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The map label for this gene is radC [C]

Identifier: 125624319

GI number: 125624319

Start: 1488359

End: 1489042

Strand: Reverse

Name: radC [C]

Synonym: llmg_1515

Alternate gene names: 125624319

Gene position: 1489042-1488359 (Counterclockwise)

Preceding gene: 125624320

Following gene: 125624317

Centisome position: 58.87

GC content: 33.77

Gene sequence:

>684_bases
ATGTACGAATTAAAAGAGAAATCTTATCCAATGCAACCAAGAGAGCGTTTAGAACTTTTAGGTGAAGAGTATTTGTCTGA
TGTTGAGTTACTTGCAATATTATTGCGGACGGGTCGAAAAAAATACTCATCATTGAATTTAGCTTTAGAACTTTTGCAAC
ATTTTGGGACATTGGATAATTTTCGCAAAGCATCTATAAGTGAACTCAAGGAGATTTCGGGTATTGGGCAAACAAAAGCT
ATTGAATTGCGAGCAATGATTGAACTTGGAAAAAGAATACAAACGACAACCAGAAAACGTTATGGTCAAGTTTTAAGTTC
AAAAGAATATGGCATGAGTCTTGCTTTTGAAATGCAAAATTTTGAGCAAGAACATCTTACCGCGACTTATTTAGATGGAC
AAAATCAGATTATTGAGAAGAAAACTATTTTTATCGGAGCATTTAATCATGCAACTGCTAGTCCTCGAGAGATCCTTTAT
CATGCAGTAAAAAATCTCTCGGTTGGTTTATTAGTCGCACATAATCACCCCTCGGGCAATTTACAACCCAGTCAAGCAGA
TAAAATTTTTACAAAAAAAATAAAAAATGCTTGTGATAATATAGGAATTAATTTTATTGATCATATTATTGTGGGAGCGG
GGAATTATTATAGTTTTCGGGAGAGAGATAGCAACTTATTTTAG

Upstream 100 bases:

>100_bases
GGTCAGTAATAAAATATAAAAAAGTTCTGATTCTGTCAGAACTTTTTTATATTTTTTAATTTGTCAGTGACAAACGATTT
ATTTTTTCGTATAAGTAAGT

Downstream 100 bases:

>100_bases
TTGATTAGTCTTAACTTCCAAAATATAATAAATGATTAACTCGATTGAAGATATGCTGGAATTAGTACTAAATAATAAAC
TAAAAATTTGTGAAAAAATT

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MYELKEKSYPMQPRERLELLGEEYLSDVELLAILLRTGRKKYSSLNLALELLQHFGTLDNFRKASISELKEISGIGQTKA
IELRAMIELGKRIQTTTRKRYGQVLSSKEYGMSLAFEMQNFEQEHLTATYLDGQNQIIEKKTIFIGAFNHATASPREILY
HAVKNLSVGLLVAHNHPSGNLQPSQADKIFTKKIKNACDNIGINFIDHIIVGAGNYYSFRERDSNLF

Sequences:

>Translated_227_residues
MYELKEKSYPMQPRERLELLGEEYLSDVELLAILLRTGRKKYSSLNLALELLQHFGTLDNFRKASISELKEISGIGQTKA
IELRAMIELGKRIQTTTRKRYGQVLSSKEYGMSLAFEMQNFEQEHLTATYLDGQNQIIEKKTIFIGAFNHATASPREILY
HAVKNLSVGLLVAHNHPSGNLQPSQADKIFTKKIKNACDNIGINFIDHIIVGAGNYYSFRERDSNLF
>Mature_227_residues
MYELKEKSYPMQPRERLELLGEEYLSDVELLAILLRTGRKKYSSLNLALELLQHFGTLDNFRKASISELKEISGIGQTKA
IELRAMIELGKRIQTTTRKRYGQVLSSKEYGMSLAFEMQNFEQEHLTATYLDGQNQIIEKKTIFIGAFNHATASPREILY
HAVKNLSVGLLVAHNHPSGNLQPSQADKIFTKKIKNACDNIGINFIDHIIVGAGNYYSFRERDSNLF

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=219, Percent_Identity=35.6164383561644, Blast_Score=151, Evalue=4e-38,
Organism=Escherichia coli, GI2367100, Length=108, Percent_Identity=39.8148148148148, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1788997, Length=156, Percent_Identity=33.3333333333333, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1788312, Length=116, Percent_Identity=35.3448275862069, Blast_Score=91, Evalue=7e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1515_LACLM (A2RLC4)

Other databases:

- EMBL:   AM406671
- RefSeq:   YP_001032802.1
- ProteinModelPortal:   A2RLC4
- STRING:   A2RLC4
- GeneID:   4796930
- GenomeReviews:   AM406671_GR
- KEGG:   llm:llmg_1515
- eggNOG:   COG2003
- HOGENOM:   HBG751042
- OMA:   LDHLILG
- ProtClustDB:   PRK00024
- InterPro:   IPR003583
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891
- SMART:   SM00278
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466; SSF47781 RuvA_2_like

EC number: NA

Molecular weight: Translated: 25872; Mature: 25872

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYELKEKSYPMQPRERLELLGEEYLSDVELLAILLRTGRKKYSSLNLALELLQHFGTLDN
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHH
FRKASISELKEISGIGQTKAIELRAMIELGKRIQTTTRKRYGQVLSSKEYGMSLAFEMQN
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCEEEHHHHH
FEQEHLTATYLDGQNQIIEKKTIFIGAFNHATASPREILYHAVKNLSVGLLVAHNHPSGN
HHHHHCEEEEECCCCHHHHHHEEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCC
LQPSQADKIFTKKIKNACDNIGINFIDHIIVGAGNYYSFRERDSNLF
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHCCCCCCC
>Mature Secondary Structure
MYELKEKSYPMQPRERLELLGEEYLSDVELLAILLRTGRKKYSSLNLALELLQHFGTLDN
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHH
FRKASISELKEISGIGQTKAIELRAMIELGKRIQTTTRKRYGQVLSSKEYGMSLAFEMQN
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCEEEHHHHH
FEQEHLTATYLDGQNQIIEKKTIFIGAFNHATASPREILYHAVKNLSVGLLVAHNHPSGN
HHHHHCEEEEECCCCHHHHHHEEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCC
LQPSQADKIFTKKIKNACDNIGINFIDHIIVGAGNYYSFRERDSNLF
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA