| Definition | Shewanella baltica OS155 chromosome, complete genome. |
|---|---|
| Accession | NC_009052 |
| Length | 5,127,376 |
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The map label for this gene is glnD [H]
Identifier: 126173686
GI number: 126173686
Start: 1679184
End: 1681769
Strand: Reverse
Name: glnD [H]
Synonym: Sbal_1448
Alternate gene names: 126173686
Gene position: 1681769-1679184 (Counterclockwise)
Preceding gene: 126173687
Following gene: 126173685
Centisome position: 32.8
GC content: 48.99
Gene sequence:
>2586_bases ATGAATATAGCTCTGCTCGCTAAACAATCATTAATCGAACAGAATCAGACTCTTTTAGCCAGTTTCAAGGCTAAAACCCC GATTGAAGAGCTAGTCACGCAGCGCTGTCAATTTGTCGATGCCCTTGTAAAGCAAGCTTGGGAACAGCACGGTCTAAGGG AATTTGATATTTCCCTGATTGCCGTAGGCGGCTATGGCCGTGGGGAGCTGCATCCCCACTCAGATGTCGACTTGCTGTTC CTATTTAATGATATCTTGTCACCCGCCGCCGAAGCGGCACTCAGTCAGTTTATTGCCTTTCTGTGGGATGCTAATCTCGA AATCGGCCACAGTGTCCGTACGTTAAACGACACTATTACTCTCGGCCGTGAAGACATCACCATAGCCACTAACCTGTTAG AGGCACGACTGCTCGAAGGGCCCGAGTTTTTATTCGACCAACTTTACGATGCCATTCGTCAGAGTGACTTTTGGACCTCA AGCGACTTCTTTATCGCTAAGCGTGACGAACAAAATGCCCGCCATGCCAGAGCCAGTGCCTTCGATTTAGAACCCAATAT CAAGAGTTGTCCCGGCGGCCTTAGGGATATTCAAACCATTGCTTGGGTGGCCATGCGTCACTTTGGCGCCGCTCGCCTCG AAGAATTAGTCCAATACGACTTTTTAGAGACCGGTGAATTAGAAGAGCTGCTCGAATGTCAGCACTTTTTATGGAAGCTA CGCTTTGCCCTGCACATGGTGGTCGGTCGCGATGAAAATCGCTTACTGTTTGATGTGCAGCGCCAAGTTGCCGAACTTAT GGGTTATGAAGACGCCACCCAGCTTGCCGTTGAGCAGATGATGAAGCGCTACTATCGCACGGTGCGCCGAGTGATGGAGC TGAATGAAATGCTGTTGCAGCTCTTTAAGCGCGCAACGCTGGGGCACACAAAAGCCTTAGAAATTCAATCGATAGACAAA CACTACCAGCGCCGCGGTACCTTTATCGAAGCGCTCAGTGATGATCTGTTCGATAGCGGCGAAGAAATTGTGCGGCTGTT TTTGTTAGTCGCTAAAAACTCCAATATTAAAGGTATTTACGCGCCAACGCTGCGTTCACTGCGTCGTGCAAGACGTGCCC AGCCGCAAGCCTTGCAAGAAAACCCGCTTTGCCGCCAAGCCTTTATGGAAATTTTGCGCCATCCTCGCGGCATTGTTGCC TTGTCTTTAATGCACAAACACGGCGTGTTATCGGCCTATTTACCGGCATGGCGAAATATTGAAGGTCAGATGCAGTTTGA CCTGTTCCACGCCTACACAGTCGATGAACATACCCACAGATTACTGCTCAATATTGAGCGTTTTTCTCAAGCCGAACAAA AAGAAGAATTTCCCTTAGGCTCGATTCTCATCAACCAACTGCCGAAAAAGGGCTTACTGGTATTAGGCGCGATCTTCCAC GATATCGCCAAAGGCCGCGGTGGCGATCACAGTAAACTTGGCGGCGCCGACGCCCTCGCCTTTTGTAAGCTACACGGGTT AAACGATCACGATGGTCGTCTAGTCGCTTGGCTGGTCGAGAATCATCTGGTGATGTCTGTCACCGCCCAGCGCCGAGATA TTTCCGATCCCGATGTGGTGGCCGATTTTGCCAATAAAGTCCGCGATGCCGTGCATTTAAGCTATCTGTACTGCTTAACC GTCGCCGATATCTGCGCCACCAACGAAAAAACGTGGAACAACTGGAAAGGCTCACTGCTGCGCGACTTGTACTTTTCGAC CCAAAGGGTGCTCGCACGTGGTAAAGAAAAACCCGTCGACATTCGTGCCAGAGTACGTGAATACCAAGCTAAGGCGAAAA AAGAACTGCTGCGCCGTGGACTGAAAGAGAAAGATCTCGATACCCTGTGGCAACGTTTTAAGGCAGATTACTTTTTACGC CACCAGCCCAATCAAGTCGCGTGGCACGCCGAAGCGATTTTAAAGCATAAACAACAGGATGAGCCCTTAGTCTTAGTGTC CAAACACACGACTCGTGGTGGCACTGAGCTTTTTGTCTATTGCCAAGACAGACCTAAATTATTCGCAACTGTGATGGCGG TACTCGACAATAAAAATATCAACGTCCATGATGCCAACATCATGACGTCAAAAGATAATTATGCCCTCGATACCTTTGTG ATCTTAGAGCAAGATGGCGCGCCCGTTAGCCAGCTGTCACGCATTCAAAGTATCCGTAAGGCGCTTGAAAAAGCCCTGTC GAGCGACAGTCCAAAACTGCCACGCTTTAGAAAACTGTCGCGCAAGATGAAACCTTTTAATGTTCCGACACAAGTGAGTT TCCTCGAAAGCAGTCGTCATGGTACAAGTATGATGGAGCTTATCGCCTTAGATTCGCCTGGATTACTGGCAAAAGTCGGG GATATCTTTTACCGTTGCAACACGACGTTACTCGCGGCCAAGATCACCACCATTGGTGAGCGAGCCGAAGACTTTTTTAT GCTGCAAACCAACGATGGCCTGCAGCTTAACGAAACCCAAGAGAATACCCTCAGGGACGCTTTAATCAGAGCCTTGAGTG CAAAGAATATCGAATCAGTTAATTAA
Upstream 100 bases:
>100_bases AGGGGTTGAAGTACTGACCCTACGTGAGGATGAAGATTTTCCACGCATCATCAATCACGATCGATAGGCCAAACCAACAA AAATAAAAACAAGGGACTCG
Downstream 100 bases:
>100_bases CGAGACCAGTGGGAGAAGTAAATGGAGGCTTTACGCCAACGTATTGAGGCGGCTTTTGAAGCTCGCGCCGACATCACGCC AAGCACAGTTGACGCCAGCG
Product: PII uridylyl-transferase
Products: NA
Alternate protein names: PII uridylyl-transferase; UTase; Uridylyl-removing enzyme [H]
Number of amino acids: Translated: 861; Mature: 861
Protein sequence:
>861_residues MNIALLAKQSLIEQNQTLLASFKAKTPIEELVTQRCQFVDALVKQAWEQHGLREFDISLIAVGGYGRGELHPHSDVDLLF LFNDILSPAAEAALSQFIAFLWDANLEIGHSVRTLNDTITLGREDITIATNLLEARLLEGPEFLFDQLYDAIRQSDFWTS SDFFIAKRDEQNARHARASAFDLEPNIKSCPGGLRDIQTIAWVAMRHFGAARLEELVQYDFLETGELEELLECQHFLWKL RFALHMVVGRDENRLLFDVQRQVAELMGYEDATQLAVEQMMKRYYRTVRRVMELNEMLLQLFKRATLGHTKALEIQSIDK HYQRRGTFIEALSDDLFDSGEEIVRLFLLVAKNSNIKGIYAPTLRSLRRARRAQPQALQENPLCRQAFMEILRHPRGIVA LSLMHKHGVLSAYLPAWRNIEGQMQFDLFHAYTVDEHTHRLLLNIERFSQAEQKEEFPLGSILINQLPKKGLLVLGAIFH DIAKGRGGDHSKLGGADALAFCKLHGLNDHDGRLVAWLVENHLVMSVTAQRRDISDPDVVADFANKVRDAVHLSYLYCLT VADICATNEKTWNNWKGSLLRDLYFSTQRVLARGKEKPVDIRARVREYQAKAKKELLRRGLKEKDLDTLWQRFKADYFLR HQPNQVAWHAEAILKHKQQDEPLVLVSKHTTRGGTELFVYCQDRPKLFATVMAVLDNKNINVHDANIMTSKDNYALDTFV ILEQDGAPVSQLSRIQSIRKALEKALSSDSPKLPRFRKLSRKMKPFNVPTQVSFLESSRHGTSMMELIALDSPGLLAKVG DIFYRCNTTLLAAKITTIGERAEDFFMLQTNDGLQLNETQENTLRDALIRALSAKNIESVN
Sequences:
>Translated_861_residues MNIALLAKQSLIEQNQTLLASFKAKTPIEELVTQRCQFVDALVKQAWEQHGLREFDISLIAVGGYGRGELHPHSDVDLLF LFNDILSPAAEAALSQFIAFLWDANLEIGHSVRTLNDTITLGREDITIATNLLEARLLEGPEFLFDQLYDAIRQSDFWTS SDFFIAKRDEQNARHARASAFDLEPNIKSCPGGLRDIQTIAWVAMRHFGAARLEELVQYDFLETGELEELLECQHFLWKL RFALHMVVGRDENRLLFDVQRQVAELMGYEDATQLAVEQMMKRYYRTVRRVMELNEMLLQLFKRATLGHTKALEIQSIDK HYQRRGTFIEALSDDLFDSGEEIVRLFLLVAKNSNIKGIYAPTLRSLRRARRAQPQALQENPLCRQAFMEILRHPRGIVA LSLMHKHGVLSAYLPAWRNIEGQMQFDLFHAYTVDEHTHRLLLNIERFSQAEQKEEFPLGSILINQLPKKGLLVLGAIFH DIAKGRGGDHSKLGGADALAFCKLHGLNDHDGRLVAWLVENHLVMSVTAQRRDISDPDVVADFANKVRDAVHLSYLYCLT VADICATNEKTWNNWKGSLLRDLYFSTQRVLARGKEKPVDIRARVREYQAKAKKELLRRGLKEKDLDTLWQRFKADYFLR HQPNQVAWHAEAILKHKQQDEPLVLVSKHTTRGGTELFVYCQDRPKLFATVMAVLDNKNINVHDANIMTSKDNYALDTFV ILEQDGAPVSQLSRIQSIRKALEKALSSDSPKLPRFRKLSRKMKPFNVPTQVSFLESSRHGTSMMELIALDSPGLLAKVG DIFYRCNTTLLAAKITTIGERAEDFFMLQTNDGLQLNETQENTLRDALIRALSAKNIESVN >Mature_861_residues MNIALLAKQSLIEQNQTLLASFKAKTPIEELVTQRCQFVDALVKQAWEQHGLREFDISLIAVGGYGRGELHPHSDVDLLF LFNDILSPAAEAALSQFIAFLWDANLEIGHSVRTLNDTITLGREDITIATNLLEARLLEGPEFLFDQLYDAIRQSDFWTS SDFFIAKRDEQNARHARASAFDLEPNIKSCPGGLRDIQTIAWVAMRHFGAARLEELVQYDFLETGELEELLECQHFLWKL RFALHMVVGRDENRLLFDVQRQVAELMGYEDATQLAVEQMMKRYYRTVRRVMELNEMLLQLFKRATLGHTKALEIQSIDK HYQRRGTFIEALSDDLFDSGEEIVRLFLLVAKNSNIKGIYAPTLRSLRRARRAQPQALQENPLCRQAFMEILRHPRGIVA LSLMHKHGVLSAYLPAWRNIEGQMQFDLFHAYTVDEHTHRLLLNIERFSQAEQKEEFPLGSILINQLPKKGLLVLGAIFH DIAKGRGGDHSKLGGADALAFCKLHGLNDHDGRLVAWLVENHLVMSVTAQRRDISDPDVVADFANKVRDAVHLSYLYCLT VADICATNEKTWNNWKGSLLRDLYFSTQRVLARGKEKPVDIRARVREYQAKAKKELLRRGLKEKDLDTLWQRFKADYFLR HQPNQVAWHAEAILKHKQQDEPLVLVSKHTTRGGTELFVYCQDRPKLFATVMAVLDNKNINVHDANIMTSKDNYALDTFV ILEQDGAPVSQLSRIQSIRKALEKALSSDSPKLPRFRKLSRKMKPFNVPTQVSFLESSRHGTSMMELIALDSPGLLAKVG DIFYRCNTTLLAAKITTIGERAEDFFMLQTNDGLQLNETQENTLRDALIRALSAKNIESVN
Specific function: Modifies, by uridylylation or deuridylylation the PII (glnB) regulatory protein [H]
COG id: COG2844
COG function: function code O; UTP:GlnB (protein PII) uridylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glnD family [H]
Homologues:
Organism=Escherichia coli, GI1786363, Length=841, Percent_Identity=49.2271105826397, Blast_Score=801, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR010043 - InterPro: IPR003607 - InterPro: IPR002934 - InterPro: IPR013546 [H]
Pfam domain/function: PF01842 ACT; PF08335 GlnD_UR_UTase; PF01909 NTP_transf_2 [H]
EC number: =2.7.7.59 [H]
Molecular weight: Translated: 98352; Mature: 98352
Theoretical pI: Translated: 7.45; Mature: 7.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIALLAKQSLIEQNQTLLASFKAKTPIEELVTQRCQFVDALVKQAWEQHGLREFDISLI CCEEHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECEEEE AVGGYGRGELHPHSDVDLLFLFNDILSPAAEAALSQFIAFLWDANLEIGHSVRTLNDTIT EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHE LGREDITIATNLLEARLLEGPEFLFDQLYDAIRQSDFWTSSDFFIAKRDEQNARHARASA ECCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHCCC FDLEPNIKSCPGGLRDIQTIAWVAMRHFGAARLEELVQYDFLETGELEELLECQHFLWKL CCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH RFALHMVVGRDENRLLFDVQRQVAELMGYEDATQLAVEQMMKRYYRTVRRVMELNEMLLQ HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFKRATLGHTKALEIQSIDKHYQRRGTFIEALSDDLFDSGEEIVRLFLLVAKNSNIKGIY HHHHHHCCCCCEEHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEE APTLRSLRRARRAQPQALQENPLCRQAFMEILRHPRGIVALSLMHKHGVLSAYLPAWRNI HHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHCCCCCEEHHHHHHCCCHHHHHHHHCCC EGQMQFDLFHAYTVDEHTHRLLLNIERFSQAEQKEEFPLGSILINQLPKKGLLVLGAIFH CCCEEEEEEEEEECCCHHHHHHEEHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHH DIAKGRGGDHSKLGGADALAFCKLHGLNDHDGRLVAWLVENHLVMSVTAQRRDISDPDVV HHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEHHHCCCCCHHHH ADFANKVRDAVHLSYLYCLTVADICATNEKTWNNWKGSLLRDLYFSTQRVLARGKEKPVD HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCH IRARVREYQAKAKKELLRRGLKEKDLDTLWQRFKADYFLRHQPNQVAWHAEAILKHKQQD HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHEECCCCCHHHHHHHHHHHCCCC EPLVLVSKHTTRGGTELFVYCQDRPKLFATVMAVLDNKNINVHDANIMTSKDNYALDTFV CCEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCEEECCEEEECCCCCEEEEEE ILEQDGAPVSQLSRIQSIRKALEKALSSDSPKLPRFRKLSRKMKPFNVPTQVSFLESSRH EEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHCCCC GTSMMELIALDSPGLLAKVGDIFYRCNTTLLAAKITTIGERAEDFFMLQTNDGLQLNETQ CHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEHHHHHHHCCCCCEEEEECCCCCEECCCH ENTLRDALIRALSAKNIESVN HHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MNIALLAKQSLIEQNQTLLASFKAKTPIEELVTQRCQFVDALVKQAWEQHGLREFDISLI CCEEHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECEEEE AVGGYGRGELHPHSDVDLLFLFNDILSPAAEAALSQFIAFLWDANLEIGHSVRTLNDTIT EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHE LGREDITIATNLLEARLLEGPEFLFDQLYDAIRQSDFWTSSDFFIAKRDEQNARHARASA ECCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHCCC FDLEPNIKSCPGGLRDIQTIAWVAMRHFGAARLEELVQYDFLETGELEELLECQHFLWKL CCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH RFALHMVVGRDENRLLFDVQRQVAELMGYEDATQLAVEQMMKRYYRTVRRVMELNEMLLQ HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFKRATLGHTKALEIQSIDKHYQRRGTFIEALSDDLFDSGEEIVRLFLLVAKNSNIKGIY HHHHHHCCCCCEEHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEE APTLRSLRRARRAQPQALQENPLCRQAFMEILRHPRGIVALSLMHKHGVLSAYLPAWRNI HHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHCCCCCEEHHHHHHCCCHHHHHHHHCCC EGQMQFDLFHAYTVDEHTHRLLLNIERFSQAEQKEEFPLGSILINQLPKKGLLVLGAIFH CCCEEEEEEEEEECCCHHHHHHEEHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHH DIAKGRGGDHSKLGGADALAFCKLHGLNDHDGRLVAWLVENHLVMSVTAQRRDISDPDVV HHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEHHHCCCCCHHHH ADFANKVRDAVHLSYLYCLTVADICATNEKTWNNWKGSLLRDLYFSTQRVLARGKEKPVD HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCH IRARVREYQAKAKKELLRRGLKEKDLDTLWQRFKADYFLRHQPNQVAWHAEAILKHKQQD HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHEECCCCCHHHHHHHHHHHCCCC EPLVLVSKHTTRGGTELFVYCQDRPKLFATVMAVLDNKNINVHDANIMTSKDNYALDTFV CCEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCEEECCEEEECCCCCEEEEEE ILEQDGAPVSQLSRIQSIRKALEKALSSDSPKLPRFRKLSRKMKPFNVPTQVSFLESSRH EEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHCCCC GTSMMELIALDSPGLLAKVGDIFYRCNTTLLAAKITTIGERAEDFFMLQTNDGLQLNETQ CHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEHHHHHHHCCCCCEEEEECCCCCEECCCH ENTLRDALIRALSAKNIESVN HHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12368813 [H]