Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
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Accession | NC_008825 |
Length | 4,044,195 |
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The map label for this gene is 124265674
Identifier: 124265674
GI number: 124265674
Start: 522870
End: 523700
Strand: Direct
Name: 124265674
Synonym: Mpe_A0481
Alternate gene names: NA
Gene position: 522870-523700 (Clockwise)
Preceding gene: 124265673
Following gene: 124265680
Centisome position: 12.93
GC content: 72.92
Gene sequence:
>831_bases GTGATCTCCCGTCGCCGGTTGCTGGGTGCCGCCGCGGCACTGGCGCCGCTGTCCGCGCCGCTCCGTGCCGAGGGCAGCGC GCTGGAACGCGTGCGGCGCAGCGGGAGGCTGGTGGTGGCGGTCTACCAGGACATGCCGCCGTTCAACCTGAACGGTCAGG GCGTCGATGTCGATCTGGCCGCGGTGCTGGCCGACAGCGTGGGCGTGCCGCTCAGCCTGTTGCCGATCCCGGCCGGCGAG AGCGTCGGCGACGACCTGCGCAACGCCGTCTGGCGCGGCCACTACCTCGGCTGGGGTCCGGCCGACGTGATGCTGCATGT GCCGATGGACCGCCCGCTGATCGAGGCCAATCCGCAGGTGGAGGTGTTCGGCGCCTACTACCGCGAGACGGTCATGCTGG CCTGGGACAGCGAGCGCGGTCCGACGCCCGAGACCATCGAGGCCCTGCGCGGGCAGAAGATCGCGGTGGCGGGCGTGTCC CTGCCGGGCTACCTGCTGGCCAGCGCCGACTCCGGCGCCCTCCGCGACACGCTCAGCACCCAGCACGCCGACGGCGTGGC AGCGGCGAAGACCCTGCTCTCCGGCGAGGTGGTGGCGGCCGCCGGCCTGGCCTCCGAACTGGAAGCGACGCTCGCCGGCC AGCCGCGCTACAAGATCGTGCCGCTGCCGCCGATCCCGCGAGCGCCGCGCAACGGCTGGGTGGTCGGCTGTGCCGTGAAG CGCGGCGCGACCGACCTGGCGCAGGTGATGCAGCGCCGCCTGATCGACCTCAACAACGGCACAGGCCTGCGCGATCTCTT CCGGCGCCACAACGTCGTCTGGCGTGGCTGA
Upstream 100 bases:
>100_bases GCAACGGTGCCGTCTACATGCCGCCGTTCGAGGGCGTGATGCAGCAGGAAGCGGTCTGGGCCATCAAGAGCTACCTCGAA ACCCGCCGCGAGAAGCCGCT
Downstream 100 bases:
>100_bases TCGCCGCCGACCGGCCTCGGCGCCGGTCAATAGCTGCGGCCCTTGCGGTATTGCGCATGGGCGCGCCGCGCCAGCGGGCT GACGGCGGCGATCGCCGCCT
Product: periplasmic binding protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 276; Mature: 276
Protein sequence:
>276_residues MISRRRLLGAAAALAPLSAPLRAEGSALERVRRSGRLVVAVYQDMPPFNLNGQGVDVDLAAVLADSVGVPLSLLPIPAGE SVGDDLRNAVWRGHYLGWGPADVMLHVPMDRPLIEANPQVEVFGAYYRETVMLAWDSERGPTPETIEALRGQKIAVAGVS LPGYLLASADSGALRDTLSTQHADGVAAAKTLLSGEVVAAAGLASELEATLAGQPRYKIVPLPPIPRAPRNGWVVGCAVK RGATDLAQVMQRRLIDLNNGTGLRDLFRRHNVVWRG
Sequences:
>Translated_276_residues MISRRRLLGAAAALAPLSAPLRAEGSALERVRRSGRLVVAVYQDMPPFNLNGQGVDVDLAAVLADSVGVPLSLLPIPAGE SVGDDLRNAVWRGHYLGWGPADVMLHVPMDRPLIEANPQVEVFGAYYRETVMLAWDSERGPTPETIEALRGQKIAVAGVS LPGYLLASADSGALRDTLSTQHADGVAAAKTLLSGEVVAAAGLASELEATLAGQPRYKIVPLPPIPRAPRNGWVVGCAVK RGATDLAQVMQRRLIDLNNGTGLRDLFRRHNVVWRG >Mature_276_residues MISRRRLLGAAAALAPLSAPLRAEGSALERVRRSGRLVVAVYQDMPPFNLNGQGVDVDLAAVLADSVGVPLSLLPIPAGE SVGDDLRNAVWRGHYLGWGPADVMLHVPMDRPLIEANPQVEVFGAYYRETVMLAWDSERGPTPETIEALRGQKIAVAGVS LPGYLLASADSGALRDTLSTQHADGVAAAKTLLSGEVVAAAGLASELEATLAGQPRYKIVPLPPIPRAPRNGWVVGCAVK RGATDLAQVMQRRLIDLNNGTGLRDLFRRHNVVWRG
Specific function: Unknown
COG id: COG0834
COG function: function code ET; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29394; Mature: 29394
Theoretical pI: Translated: 9.01; Mature: 9.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MISRRRLLGAAAALAPLSAPLRAEGSALERVRRSGRLVVAVYQDMPPFNLNGQGVDVDLA CCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHH AVLADSVGVPLSLLPIPAGESVGDDLRNAVWRGHYLGWGPADVMLHVPMDRPLIEANPQV HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCHHHEEEECCCCCCEECCCCCE EVFGAYYRETVMLAWDSERGPTPETIEALRGQKIAVAGVSLPGYLLASADSGALRDTLST EEEEEEEEEEEEEEECCCCCCCHHHHHHHCCCEEEEEECCCCCEEEECCCCCHHHHHHHH QHADGVAAAKTLLSGEVVAAAGLASELEATLAGQPRYKIVPLPPIPRAPRNGWVVGCAVK HCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEEEEEEC RGATDLAQVMQRRLIDLNNGTGLRDLFRRHNVVWRG CCCHHHHHHHHHHHEECCCCCCHHHHHHHCCCCCCC >Mature Secondary Structure MISRRRLLGAAAALAPLSAPLRAEGSALERVRRSGRLVVAVYQDMPPFNLNGQGVDVDLA CCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHH AVLADSVGVPLSLLPIPAGESVGDDLRNAVWRGHYLGWGPADVMLHVPMDRPLIEANPQV HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCHHHEEEECCCCCCEECCCCCE EVFGAYYRETVMLAWDSERGPTPETIEALRGQKIAVAGVSLPGYLLASADSGALRDTLST EEEEEEEEEEEEEEECCCCCCCHHHHHHHCCCEEEEEECCCCCEEEECCCCCHHHHHHHH QHADGVAAAKTLLSGEVVAAAGLASELEATLAGQPRYKIVPLPPIPRAPRNGWVVGCAVK HCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEEEEEEC RGATDLAQVMQRRLIDLNNGTGLRDLFRRHNVVWRG CCCHHHHHHHHHHHEECCCCCCHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA