| Definition | Methanocorpusculum labreanum Z chromosome, complete genome. |
|---|---|
| Accession | NC_008942 |
| Length | 1,804,962 |
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The map label for this gene is oppF [C]
Identifier: 124485539
GI number: 124485539
Start: 689928
End: 690845
Strand: Reverse
Name: oppF [C]
Synonym: Mlab_0716
Alternate gene names: 124485539
Gene position: 690845-689928 (Counterclockwise)
Preceding gene: 124485540
Following gene: 124485538
Centisome position: 38.27
GC content: 54.9
Gene sequence:
>918_bases ATGCTTAGAGGAGAGGAACTAAGGAAAGTCTATACGTCCGGTATGATTTCCGTGACGAAGAAGGTGGCCGTGGACCGGGT AAGTATTTCGATCGGCAAAGGCGAGACGATCGCGATCGTCGGGGAGTCGGGATGCGGGAAGAGCACGCTCGTGAAAATGC TCACCATGCAGCTTCCGGCAACCGAAGGCGAGGTGTACTGTTCCGGTGAGAAACTGACCGGGATGAAGTGGAAGGAGCTT CGGCAGCACATCGTGAAGTTCCAGATGATCCCTCAGAACCCTGACGATGCGGTGGATCCGCGGTGGGAACTCGGAAGGTC GGTGGCCGAACCGCTGGTTCTTTCCGGGAAGTATTCACGGGGAGAGATCGCCAAGATGGTGCCTGAACTTCTCGCCGAGG TCGGACTCGGACCGGAGTTCATAACAAGGTTCCCGCATCAGGTGAGCGGCGGCGAACTGCAGAGGGTGGTTATCGCCCGT GCCCTGGCACTGAAACCGGATCTGCTGATCTGTGACGAGGCGACCTCGATGCTGGATGTCTCCGTGCAGTCATACATCAT GTCCCTGCTGAAGGATATTCAGAAGAAGCGAAATATTGCTCTTATTATCATCACACACGATCTGGTGTTTGCAAACGTCG TGGCTGATCTGACGTATGTGATGTTCGGGGGAAAATTCGTCGAGATCGGGGAGGATGTGTTCACTCATCCCCTGCATCCC TATACGCAGGCGTTGTGGGATGCGGCGCATTACCGGGAAATGGCGGTGCTTCCCAGCGAAAAACCACCTATTCCTGAAGA GGGCTGCAGATATTTTGACCGCTGCGCTTTCCGCGATGATCTGTGTAAGGAGATGCAGGTCTTACGAAACATCGACGGAA GAAAGGTTCGCTGTGTCCATCCGCTCGGATATACCTGA
Upstream 100 bases:
>100_bases TGCAGATTTAATCCGCGGTGCCCCTTTGCCGACAACAGGTGCCGGACGGAAAAACCGCCGATGACCGAAACGAACGGACG AACCGTGAGGTGCTGGAAGT
Downstream 100 bases:
>100_bases CCGGATACAGGCCCTGCAGCAGGATTGAGCGAAAATCACCCATATTTTTTTTTGAAACCACCCTATTTCATGGTTTTTTC CGATTTTCTCTAGTATTATC
Product: acetylglutamate semialdehyde dehydrogenase-like protein
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 305; Mature: 305
Protein sequence:
>305_residues MLRGEELRKVYTSGMISVTKKVAVDRVSISIGKGETIAIVGESGCGKSTLVKMLTMQLPATEGEVYCSGEKLTGMKWKEL RQHIVKFQMIPQNPDDAVDPRWELGRSVAEPLVLSGKYSRGEIAKMVPELLAEVGLGPEFITRFPHQVSGGELQRVVIAR ALALKPDLLICDEATSMLDVSVQSYIMSLLKDIQKKRNIALIIITHDLVFANVVADLTYVMFGGKFVEIGEDVFTHPLHP YTQALWDAAHYREMAVLPSEKPPIPEEGCRYFDRCAFRDDLCKEMQVLRNIDGRKVRCVHPLGYT
Sequences:
>Translated_305_residues MLRGEELRKVYTSGMISVTKKVAVDRVSISIGKGETIAIVGESGCGKSTLVKMLTMQLPATEGEVYCSGEKLTGMKWKEL RQHIVKFQMIPQNPDDAVDPRWELGRSVAEPLVLSGKYSRGEIAKMVPELLAEVGLGPEFITRFPHQVSGGELQRVVIAR ALALKPDLLICDEATSMLDVSVQSYIMSLLKDIQKKRNIALIIITHDLVFANVVADLTYVMFGGKFVEIGEDVFTHPLHP YTQALWDAAHYREMAVLPSEKPPIPEEGCRYFDRCAFRDDLCKEMQVLRNIDGRKVRCVHPLGYT >Mature_305_residues MLRGEELRKVYTSGMISVTKKVAVDRVSISIGKGETIAIVGESGCGKSTLVKMLTMQLPATEGEVYCSGEKLTGMKWKEL RQHIVKFQMIPQNPDDAVDPRWELGRSVAEPLVLSGKYSRGEIAKMVPELLAEVGLGPEFITRFPHQVSGGELQRVVIAR ALALKPDLLICDEATSMLDVSVQSYIMSLLKDIQKKRNIALIIITHDLVFANVVADLTYVMFGGKFVEIGEDVFTHPLHP YTQALWDAAHYREMAVLPSEKPPIPEEGCRYFDRCAFRDDLCKEMQVLRNIDGRKVRCVHPLGYT
Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for energy coupling to the transport system [H]
COG id: COG4608
COG function: function code E; ABC-type oligopeptide transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI42741659, Length=198, Percent_Identity=32.3232323232323, Blast_Score=85, Evalue=1e-16, Organism=Homo sapiens, GI148612844, Length=219, Percent_Identity=32.4200913242009, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI255708477, Length=219, Percent_Identity=32.4200913242009, Blast_Score=83, Evalue=4e-16, Organism=Homo sapiens, GI9961250, Length=194, Percent_Identity=30.9278350515464, Blast_Score=82, Evalue=7e-16, Organism=Homo sapiens, GI4505771, Length=194, Percent_Identity=30.9278350515464, Blast_Score=82, Evalue=7e-16, Organism=Homo sapiens, GI9961252, Length=194, Percent_Identity=30.9278350515464, Blast_Score=82, Evalue=9e-16, Organism=Homo sapiens, GI42490749, Length=241, Percent_Identity=30.7053941908714, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI21536376, Length=237, Percent_Identity=27.8481012658228, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI9955963, Length=215, Percent_Identity=29.7674418604651, Blast_Score=72, Evalue=8e-13, Organism=Homo sapiens, GI116734710, Length=233, Percent_Identity=27.0386266094421, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI171184400, Length=224, Percent_Identity=29.0178571428571, Blast_Score=69, Evalue=7e-12, Organism=Homo sapiens, GI9665248, Length=251, Percent_Identity=27.4900398406374, Blast_Score=68, Evalue=1e-11, Organism=Escherichia coli, GI1787500, Length=291, Percent_Identity=40.5498281786942, Blast_Score=200, Evalue=1e-52, Organism=Escherichia coli, GI1789962, Length=312, Percent_Identity=37.8205128205128, Blast_Score=197, Evalue=5e-52, Organism=Escherichia coli, GI1787758, Length=295, Percent_Identity=34.5762711864407, Blast_Score=181, Evalue=5e-47, Organism=Escherichia coli, GI145693107, Length=297, Percent_Identity=37.3737373737374, Blast_Score=176, Evalue=2e-45, Organism=Escherichia coli, GI1789963, Length=300, Percent_Identity=37.3333333333333, Blast_Score=166, Evalue=1e-42, Organism=Escherichia coli, GI48994883, Length=320, Percent_Identity=34.6875, Blast_Score=155, Evalue=4e-39, Organism=Escherichia coli, GI1787759, Length=294, Percent_Identity=33.6734693877551, Blast_Score=149, Evalue=2e-37, Organism=Escherichia coli, GI1788506, Length=266, Percent_Identity=36.4661654135338, Blast_Score=141, Evalue=5e-35, Organism=Escherichia coli, GI1787547, Length=245, Percent_Identity=33.8775510204082, Blast_Score=136, Evalue=1e-33, Organism=Escherichia coli, GI1786398, Length=245, Percent_Identity=35.1020408163265, Blast_Score=136, Evalue=2e-33, Organism=Escherichia coli, GI48994997, Length=222, Percent_Identity=36.4864864864865, Blast_Score=133, Evalue=2e-32, Organism=Escherichia coli, GI1789891, Length=244, Percent_Identity=34.8360655737705, Blast_Score=131, Evalue=5e-32, Organism=Escherichia coli, GI1787548, Length=305, Percent_Identity=30.4918032786885, Blast_Score=120, Evalue=1e-28, Organism=Escherichia coli, GI87081791, Length=222, Percent_Identity=36.036036036036, Blast_Score=118, Evalue=4e-28, Organism=Escherichia coli, GI87081709, Length=240, Percent_Identity=31.6666666666667, Blast_Score=115, Evalue=2e-27, Organism=Escherichia coli, GI1788225, Length=237, Percent_Identity=31.6455696202532, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI87081834, Length=216, Percent_Identity=36.5740740740741, Blast_Score=105, Evalue=5e-24, Organism=Escherichia coli, GI1788450, Length=227, Percent_Identity=29.5154185022026, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1789032, Length=228, Percent_Identity=31.140350877193, Blast_Score=103, Evalue=2e-23, Organism=Escherichia coli, GI1789890, Length=233, Percent_Identity=32.1888412017167, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1787029, Length=211, Percent_Identity=32.2274881516588, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1786703, Length=188, Percent_Identity=36.7021276595745, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1787370, Length=219, Percent_Identity=31.5068493150685, Blast_Score=96, Evalue=4e-21, Organism=Escherichia coli, GI1789873, Length=225, Percent_Identity=32.8888888888889, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1787712, Length=223, Percent_Identity=31.390134529148, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI87082267, Length=220, Percent_Identity=29.5454545454545, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1786563, Length=191, Percent_Identity=32.9842931937173, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1787089, Length=223, Percent_Identity=29.1479820627803, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1790162, Length=232, Percent_Identity=28.0172413793103, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI1786345, Length=221, Percent_Identity=29.8642533936652, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI1790467, Length=226, Percent_Identity=27.8761061946903, Blast_Score=84, Evalue=9e-18, Organism=Escherichia