Click here to switch to the map view.

The map label for this gene is yfbE [C]

Identifier: 126175168

GI number: 126175168

Start: 3480942

End: 3482090

Strand: Reverse

Name: yfbE [C]

Synonym: Sbal_2966

Alternate gene names: 126175168

Gene position: 3482090-3480942 (Counterclockwise)

Preceding gene: 126175169

Following gene: 126175165

Centisome position: 67.91

GC content: 42.12

Gene sequence:

>1149_bases
ATGATTCCATATGGTAAGCAAGATATTAATCAGGATGATATCGATGCTGTGCTTGCGGTATTGAAATCAGACTATTTGAC
GCAAGGTCCAGTAGTTCCTGTGTTCGAACAGGCTGTGGCACTGGCAGTTGGTGCAAAATTTTCAGTAGCAGTAAATAGTG
CGACCTCTGCATTGCATATAGCTTGTCTTGCATTAGGTGTAGAAAAGGGCGATTTAGTCTGGACATCTCCGATTACGTTT
GTCGCATCAGCAAATAGTGCGCTTTATTGTGGTGCGGAAGTCGACTTTGTTGATGTGGATCCTTATACCGGTAATATGTG
CCCTAAGGCTCTGGCAACAAAACTGCTTCTTGCTGCAAAGGTAGGAATTTTACCAAAGGTAGTTATTCCTGTGCATCTAT
GCGGTCACAGTTGCGATATGCAGGCCATTTCAGCACTCGCCGATGAATACGGATTTAAGATCATTGAGGATGCTTCACAT
GGAATAGGTGGTAGCTATCAGGGCCATAAACTTGGCAGCTGCGAATATTCAGACATTACAGTTTTTAGTTTCCATCCGGT
GAAGATTATTACCAGCGCTGAAGGCGGCATGGCAATGACTAACTGCGCAGAGTTGGCAGCGAAAATGGTTCTCTATCGGA
GTCATGGAATAACCAAAGTACCTGAAACGATGCTTAGGCCTGATGAAGGGGACTGGTATTACGAGCAGCATTTACTTGGG
TTTAATTATAGAATGACGGATTTACATGCTGCTCTGGGACTATCACAAATGAGTCGTCTAGATAATTTTGTGACTAAACG
AAATCAATTGGCTGATATCTATGAGCAAGAACTAGCAGGTTTACGACTGAATGTTGTTGACCCTATACCAGATTCTATCA
GCGCTAGACATCTCTATATGATACGGCTGCAACATGCAGATCAACGCCGCATAGTTTTCGATACAATGCGTCGTAATGAT
ATTCAAGTGCATGTGCATTATTTTCCTGTGCATTTACAGCCATATTATATTGCTCTTGGTTTTAAAGTTGGCGACTTTCC
TAATGCTGAACGTTTTTATGAAGAAATTCTCACACTTCCTTTATATCCGACATTGGACCGGTCTGAGTTGCAATATATCG
TAGCTACGCTTTTTACTTGCATAAGTTAA

Upstream 100 bases:

>100_bases
GTGAAAAAGGACATCTTGTCCCACAAGGGTTTGAATATAACTCAGGTACAAACCCAAAGTTTCTCACCATTGATGAAATC
TTAGCAATGGACAAACTTGC

Downstream 100 bases:

>100_bases
TCTATGCTAGCCAAGTACCATTTCGGCAGCCTCTGGCTAGCGAGTAGCATCTATTTACTTAAACTTTTGATGGTTCTAGA
CACTTTGTTCCAATAGCCGT

Product: DegT/DnrJ/EryC1/StrS aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 382

Protein sequence:

>382_residues
MIPYGKQDINQDDIDAVLAVLKSDYLTQGPVVPVFEQAVALAVGAKFSVAVNSATSALHIACLALGVEKGDLVWTSPITF
VASANSALYCGAEVDFVDVDPYTGNMCPKALATKLLLAAKVGILPKVVIPVHLCGHSCDMQAISALADEYGFKIIEDASH
GIGGSYQGHKLGSCEYSDITVFSFHPVKIITSAEGGMAMTNCAELAAKMVLYRSHGITKVPETMLRPDEGDWYYEQHLLG
FNYRMTDLHAALGLSQMSRLDNFVTKRNQLADIYEQELAGLRLNVVDPIPDSISARHLYMIRLQHADQRRIVFDTMRRND
IQVHVHYFPVHLQPYYIALGFKVGDFPNAERFYEEILTLPLYPTLDRSELQYIVATLFTCIS

Sequences:

>Translated_382_residues
MIPYGKQDINQDDIDAVLAVLKSDYLTQGPVVPVFEQAVALAVGAKFSVAVNSATSALHIACLALGVEKGDLVWTSPITF
VASANSALYCGAEVDFVDVDPYTGNMCPKALATKLLLAAKVGILPKVVIPVHLCGHSCDMQAISALADEYGFKIIEDASH
GIGGSYQGHKLGSCEYSDITVFSFHPVKIITSAEGGMAMTNCAELAAKMVLYRSHGITKVPETMLRPDEGDWYYEQHLLG
FNYRMTDLHAALGLSQMSRLDNFVTKRNQLADIYEQELAGLRLNVVDPIPDSISARHLYMIRLQHADQRRIVFDTMRRND
IQVHVHYFPVHLQPYYIALGFKVGDFPNAERFYEEILTLPLYPTLDRSELQYIVATLFTCIS
>Mature_382_residues
MIPYGKQDINQDDIDAVLAVLKSDYLTQGPVVPVFEQAVALAVGAKFSVAVNSATSALHIACLALGVEKGDLVWTSPITF
VASANSALYCGAEVDFVDVDPYTGNMCPKALATKLLLAAKVGILPKVVIPVHLCGHSCDMQAISALADEYGFKIIEDASH
GIGGSYQGHKLGSCEYSDITVFSFHPVKIITSAEGGMAMTNCAELAAKMVLYRSHGITKVPETMLRPDEGDWYYEQHLLG
FNYRMTDLHAALGLSQMSRLDNFVTKRNQLADIYEQELAGLRLNVVDPIPDSISARHLYMIRLQHADQRRIVFDTMRRND
IQVHVHYFPVHLQPYYIALGFKVGDFPNAERFYEEILTLPLYPTLDRSELQYIVATLFTCIS

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=386, Percent_Identity=31.6062176165803, Blast_Score=183, Evalue=1e-47,
Organism=Escherichia coli, GI2367285, Length=393, Percent_Identity=28.7531806615776, Blast_Score=145, Evalue=4e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 42256; Mature: 42256

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPYGKQDINQDDIDAVLAVLKSDYLTQGPVVPVFEQAVALAVGAKFSVAVNSATSALHI
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCHHHHHH
ACLALGVEKGDLVWTSPITFVASANSALYCGAEVDFVDVDPYTGNMCPKALATKLLLAAK
HHHHHCCCCCCEEEECCEEEEEECCCEEEECCEEEEEECCCCCCCCCHHHHHHHHHHHHH
VGILPKVVIPVHLCGHSCDMQAISALADEYGFKIIEDASHGIGGSYQGHKLGSCEYSDIT
HCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCEE
VFSFHPVKIITSAEGGMAMTNCAELAAKMVLYRSHGITKVPETMLRPDEGDWYYEQHLLG
EEEECCEEEEEECCCCEEHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCEEEEHEEEC
FNYRMTDLHAALGLSQMSRLDNFVTKRNQLADIYEQELAGLRLNVVDPIPDSISARHLYM
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEE
IRLQHADQRRIVFDTMRRNDIQVHVHYFPVHLQPYYIALGFKVGDFPNAERFYEEILTLP
EEEECCCCCEEEEHHCCCCCEEEEEEEEEEEECEEEEEEEEEECCCCCHHHHHHHHHHCC
LYPTLDRSELQYIVATLFTCIS
CCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIPYGKQDINQDDIDAVLAVLKSDYLTQGPVVPVFEQAVALAVGAKFSVAVNSATSALHI
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCHHHHHH
ACLALGVEKGDLVWTSPITFVASANSALYCGAEVDFVDVDPYTGNMCPKALATKLLLAAK
HHHHHCCCCCCEEEECCEEEEEECCCEEEECCEEEEEECCCCCCCCCHHHHHHHHHHHHH
VGILPKVVIPVHLCGHSCDMQAISALADEYGFKIIEDASHGIGGSYQGHKLGSCEYSDIT
HCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCEE
VFSFHPVKIITSAEGGMAMTNCAELAAKMVLYRSHGITKVPETMLRPDEGDWYYEQHLLG
EEEECCEEEEEECCCCEEHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCEEEEHEEEC
FNYRMTDLHAALGLSQMSRLDNFVTKRNQLADIYEQELAGLRLNVVDPIPDSISARHLYM
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEE
IRLQHADQRRIVFDTMRRNDIQVHVHYFPVHLQPYYIALGFKVGDFPNAERFYEEILTLP
EEEECCCCCEEEEHHCCCCCEEEEEEEEEEEECEEEEEEEEEECCCCCHHHHHHHHHHCC
LYPTLDRSELQYIVATLFTCIS
CCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]