Click here to switch to the map view.

The map label for this gene is yeeY [H]

Identifier: 126175198

GI number: 126175198

Start: 3524695

End: 3525588

Strand: Reverse

Name: yeeY [H]

Synonym: Sbal_2996

Alternate gene names: 126175198

Gene position: 3525588-3524695 (Counterclockwise)

Preceding gene: 126175201

Following gene: 126175195

Centisome position: 68.76

GC content: 51.57

Gene sequence:

>894_bases
ATGTTGCCATCTATTAGTCTCGATGGATTAATCGTACTCGATGCCATTGATAGAAAAGGCAGTTTTTCCGCAGCGGCCGA
GTCCTTGTTCCGAGTGCCGTCGGCGCTGACCTACACAGTGCAGAAACTGGAAAGCGATTTAGGCACAAAATTATTTGAAC
GTAAGGGCCAGCGCGCCGAACTGACCTTAGTCGGTCAACTTGTGCTGCGCCAAGGTCGAGAAATCCTTTCGGCAACGTCT
AGGCTGGAAGAAGCGGTGCGTCAACTCGAGACTGGCTGGGAGTCTTCGTTAACCTTAGCGATTGATACCGTCGTGCCGGA
TTTACCCCTATTGCAGTTGATCGGGGAATTTACTGAGCTGGGTAAGCAAGTGACGGTGAATATCAGTGAAGAGTCCTTAG
GTGGCGGCTGGGATGCACTCTATTCGGGCCGTGCCGATATTGCCATCGGCGTAACGGGTGAACTGCCAAAAGGTCAATAT
CATGTGATCGAAATCAGTGAGTTGGTGTTTGTGTTTGCCTTAAATCCTGCCCACCCATTGGCGCAGCATGCGGGTCCTAT
TCCGACCGAGGCATTGCTGCAATTCCCTTCCATTGTGGTGGCTGACAGTTCGACTGCCTTAGCGCAGCGCTCGAGCGGTT
TATTTGATAGTCGCCAAGTGATCCGGGTGCCAAATATGCAAACCAAGATTAAGGCTCAGCAATTGGGACTCGGCGTAGGC
TACATTCCAAAACACTTGATTTTAGATGCGTTGGCGACGGGGAGCTTAGTGGCTTGTAATGTGGAAATGCCGCGCCCACC
CCAAGCTGTGTTTATGGCGTGGCGTAAAGACGCGCAGGGCAAGGCAAAGGATTGGTTTACTGAGCGCTTGCCACAATGCG
ACTGGCAATTTTAA

Upstream 100 bases:

>100_bases
CAGAACCTCTCCATTGCTAAGCAGTGTAGACTTGACCTTTGGCAAAGAAAATCGGAACATTTTCAATGTCGACTTCAAAT
AATTTGAATATGAGGTTTTT

Downstream 100 bases:

>100_bases
GAGCCTAGCAATTTTATAATTCTAGCAATTTTGATGACAGGCAAGACAGGCAATGAGAGGAACGTTTGTTTTGCATCACT
GTCTATTCAACGCTTTGTAA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MLPSISLDGLIVLDAIDRKGSFSAAAESLFRVPSALTYTVQKLESDLGTKLFERKGQRAELTLVGQLVLRQGREILSATS
RLEEAVRQLETGWESSLTLAIDTVVPDLPLLQLIGEFTELGKQVTVNISEESLGGGWDALYSGRADIAIGVTGELPKGQY
HVIEISELVFVFALNPAHPLAQHAGPIPTEALLQFPSIVVADSSTALAQRSSGLFDSRQVIRVPNMQTKIKAQQLGLGVG
YIPKHLILDALATGSLVACNVEMPRPPQAVFMAWRKDAQGKAKDWFTERLPQCDWQF

Sequences:

>Translated_297_residues
MLPSISLDGLIVLDAIDRKGSFSAAAESLFRVPSALTYTVQKLESDLGTKLFERKGQRAELTLVGQLVLRQGREILSATS
RLEEAVRQLETGWESSLTLAIDTVVPDLPLLQLIGEFTELGKQVTVNISEESLGGGWDALYSGRADIAIGVTGELPKGQY
HVIEISELVFVFALNPAHPLAQHAGPIPTEALLQFPSIVVADSSTALAQRSSGLFDSRQVIRVPNMQTKIKAQQLGLGVG
YIPKHLILDALATGSLVACNVEMPRPPQAVFMAWRKDAQGKAKDWFTERLPQCDWQF
>Mature_297_residues
MLPSISLDGLIVLDAIDRKGSFSAAAESLFRVPSALTYTVQKLESDLGTKLFERKGQRAELTLVGQLVLRQGREILSATS
RLEEAVRQLETGWESSLTLAIDTVVPDLPLLQLIGEFTELGKQVTVNISEESLGGGWDALYSGRADIAIGVTGELPKGQY
HVIEISELVFVFALNPAHPLAQHAGPIPTEALLQFPSIVVADSSTALAQRSSGLFDSRQVIRVPNMQTKIKAQQLGLGVG
YIPKHLILDALATGSLVACNVEMPRPPQAVFMAWRKDAQGKAKDWFTERLPQCDWQF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082024, Length=285, Percent_Identity=36.8421052631579, Blast_Score=195, Evalue=3e-51,
Organism=Escherichia coli, GI1787949, Length=282, Percent_Identity=34.7517730496454, Blast_Score=178, Evalue=3e-46,
Organism=Escherichia coli, GI1789492, Length=290, Percent_Identity=34.1379310344828, Blast_Score=168, Evalue=5e-43,
Organism=Escherichia coli, GI1786713, Length=284, Percent_Identity=30.6338028169014, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1786508, Length=291, Percent_Identity=28.5223367697594, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI145693105, Length=168, Percent_Identity=29.7619047619048, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI87081904, Length=268, Percent_Identity=29.1044776119403, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32358; Mature: 32358

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPSISLDGLIVLDAIDRKGSFSAAAESLFRVPSALTYTVQKLESDLGTKLFERKGQRAE
CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCH
LTLVGQLVLRQGREILSATSRLEEAVRQLETGWESSLTLAIDTVVPDLPLLQLIGEFTEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHC
GKQVTVNISEESLGGGWDALYSGRADIAIGVTGELPKGQYHVIEISELVFVFALNPAHPL
CCEEEEEECHHCCCCCHHHHHCCCCCEEEEECCCCCCCCEEEEEHHHEEEEEEECCCCHH
AQHAGPIPTEALLQFPSIVVADSSTALAQRSSGLFDSRQVIRVPNMQTKIKAQQLGLGVG
HHHCCCCCHHHHHHCCCEEEECCCHHHHHHCCCCCCCCCEEECCCCHHHHHHHHHCCCCC
YIPKHLILDALATGSLVACNVEMPRPPQAVFMAWRKDAQGKAKDWFTERLPQCDWQF
HHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLPSISLDGLIVLDAIDRKGSFSAAAESLFRVPSALTYTVQKLESDLGTKLFERKGQRAE
CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCH
LTLVGQLVLRQGREILSATSRLEEAVRQLETGWESSLTLAIDTVVPDLPLLQLIGEFTEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHC
GKQVTVNISEESLGGGWDALYSGRADIAIGVTGELPKGQYHVIEISELVFVFALNPAHPL
CCEEEEEECHHCCCCCHHHHHCCCCCEEEEECCCCCCCCEEEEEHHHEEEEEEECCCCHH
AQHAGPIPTEALLQFPSIVVADSSTALAQRSSGLFDSRQVIRVPNMQTKIKAQQLGLGVG
HHHCCCCCHHHHHHCCCEEEECCCHHHHHHCCCCCCCCCEEECCCCHHHHHHHHHCCCCC
YIPKHLILDALATGSLVACNVEMPRPPQAVFMAWRKDAQGKAKDWFTERLPQCDWQF
HHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]