coli, GI1788761, Length=218, Percent_Identity=28.4403669724771, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1789672, Length=250, Percent_Identity=28, Blast_Score=83, Evalue=3e-17, Organism=Escherichia coli, GI1786803, Length=241, Percent_Identity=29.4605809128631, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1787112, Length=220, Percent_Identity=29.5454545454545, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI48995001, Length=208, Percent_Identity=31.7307692307692, Blast_Score=82, Evalue=6e-17, Organism=Escherichia coli, GI1786698, Length=211, Percent_Identity=26.5402843601896, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI1787143, Length=200, Percent_Identity=30.5, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1786872, Length=198, Percent_Identity=30.8080808080808, Blast_Score=79, Evalue=5e-16, Organism=Escherichia coli, GI1787105, Length=219, Percent_Identity=31.5068493150685, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1786654, Length=213, Percent_Identity=28.6384976525822, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1788644, Length=233, Percent_Identity=27.8969957081545, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1789751, Length=227, Percent_Identity=23.7885462555066, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1790534, Length=207, Percent_Identity=29.4685990338164, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1787164, Length=208, Percent_Identity=27.4038461538462, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1790739, Length=240, Percent_Identity=27.9166666666667, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1789991, Length=225, Percent_Identity=28, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1786975, Length=206, Percent_Identity=27.1844660194175, Blast_Score=65, Evalue=7e-12, Organism=Escherichia coli, GI1787182, Length=209, Percent_Identity=28.2296650717703, Blast_Score=64, Evalue=8e-12, Organism=Escherichia coli, GI1787041, Length=221, Percent_Identity=28.5067873303167, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787792, Length=208, Percent_Identity=27.4038461538462, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1789586, Length=207, Percent_Identity=26.5700483091787, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1789864, Length=228, Percent_Identity=21.4912280701754, Blast_Score=61, Evalue=1e-10, Organism=Caenorhabditis elegans, GI71984940, Length=207, Percent_Identity=36.7149758454106, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17558664, Length=215, Percent_Identity=31.6279069767442, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI71992285, Length=215, Percent_Identity=32.5581395348837, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI71996809, Length=225, Percent_Identity=29.3333333333333, Blast_Score=86, Evalue=3e-17, Organism=Caenorhabditis elegans, GI193211017, Length=225, Percent_Identity=29.3333333333333, Blast_Score=85, Evalue=5e-17, Organism=Caenorhabditis elegans, GI193211015, Length=225, Percent_Identity=29.3333333333333, Blast_Score=85, Evalue=6e-17, Organism=Caenorhabditis elegans, GI17541710, Length=213, Percent_Identity=30.0469483568075, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI71996550, Length=226, Percent_Identity=31.858407079646, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI212646699, Length=226, Percent_Identity=29.2035398230088, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI193202349, Length=219, Percent_Identity=31.9634703196347, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17567265, Length=194, Percent_Identity=32.9896907216495, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI115535101, Length=196, Percent_Identity=31.6326530612245, Blast_Score=77, Evalue=8e-15, Organism=Caenorhabditis elegans, GI17567269, Length=198, Percent_Identity=30.3030303030303, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI115533592, Length=217, Percent_Identity=29.9539170506912, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI193208177, Length=194, Percent_Identity=29.3814432989691, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI115534520, Length=207, Percent_Identity=27.536231884058, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193209708, Length=208, Percent_Identity=33.1730769230769, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17543740, Length=196, Percent_Identity=29.0816326530612, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI71992290, Length=233, Percent_Identity=29.1845493562232, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17569145, Length=224, Percent_Identity=26.7857142857143, Blast_Score=67, Evalue=9e-12, Organism=Caenorhabditis elegans, GI17533971, Length=187, Percent_Identity=29.9465240641711, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17553372, Length=220, Percent_Identity=27.7272727272727, Blast_Score=65, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=237, Percent_Identity=27.4261603375527, Blast_Score=86, Evalue=5e-18, Organism=Saccharomyces cerevisiae, GI6322640, Length=222, Percent_Identity=27.027027027027, Blast_Score=64, Evalue=2e-11, Organism=Drosophila melanogaster, GI24641565, Length=216, Percent_Identity=30.0925925925926, Blast_Score=82, Evalue=5e-16, Organism=Drosophila melanogaster, GI85726357, Length=218, Percent_Identity=28.8990825688073, Blast_Score=78, Evalue=7e-15, Organism=Drosophila melanogaster, GI281363262, Length=176, Percent_Identity=30.6818181818182, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI24653245, Length=176, Percent_Identity=30.6818181818182, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI24659289, Length=226, Percent_Identity=29.646017699115, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI17136662, Length=220, Percent_Identity=28.1818181818182, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI116007184, Length=228, Percent_Identity=25, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI221500365, Length=228, Percent_Identity=25, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI85724864, Length=172, Percent_Identity=30.8139534883721, Blast_Score=64, Evalue=9e-11, Organism=Drosophila melanogaster, GI24580555, Length=172, Percent_Identity=30.8139534883721, Blast_Score=64, Evalue=9e-11, Organism=Drosophila melanogaster, GI85816269, Length=172, Percent_Identity=30.8139534883721, Blast_Score=64, Evalue=9e-11, Organism=Drosophila melanogaster, GI24580553, Length=172, Percent_Identity=30.8139534883721, Blast_Score=64, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 34108; Mature: 34108
Theoretical pI: Translated: 7.14; Mature: 7.14
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRGEELRKVYTSGMISVTKKVAVDRVSISIGKGETIAIVGESGCGKSTLVKMLTMQLPA CCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCC TEGEVYCSGEKLTGMKWKELRQHIVKFQMIPQNPDDAVDPRWELGRSVAEPLVLSGKYSR CCCCEEECCCCCCCCCHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHCCCEECCCCCC GEIAKMVPELLAEVGLGPEFITRFPHQVSGGELQRVVIARALALKPDLLICDEATSMLDV HHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEECCHHHHHHH SVQSYIMSLLKDIQKKRNIALIIITHDLVFANVVADLTYVMFGGKFVEIGEDVFTHPLHP HHHHHHHHHHHHHHHHCCEEEEEEEHHHHHHHHHHHHHHHHHCCEEEECCHHHHHCCCCH YTQALWDAAHYREMAVLPSEKPPIPEEGCRYFDRCAFRDDLCKEMQVLRNIDGRKVRCVH HHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEC PLGYT CCCCC >Mature Secondary Structure MLRGEELRKVYTSGMISVTKKVAVDRVSISIGKGETIAIVGESGCGKSTLVKMLTMQLPA CCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCC TEGEVYCSGEKLTGMKWKELRQHIVKFQMIPQNPDDAVDPRWELGRSVAEPLVLSGKYSR CCCCEEECCCCCCCCCHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHCCCEECCCCCC GEIAKMVPELLAEVGLGPEFITRFPHQVSGGELQRVVIARALALKPDLLICDEATSMLDV HHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEECCHHHHHHH SVQSYIMSLLKDIQKKRNIALIIITHDLVFANVVADLTYVMFGGKFVEIGEDVFTHPLHP HHHHHHHHHHHHHHHHCCEEEEEEEHHHHHHHHHHHHHHHHHCCEEEECCHHHHHCCCCH YTQALWDAAHYREMAVLPSEKPPIPEEGCRYFDRCAFRDDLCKEMQVLRNIDGRKVRCVH HHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEC PLGYT CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11756688 [H]