Score=87, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002293
- InterPro:   IPR004754 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50090; Mature: 50090

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKENRIGLWSLTALVFSSMVGAGIFSLPQNMAEVAGVRAVLIGWGITGVGILALAASFLY
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
LSRLKPELDGGIYTYARAGFGELVGFFSAWGYWLCATIGVVGYLVIAFAALGSFVDTPQQ
HHHCCHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
VWFGEGNTLAAFIGESCILWAVHWLVSRGVQQAAMFNLVATLAKSLPLLLFVLFACYYFD
HEECCCCEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PVTFAQDQAASTLAVPVSEQVRNTMLITLWVFTGIEGAAVLSARAKNKRDVGTATVLGVV
CCCCCHHHCCCEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHH
LALLLYVLISVLALGILARPELAALPNPSMAGLMGHMSGSWGKALISVGLIVSVLASYVS
HHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
WTLFSAEVPFSAARHGAFPAIFLRQNRNGTPIASLWLSSLTVQFCLLLVWLLGKGYTNLL
HHHHCCCCCHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
LISTSMILVPYLLIGLFLLKLSLSGQGNGLMRIVALVASGYGLWLLYAAGVEYLLLSLLL
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
YGPGLLLFLYSRRQVVDGKKLNGRERLLAGATLLSLFPALWSFCYQ
HCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKENRIGLWSLTALVFSSMVGAGIFSLPQNMAEVAGVRAVLIGWGITGVGILALAASFLY
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
LSRLKPELDGGIYTYARAGFGELVGFFSAWGYWLCATIGVVGYLVIAFAALGSFVDTPQQ
HHHCCHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
VWFGEGNTLAAFIGESCILWAVHWLVSRGVQQAAMFNLVATLAKSLPLLLFVLFACYYFD
HEECCCCEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PVTFAQDQAASTLAVPVSEQVRNTMLITLWVFTGIEGAAVLSARAKNKRDVGTATVLGVV
CCCCCHHHCCCEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHH
LALLLYVLISVLALGILARPELAALPNPSMAGLMGHMSGSWGKALISVGLIVSVLASYVS
HHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
WTLFSAEVPFSAARHGAFPAIFLRQNRNGTPIASLWLSSLTVQFCLLLVWLLGKGYTNLL
HHHHCCCCCHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
LISTSMILVPYLLIGLFLLKLSLSGQGNGLMRIVALVASGYGLWLLYAAGVEYLLLSLLL
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
YGPGLLLFLYSRRQVVDGKKLNGRERLLAGATLLSLFPALWSFCYQ
HCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]