| Definition | Methanocorpusculum labreanum Z chromosome, complete genome. |
|---|---|
| Accession | NC_008942 |
| Length | 1,804,962 |
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The map label for this gene is pheA [H]
Identifier: 124485423
GI number: 124485423
Start: 567641
End: 568438
Strand: Reverse
Name: pheA [H]
Synonym: Mlab_0598
Alternate gene names: 124485423
Gene position: 568438-567641 (Counterclockwise)
Preceding gene: 124485424
Following gene: 124485422
Centisome position: 31.49
GC content: 51.13
Gene sequence:
>798_bases ATGACATTGGCAGTACTCGGCCCGAAAGGCACGTTCTCCTGCGAGCTTGCCGAAAAAATCAGGAACGAAAATGAAGAGAT CATTCTGTTCCCAACGATCCGGGACGTTTTCACCGCGGTCCTCGAGAAAAATATCCGGGGCATCGTTCCGGTTGAAAACA GCGAGGCGGGCGGCGTTGGCGAAACCCTGGACGGCCTTTTACAGACTGAGTGCCGTATCACCGCTGAATATTATATGCCG ATCCGTCATTTCTTCGTTTCAAGATACAGTCCTGATGAGATCTCGGTCATCTACACTCATCCGCAGTCCCATGAGCAGTG CAGCATCTATCTGAACGGCATGAAAAGGGCCTCCCTGATCCACACGAGCAGCAATGCCCAGAGTGCCAAAGAGGCGTCGT TTATCAGCGGATCGGCGGCCGTAACGACGGAAAGCGCCGCAAAACTGTATGATCTGCCCATACTGCAGAAGGATATTCAG AATTCACTAAACAATACCACGCGGTTTCTTGAGATCTCGGCAGGTGCGCTAGATCCGGATGACCCCGAAAAATGCAGTGT CGTCATCATCCCAAGAGAAAACAGGCCGGGTCTGTTGTATGGGATCTTGGGAATTTTTGCACAAAGAGGAATCAATCTGA CGCGTATCGAGTCCCGGCCGTCGAAGGAGGGGATCGGAAGATATGTCTTCTTCATCGATTTTGAGACCGATCCCGGCTGG CAGGAGACGATCACGGAGTTGAAAAAAATCACCGGCGTCAAGGAACTGGGCTGCTATAGAAAAAAGGATTACGTATAA
Upstream 100 bases:
>100_bases TCGCCGCGTTCTTCACGGAAAACAGCGATGCGTTCAAAGCCTATATTCCCCAGGCAACGGAAGAGACCGATCTTATGATA AATACACTGGTGAAGATGAA
Downstream 100 bases:
>100_bases TCAGGTGTCGAATACAGAAATACTGATACGGATATCTCACCGGGCACAAGTAGAGATATCTCCTTTATTATTCCTCTATT ATTATAGTGCTAAAGACGGG
Product: prephenate dehydratase
Products: NA
Alternate protein names: Chorismate mutase; CM; Prephenate dehydratase; PDT [H]
Number of amino acids: Translated: 265; Mature: 264
Protein sequence:
>265_residues MTLAVLGPKGTFSCELAEKIRNENEEIILFPTIRDVFTAVLEKNIRGIVPVENSEAGGVGETLDGLLQTECRITAEYYMP IRHFFVSRYSPDEISVIYTHPQSHEQCSIYLNGMKRASLIHTSSNAQSAKEASFISGSAAVTTESAAKLYDLPILQKDIQ NSLNNTTRFLEISAGALDPDDPEKCSVVIIPRENRPGLLYGILGIFAQRGINLTRIESRPSKEGIGRYVFFIDFETDPGW QETITELKKITGVKELGCYRKKDYV
Sequences:
>Translated_265_residues MTLAVLGPKGTFSCELAEKIRNENEEIILFPTIRDVFTAVLEKNIRGIVPVENSEAGGVGETLDGLLQTECRITAEYYMP IRHFFVSRYSPDEISVIYTHPQSHEQCSIYLNGMKRASLIHTSSNAQSAKEASFISGSAAVTTESAAKLYDLPILQKDIQ NSLNNTTRFLEISAGALDPDDPEKCSVVIIPRENRPGLLYGILGIFAQRGINLTRIESRPSKEGIGRYVFFIDFETDPGW QETITELKKITGVKELGCYRKKDYV >Mature_264_residues TLAVLGPKGTFSCELAEKIRNENEEIILFPTIRDVFTAVLEKNIRGIVPVENSEAGGVGETLDGLLQTECRITAEYYMPI RHFFVSRYSPDEISVIYTHPQSHEQCSIYLNGMKRASLIHTSSNAQSAKEASFISGSAAVTTESAAKLYDLPILQKDIQN SLNNTTRFLEISAGALDPDDPEKCSVVIIPRENRPGLLYGILGIFAQRGINLTRIESRPSKEGIGRYVFFIDFETDPGWQ ETITELKKITGVKELGCYRKKDYV
Specific function: L-phenylalanine biosynthesis. [C]
COG id: COG0077
COG function: function code E; Prephenate dehydratase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 prephenate dehydratase domain [H]
Homologues:
Organism=Escherichia coli, GI1788951, Length=277, Percent_Identity=26.7148014440433, Blast_Score=100, Evalue=1e-22, Organism=Saccharomyces cerevisiae, GI6324013, Length=294, Percent_Identity=26.530612244898, Blast_Score=78, Evalue=1e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR008242 - InterPro: IPR002701 - InterPro: IPR020822 - InterPro: IPR010957 - InterPro: IPR001086 - InterPro: IPR018528 [H]
Pfam domain/function: PF01842 ACT; PF01817 CM_2; PF00800 PDT [H]
EC number: =5.4.99.5; =4.2.1.51 [H]
Molecular weight: Translated: 29560; Mature: 29429
Theoretical pI: Translated: 5.22; Mature: 5.22
Prosite motif: PS00857 PREPHENATE_DEHYDR_1 ; PS00858 PREPHENATE_DEHYDR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLAVLGPKGTFSCELAEKIRNENEEIILFPTIRDVFTAVLEKNIRGIVPVENSEAGGVG CEEEEECCCCCEEHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCEEEEECCCCCCCCH ETLDGLLQTECRITAEYYMPIRHFFVSRYSPDEISVIYTHPQSHEQCSIYLNGMKRASLI HHHHHHHHHHHEEEHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEEECCCEEEEE HTSSNAQSAKEASFISGSAAVTTESAAKLYDLPILQKDIQNSLNNTTRFLEISAGALDPD EECCCCCHHHHHHHCCCCCEEEHHHHHHHHCCHHHHHHHHHHHCCCEEEEEEECCCCCCC DPEKCSVVIIPRENRPGLLYGILGIFAQRGINLTRIESRPSKEGIGRYVFFIDFETDPGW CCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEEEEECCCCCH QETITELKKITGVKELGCYRKKDYV HHHHHHHHHHCCHHHHCCCHHCCCC >Mature Secondary Structure TLAVLGPKGTFSCELAEKIRNENEEIILFPTIRDVFTAVLEKNIRGIVPVENSEAGGVG EEEEECCCCCEEHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCEEEEECCCCCCCCH ETLDGLLQTECRITAEYYMPIRHFFVSRYSPDEISVIYTHPQSHEQCSIYLNGMKRASLI HHHHHHHHHHHEEEHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEEECCCEEEEE HTSSNAQSAKEASFISGSAAVTTESAAKLYDLPILQKDIQNSLNNTTRFLEISAGALDPD EECCCCCHHHHHHHCCCCCEEEHHHHHHHHCCHHHHHHHHHHHCCCEEEEEEECCCCCCC DPEKCSVVIIPRENRPGLLYGILGIFAQRGINLTRIESRPSKEGIGRYVFFIDFETDPGW CCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEEEEECCCCCH QETITELKKITGVKELGCYRKKDYV HHHHHHHHHHCCHHHHCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]