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The map label for this gene is lafA [H]

Identifier: 126175137

GI number: 126175137

Start: 3449048

End: 3449872

Strand: Reverse

Name: lafA [H]

Synonym: Sbal_2935

Alternate gene names: 126175137

Gene position: 3449872-3449048 (Counterclockwise)

Preceding gene: 126175138

Following gene: 126175136

Centisome position: 67.28

GC content: 41.45

Gene sequence:

>825_bases
ATGGCCATTACAGTAAACACTAACGTCACATCTTTAAAAGCACAGAAAAATTTAAACTCATCTGCCACTGGATTAGCTTC
CTCAATGGAACGTTTATCAAGTGGTTTACGTATCAACAGTGCCAAAGATGATGCTGCAGGTCTAGCAATTTCTAACCGTC
TAAACAGCCAAGTTCGTGGTTTAGATGTAGGTATGCGCAACGCTAACGATGCAATCTCAATCGCCCAGATTTCTGAAGGC
GCGATGCAAGAACAAACTAACATGTTGCAACGTATGCGTGATTTAACTATTCAGGCAGAAAATGGTTCAAACTCTACCTC
TGATATCGGCGCGATTAAATCAGAGCTTGATGCGCTCGCAACTGAAATCACTGCAATTGCTAATACTACTGCATTTGGTA
ATACTAAATTGTTAGATGGTAGTTTTTCTGCGGGGAAAACCTTCCAAGTCGGTCACCAAAATGGTGAAGACATTAAAGTC
TCTGTGGGTAAAGTAACTGCCAGTGCGATTAAAGTAAATGCTTCAGTAATTCTAGTATCGACAGCGGGCCAAAGAAGTAC
ATCATTATCAAATATTGATGCGGCAATAAAAACAATCGATAGCCAAAGAGCAAAATTGGGTGCGATACAAAACCGCTTAG
CCTACAACATTAGTAACAGTGCTAACACTCAGGCTAACGTTGCCGATGCGAAGAGCCGTATCGTTGATGTTGACTTTGCG
AAAGAAACATCGCAAATGACCAAGAATCAAGTGTTACAACAAACGGGTTCTGCAATGTTGGCCCAAGCTAACCAATTACC
TCAAGTGGCCCTATCACTACTGTAA

Upstream 100 bases:

>100_bases
TAAAAAATATACTGCCGTTAAATATACTGTAACCACTAAGACCCGCCTGGCTTAAGTAGACAGGCAAGTTAATAAGCCAG
GTATAAAGAGGAAACGAATC

Downstream 100 bases:

>100_bases
TATAAAGTAGTAAAGTCGAAAAGTGATAAGGGAGGTTCGGCGACGGATCTCCCTTTGCCACATTAAAAGGTTAATTAAGC
TTTATAGTGTAATTTTTTGT

Product: flagellin domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 273

Protein sequence:

>274_residues
MAITVNTNVTSLKAQKNLNSSATGLASSMERLSSGLRINSAKDDAAGLAISNRLNSQVRGLDVGMRNANDAISIAQISEG
AMQEQTNMLQRMRDLTIQAENGSNSTSDIGAIKSELDALATEITAIANTTAFGNTKLLDGSFSAGKTFQVGHQNGEDIKV
SVGKVTASAIKVNASVILVSTAGQRSTSLSNIDAAIKTIDSQRAKLGAIQNRLAYNISNSANTQANVADAKSRIVDVDFA
KETSQMTKNQVLQQTGSAMLAQANQLPQVALSLL

Sequences:

>Translated_274_residues
MAITVNTNVTSLKAQKNLNSSATGLASSMERLSSGLRINSAKDDAAGLAISNRLNSQVRGLDVGMRNANDAISIAQISEG
AMQEQTNMLQRMRDLTIQAENGSNSTSDIGAIKSELDALATEITAIANTTAFGNTKLLDGSFSAGKTFQVGHQNGEDIKV
SVGKVTASAIKVNASVILVSTAGQRSTSLSNIDAAIKTIDSQRAKLGAIQNRLAYNISNSANTQANVADAKSRIVDVDFA
KETSQMTKNQVLQQTGSAMLAQANQLPQVALSLL
>Mature_273_residues
AITVNTNVTSLKAQKNLNSSATGLASSMERLSSGLRINSAKDDAAGLAISNRLNSQVRGLDVGMRNANDAISIAQISEGA
MQEQTNMLQRMRDLTIQAENGSNSTSDIGAIKSELDALATEITAIANTTAFGNTKLLDGSFSAGKTFQVGHQNGEDIKVS
VGKVTASAIKVNASVILVSTAGQRSTSLSNIDAAIKTIDSQRAKLGAIQNRLAYNISNSANTQANVADAKSRIVDVDFAK
ETSQMTKNQVLQQTGSAMLAQANQLPQVALSLL

Specific function: Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. Essential for lateral flagellar synthesis and swarming motility [H]

COG id: COG1344

COG function: function code N; Flagellin and related hook-associated proteins

Gene ontology:

Cell location: Secreted. Bacterial flagellum [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial flagellin family [H]

Homologues:

Organism=Escherichia coli, GI1788232, Length=176, Percent_Identity=44.8863636363636, Blast_Score=137, Evalue=6e-34,

Paralogues:

None

Copy number: 200,000-400,000 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001492
- InterPro:   IPR001029 [H]

Pfam domain/function: PF00700 Flagellin_C; PF00669 Flagellin_N [H]

EC number: NA

Molecular weight: Translated: 28658; Mature: 28526

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAITVNTNVTSLKAQKNLNSSATGLASSMERLSSGLRINSAKDDAAGLAISNRLNSQVRG
CEEEEECCCEEEEHHHCCCCHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHC
LDVGMRNANDAISIAQISEGAMQEQTNMLQRMRDLTIQAENGSNSTSDIGAIKSELDALA
CCCCCCCCCCCEEEEHHHCHHHHHHHHHHHHHHHCEEEECCCCCCCHHHHHHHHHHHHHH
TEITAIANTTAFGNTKLLDGSFSAGKTFQVGHQNGEDIKVSVGKVTASAIKVNASVILVS
HHHHHHHCCCCCCCCEEECCCCCCCCEEEECCCCCCEEEEEECEEEEEEEEEEEEEEEEE
TAGQRSTSLSNIDAAIKTIDSQRAKLGAIQNRLAYNISNSANTQANVADAKSRIVDVDFA
ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHEEEEEHH
KETSQMTKNQVLQQTGSAMLAQANQLPQVALSLL
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCC
>Mature Secondary Structure 
AITVNTNVTSLKAQKNLNSSATGLASSMERLSSGLRINSAKDDAAGLAISNRLNSQVRG
EEEEECCCEEEEHHHCCCCHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHC
LDVGMRNANDAISIAQISEGAMQEQTNMLQRMRDLTIQAENGSNSTSDIGAIKSELDALA
CCCCCCCCCCCEEEEHHHCHHHHHHHHHHHHHHHCEEEECCCCCCCHHHHHHHHHHHHHH
TEITAIANTTAFGNTKLLDGSFSAGKTFQVGHQNGEDIKVSVGKVTASAIKVNASVILVS
HHHHHHHCCCCCCCCEEECCCCCCCCEEEECCCCCCEEEEEECEEEEEEEEEEEEEEEEE
TAGQRSTSLSNIDAAIKTIDSQRAKLGAIQNRLAYNISNSANTQANVADAKSRIVDVDFA
ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHEEEEEHH
KETSQMTKNQVLQQTGSAMLAQANQLPQVALSLL
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8501040; 12620739 [H]