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The map label for this gene is dapD [H]

Identifier: 126173685

GI number: 126173685

Start: 1678338

End: 1679162

Strand: Reverse

Name: dapD [H]

Synonym: Sbal_1447

Alternate gene names: 126173685

Gene position: 1679162-1678338 (Counterclockwise)

Preceding gene: 126173686

Following gene: 126173678

Centisome position: 32.75

GC content: 47.88

Gene sequence:

>825_bases
ATGGAGGCTTTACGCCAACGTATTGAGGCGGCTTTTGAAGCTCGCGCCGACATCACGCCAAGCACAGTTGACGCCAGCGT
GCGTGACGATGTGCAAAATGTCATCAATATGCTCGACAAAGGTGAAGTCCGTGTCGCCGAGAAAATCGACGGACAATGGC
ATGTACACCAATGGCTGAAAAAGGCGGTATTACTGTCCTTCCGTATTTTCGATAACGTGGTTATCGATGGCGCCGAAACC
AAATACTTCGACAAAGTGCCGTTAAAATTTGCCGAATATGATGAAGCTCGCTTTAAAGCGGAAGCCATTCGCGTGGTGCC
TTCGGCTACAGTGCGTAAAGGCTCATTCATCGGTAAAAATACCGTGTTGATGCCATCTTATGTGAACTTAGGTGCCTATG
TAGATGAAGGCACTATGGTTGATACTTGGGCGACCGTTGGCTCATGTGCACAAATCGGTAAAAATGTGCATTTATCTGGC
GGCGTAGGTATTGGTGGCGTACTTGAGCCATTACAAGCGGGCCCAACCATCATAGAAGATAACTGCTTTATCGGTGCACG
TTCTGAGATTGTTGAAGGCGTTGTGGTTGAAGAAGGCTCAGTGATTTCTATGGGCGTGTATATCGGCCAAAGCACTCGAA
TTTATGATCGCGAAACTGGTGAAGTGCATTACGGTCGTGTACCAGCAGGTTCCGTTGTCGTTTCTGGCAATCTGCCCTCT
GCCTGTGGCAAGTACAGCCTCTATGCCGCCATTATCGTTAAGAAAGTGGATGCAAAAACCCGCGGTAAAGTGGGTATCAA
CGAATTACTGCGTATTGTTGATTAA

Upstream 100 bases:

>100_bases
TAACGAAACCCAAGAGAATACCCTCAGGGACGCTTTAATCAGAGCCTTGAGTGCAAAGAATATCGAATCAGTTAATTAAC
GAGACCAGTGGGAGAAGTAA

Downstream 100 bases:

>100_bases
CAGTATTCGTTCGATAACATGAGTTCCATAAAAAAGATGCCCGCGGGCATCTTTTTTATTGTCAGTAAAATTTAGCCTAT
AGTTGCGCTGTCATTATCAG

Product: 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase

Products: NA

Alternate protein names: Tetrahydrodipicolinate N-succinyltransferase; THDP succinyltransferase; THP succinyltransferase; Tetrahydropicolinate succinylase [H]

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MEALRQRIEAAFEARADITPSTVDASVRDDVQNVINMLDKGEVRVAEKIDGQWHVHQWLKKAVLLSFRIFDNVVIDGAET
KYFDKVPLKFAEYDEARFKAEAIRVVPSATVRKGSFIGKNTVLMPSYVNLGAYVDEGTMVDTWATVGSCAQIGKNVHLSG
GVGIGGVLEPLQAGPTIIEDNCFIGARSEIVEGVVVEEGSVISMGVYIGQSTRIYDRETGEVHYGRVPAGSVVVSGNLPS
ACGKYSLYAAIIVKKVDAKTRGKVGINELLRIVD

Sequences:

>Translated_274_residues
MEALRQRIEAAFEARADITPSTVDASVRDDVQNVINMLDKGEVRVAEKIDGQWHVHQWLKKAVLLSFRIFDNVVIDGAET
KYFDKVPLKFAEYDEARFKAEAIRVVPSATVRKGSFIGKNTVLMPSYVNLGAYVDEGTMVDTWATVGSCAQIGKNVHLSG
GVGIGGVLEPLQAGPTIIEDNCFIGARSEIVEGVVVEEGSVISMGVYIGQSTRIYDRETGEVHYGRVPAGSVVVSGNLPS
ACGKYSLYAAIIVKKVDAKTRGKVGINELLRIVD
>Mature_274_residues
MEALRQRIEAAFEARADITPSTVDASVRDDVQNVINMLDKGEVRVAEKIDGQWHVHQWLKKAVLLSFRIFDNVVIDGAET
KYFDKVPLKFAEYDEARFKAEAIRVVPSATVRKGSFIGKNTVLMPSYVNLGAYVDEGTMVDTWATVGSCAQIGKNVHLSG
GVGIGGVLEPLQAGPTIIEDNCFIGARSEIVEGVVVEEGSVISMGVYIGQSTRIYDRETGEVHYGRVPAGSVVVSGNLPS
ACGKYSLYAAIIVKKVDAKTRGKVGINELLRIVD

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; fourth step. [C]

COG id: COG2171

COG function: function code E; Tetrahydrodipicolinate N-succinyltransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transferase hexapeptide repeat family [H]

Homologues:

Organism=Escherichia coli, GI1786362, Length=274, Percent_Identity=80.6569343065693, Blast_Score=438, Evalue=1e-124,

Paralogues:

None

Copy number: 420 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005664
- InterPro:   IPR018357
- InterPro:   IPR023180
- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: =2.3.1.117 [H]

Molecular weight: Translated: 29720; Mature: 29720

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: PS00101 HEXAPEP_TRANSFERASES

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEALRQRIEAAFEARADITPSTVDASVRDDVQNVINMLDKGEVRVAEKIDGQWHVHQWLK
CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEHHCCCCCHHHHHHH
KAVLLSFRIFDNVVIDGAETKYFDKVPLKFAEYDEARFKAEAIRVVPSATVRKGSFIGKN
HHHHHHHHHHHHEEECCCCCCCCCCCCCCHHCCHHHHHHHHHHEECCCCCCCCCCCCCCC
TVLMPSYVNLGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQAGPTIIED
EEECCCHHCCCEEECCCCEEEHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHCCCCEEEC
NCFIGARSEIVEGVVVEEGSVISMGVYIGQSTRIYDRETGEVHYGRVPAGSVVVSGNLPS
CCEECCHHHHHCCEEECCCCEEEEEEEECCCCEEEECCCCCEEECCCCCCCEEEECCCCC
ACGKYSLYAAIIVKKVDAKTRGKVGINELLRIVD
HHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCC
>Mature Secondary Structure
MEALRQRIEAAFEARADITPSTVDASVRDDVQNVINMLDKGEVRVAEKIDGQWHVHQWLK
CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEHHCCCCCHHHHHHH
KAVLLSFRIFDNVVIDGAETKYFDKVPLKFAEYDEARFKAEAIRVVPSATVRKGSFIGKN
HHHHHHHHHHHHEEECCCCCCCCCCCCCCHHCCHHHHHHHHHHEECCCCCCCCCCCCCCC
TVLMPSYVNLGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQAGPTIIED
EEECCCHHCCCEEECCCCEEEHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHCCCCEEEC
NCFIGARSEIVEGVVVEEGSVISMGVYIGQSTRIYDRETGEVHYGRVPAGSVVVSGNLPS
CCEECCHHHHHCCEEECCCCEEEEEEEECCCCEEEECCCCCEEECCCCCCCEEEECCCCC
ACGKYSLYAAIIVKKVDAKTRGKVGINELLRIVD
HHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA