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The map label for this gene is ddpA [H]

Identifier: 125624269

GI number: 125624269

Start: 1433227

End: 1434771

Strand: Reverse

Name: ddpA [H]

Synonym: llmg_1461

Alternate gene names: 125624269

Gene position: 1434771-1433227 (Counterclockwise)

Preceding gene: 125624270

Following gene: 125624268

Centisome position: 56.72

GC content: 38.32

Gene sequence:

>1545_bases
TTGACCTTTGGGAAACCCGATGGGCCGCAAACTAATAATTCTAATCCCTTTATCGGAACCTCTGCAGCTTCAAATCAAGG
CTATCGTTATGCTATTTATGAAACACTTGTTCAATACAACGATGTTGATCCTTCCCAAAAACCAAAAGCTTGGTTAGCCA
CAAAATGGGAATGGAACACAGATTATACTCAAGTTAAATTCACCATTCGTAATGGAGTAAAATGGTCTGATGGAACCCCA
TTAACAGCAGAAGACGTCGCTTTTACTTTTAATCTTATTAAAAATACACCGGCTTTAAATACTTCGTCCATTCCATTTGG
AGATATTACGACTTCTGGTAATACAGTAACTATCAACTTTACCTCAAATCAATTTGTTCATCAAACAGCCATGAATGGAC
AATTTATTGTTTCTGAGCATATCTGGAAAAATCAAGACCCGACTAAATGGACTAACCAAAAACCAGTAGGAACGGGGCCT
TACGTATTAAAAACTTGGTCAACCCAAGGGGTTACACTTACAGCCAATCCAAATTACTGGGGAGGTAAACTTAAAGTTCC
AACCATTCGTTATGTTGAACACAATGATAATACTTCATTGACAAGTGCGATGACCTCTGGTCAGGTTGATGATGGTTTTG
TTTATATCGCTAATTACAAAACAGCATGGCTTGCTAAAAATAAAGCAAATCAAGCTTGGTATCCATCAACTTTAGGTAAT
ACAACTCTTTTTACCAATGATGCTAAAGGCGCATTTTCTGATATTAATTTCCGTAAAGCTGTATCTACAATCATTGATCG
TAAACAGTTATCTCAACAAGGGACCACGGGAGCATCTAATCCAATCACAAGCCTTACAGGACTTCCAGAATCTGGTAAAA
CTTTCATTAGTACAGATTATGAAGGTAAGACCTTTAAGTCAAGCGCTAGTGATGCTAAAGCCATTCTCACTAAAGCAGGC
TATACCGGAGTTGGAACTAAAAATAGTTTGAAAGACTCTAAAGGAAATGCGGTATCTGTAATGTTAACAGACCCATCAGG
TTGGTCAGACTATGATGCGGAACTTCAATTAATTGGTTCCGAAATCCAAGAACTTGGAGCTACAGTTACTGTGCAAAATC
CATCTTTTGATACTTGGAGTGACCAAGTCAACAAAGGGAATTTCGATGGTGCGTTGCACTGGACAGATAGTGGATTTACT
CCTTACAATATTTATCTTGACTCAATGGATCAATCATTTTACAAGCCGCTTGGACAAGTTGCTAACTATAATTTCGGGCG
CTTCCAAAGTCCAGAAGCTACAGCAGCTTTAAAAGATTATGCGGCAGCAACATCTGATGCACAACGAACTAAAGACCTTG
CAACAATTGAAAAGGTTTATGTAGACCAAGTGCCAGTTATTCCCGTGCTAGAAGTTCCAGTTTGGGGAAATTATACTTCA
AGATACTATACTGGCTGGCCAACTCAATCGAATCCTTATACCGATATTAATATGACAACCCCTGCAAAAACATTAGTATT
GACAAAACTTCATGCAGCAAACTAA

Upstream 100 bases:

>100_bases
GGTAGCACTAGGCAGTGCGTCTATTCTTGCTATTACAACACTTGCAGCTTGTGGTTCTTCAAAAGCGAGTGGAAGTAAAA
GTTCAACATCAGCCCATGTT

Downstream 100 bases:

>100_bases
TGAATAAATTACGTAAAAGGGTTCTTTTGAGCCCTTTCTTTACTAATATTATTGAAGAAGGAGGGATAAAATTTGCCATC
AGAAAAATTAGAAGTTGGAA

Product: putative di/Tri-peptide binding protein precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 514; Mature: 513

Protein sequence:

>514_residues
MTFGKPDGPQTNNSNPFIGTSAASNQGYRYAIYETLVQYNDVDPSQKPKAWLATKWEWNTDYTQVKFTIRNGVKWSDGTP
LTAEDVAFTFNLIKNTPALNTSSIPFGDITTSGNTVTINFTSNQFVHQTAMNGQFIVSEHIWKNQDPTKWTNQKPVGTGP
YVLKTWSTQGVTLTANPNYWGGKLKVPTIRYVEHNDNTSLTSAMTSGQVDDGFVYIANYKTAWLAKNKANQAWYPSTLGN
TTLFTNDAKGAFSDINFRKAVSTIIDRKQLSQQGTTGASNPITSLTGLPESGKTFISTDYEGKTFKSSASDAKAILTKAG
YTGVGTKNSLKDSKGNAVSVMLTDPSGWSDYDAELQLIGSEIQELGATVTVQNPSFDTWSDQVNKGNFDGALHWTDSGFT
PYNIYLDSMDQSFYKPLGQVANYNFGRFQSPEATAALKDYAAATSDAQRTKDLATIEKVYVDQVPVIPVLEVPVWGNYTS
RYYTGWPTQSNPYTDINMTTPAKTLVLTKLHAAN

Sequences:

>Translated_514_residues
MTFGKPDGPQTNNSNPFIGTSAASNQGYRYAIYETLVQYNDVDPSQKPKAWLATKWEWNTDYTQVKFTIRNGVKWSDGTP
LTAEDVAFTFNLIKNTPALNTSSIPFGDITTSGNTVTINFTSNQFVHQTAMNGQFIVSEHIWKNQDPTKWTNQKPVGTGP
YVLKTWSTQGVTLTANPNYWGGKLKVPTIRYVEHNDNTSLTSAMTSGQVDDGFVYIANYKTAWLAKNKANQAWYPSTLGN
TTLFTNDAKGAFSDINFRKAVSTIIDRKQLSQQGTTGASNPITSLTGLPESGKTFISTDYEGKTFKSSASDAKAILTKAG
YTGVGTKNSLKDSKGNAVSVMLTDPSGWSDYDAELQLIGSEIQELGATVTVQNPSFDTWSDQVNKGNFDGALHWTDSGFT
PYNIYLDSMDQSFYKPLGQVANYNFGRFQSPEATAALKDYAAATSDAQRTKDLATIEKVYVDQVPVIPVLEVPVWGNYTS
RYYTGWPTQSNPYTDINMTTPAKTLVLTKLHAAN
>Mature_513_residues
TFGKPDGPQTNNSNPFIGTSAASNQGYRYAIYETLVQYNDVDPSQKPKAWLATKWEWNTDYTQVKFTIRNGVKWSDGTPL
TAEDVAFTFNLIKNTPALNTSSIPFGDITTSGNTVTINFTSNQFVHQTAMNGQFIVSEHIWKNQDPTKWTNQKPVGTGPY
VLKTWSTQGVTLTANPNYWGGKLKVPTIRYVEHNDNTSLTSAMTSGQVDDGFVYIANYKTAWLAKNKANQAWYPSTLGNT
TLFTNDAKGAFSDINFRKAVSTIIDRKQLSQQGTTGASNPITSLTGLPESGKTFISTDYEGKTFKSSASDAKAILTKAGY
TGVGTKNSLKDSKGNAVSVMLTDPSGWSDYDAELQLIGSEIQELGATVTVQNPSFDTWSDQVNKGNFDGALHWTDSGFTP
YNIYLDSMDQSFYKPLGQVANYNFGRFQSPEATAALKDYAAATSDAQRTKDLATIEKVYVDQVPVIPVLEVPVWGNYTSR
YYTGWPTQSNPYTDINMTTPAKTLVLTKLHAAN

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: COG0747

COG function: function code E; ABC-type dipeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=449, Percent_Identity=26.0579064587973, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI87081878, Length=454, Percent_Identity=24.2290748898678, Blast_Score=89, Evalue=9e-19,
Organism=Escherichia coli, GI1789887, Length=395, Percent_Identity=23.7974683544304, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1789397, Length=481, Percent_Identity=22.6611226611227, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 56527; Mature: 56396

Theoretical pI: Translated: 6.70; Mature: 6.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFGKPDGPQTNNSNPFIGTSAASNQGYRYAIYETLVQYNDVDPSQKPKAWLATKWEWNT
CCCCCCCCCCCCCCCCEEEECCCCCCCEEEHHHHHHHHHCCCCCCCCCCEEEEEEEECCC
DYTQVKFTIRNGVKWSDGTPLTAEDVAFTFNLIKNTPALNTSSIPFGDITTSGNTVTINF
CEEEEEEEEECCEEECCCCCCCHHHHEEEEEEHHCCCCCCCCCCCCCCEECCCCEEEEEE
TSNQFVHQTAMNGQFIVSEHIWKNQDPTKWTNQKPVGTGPYVLKTWSTQGVTLTANPNYW
CCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCC
GGKLKVPTIRYVEHNDNTSLTSAMTSGQVDDGFVYIANYKTAWLAKNKANQAWYPSTLGN
CCEEECCEEEEEEECCCCCHHHHHHCCCCCCCEEEEEECCEEEEECCCCCCCCCCCCCCC
TTLFTNDAKGAFSDINFRKAVSTIIDRKQLSQQGTTGASNPITSLTGLPESGKTFISTDY
CEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCEEEEECC
EGKTFKSSASDAKAILTKAGYTGVGTKNSLKDSKGNAVSVMLTDPSGWSDYDAELQLIGS
CCCEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHEEHHH
EIQELGATVTVQNPSFDTWSDQVNKGNFDGALHWTDSGFTPYNIYLDSMDQSFYKPLGQV
HHHHCCCEEEEECCCCCCHHHHCCCCCCCCEEEECCCCCCEEEEEEECCCHHHHHHHHHH
ANYNFGRFQSPEATAALKDYAAATSDAQRTKDLATIEKVYVDQVPVIPVLEVPVWGNYTS
HCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
RYYTGWPTQSNPYTDINMTTPAKTLVLTKLHAAN
CEEECCCCCCCCEEEEEECCCCCEEEEEEEECCC
>Mature Secondary Structure 
TFGKPDGPQTNNSNPFIGTSAASNQGYRYAIYETLVQYNDVDPSQKPKAWLATKWEWNT
CCCCCCCCCCCCCCCEEEECCCCCCCEEEHHHHHHHHHCCCCCCCCCCEEEEEEEECCC
DYTQVKFTIRNGVKWSDGTPLTAEDVAFTFNLIKNTPALNTSSIPFGDITTSGNTVTINF
CEEEEEEEEECCEEECCCCCCCHHHHEEEEEEHHCCCCCCCCCCCCCCEECCCCEEEEEE
TSNQFVHQTAMNGQFIVSEHIWKNQDPTKWTNQKPVGTGPYVLKTWSTQGVTLTANPNYW
CCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCC
GGKLKVPTIRYVEHNDNTSLTSAMTSGQVDDGFVYIANYKTAWLAKNKANQAWYPSTLGN
CCEEECCEEEEEEECCCCCHHHHHHCCCCCCCEEEEEECCEEEEECCCCCCCCCCCCCCC
TTLFTNDAKGAFSDINFRKAVSTIIDRKQLSQQGTTGASNPITSLTGLPESGKTFISTDY
CEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCEEEEECC
EGKTFKSSASDAKAILTKAGYTGVGTKNSLKDSKGNAVSVMLTDPSGWSDYDAELQLIGS
CCCEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHEEHHH
EIQELGATVTVQNPSFDTWSDQVNKGNFDGALHWTDSGFTPYNIYLDSMDQSFYKPLGQV
HHHHCCCEEEEECCCCCCHHHHCCCCCCCCEEEECCCCCCEEEEEEECCCHHHHHHHHHH
ANYNFGRFQSPEATAALKDYAAATSDAQRTKDLATIEKVYVDQVPVIPVLEVPVWGNYTS
HCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
RYYTGWPTQSNPYTDINMTTPAKTLVLTKLHAAN
CEEECCCCCCCCEEEEEECCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]