Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
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Accession | NC_008825 |
Length | 4,044,195 |
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The map label for this gene is dat [H]
Identifier: 124265505
GI number: 124265505
Start: 337608
End: 338519
Strand: Direct
Name: dat [H]
Synonym: Mpe_A0312
Alternate gene names: 124265505
Gene position: 337608-338519 (Clockwise)
Preceding gene: 124265504
Following gene: 124265506
Centisome position: 8.35
GC content: 69.96
Gene sequence:
>912_bases ATGAACCCGCTGCCCAGCGCCATCCCCGCGGCGAGCGCCGACTCGCTGTGCTACCTGAACGGCGACTACACCCGCCTGGC GGACGCTCGCGTCAGCGTGCTCGACCGCGGCTTCATGTTCGGCGACGGCGTCTACGAGGTCCTGCCCGTCTACGATCGTC GGCTGTTCCGCTTCGACGAGCACATGGCGCGCCTGGAGCGCAGCCTCGCCAAGGTGCGCATCACCGCGCCGCTGACCCGC GAGGACTGGCTGGCGCGCATGCGCCGGCTGGTCGCGGCCCAGCACGAGCACAGCGGGGCGACCGACCAGCTCGTGTACCT GCAGGTCACGCGCGGCGTGGCGCTGCGCGAGCACACGATGCCGACCGACATCGAGCCCACGGTCTTCATGATGTGCAGTC CGGCGAAGCCGCCGACGCCCGAGCAGCGCCATGCCGGCGTGGCCTGCATCAGCGCGCGCGACTTCCGCTGGGAGCGCGGC GACATCAAGAGCATTTCGCTGCTCGGCAACGTGCTGGCGCGGCAGATGTCGGCCGACAAGGGCGCCGTCGAGACCCTCCT GTTTCGCGACGGCTTCCTGACCGAGGCAGCGGCGTCCAACGTGTGGATGGTGAAGGAAGGCGCACTGATCGGCCCGCCGA AGAGCGAACTGCTGCTCGAAGGCGTGCGGGTCGACCTGCTGGCCGAGCTGTGCGAGGAGTGCGGCATCGGCTACAGCCTG CGGCCGGTCAGCGAGGGCGAGGTCTTCTCGGCCGACGAACTGCTGCTGAGTTCGGCGATGAAGGAAGTGCTGGCGGTCAC CCGTCTCGATGGCGAACTGGTCGGGCACGGCGCGTTGCGCGGCAAGCCCGGGCCGGTGTACGCCCGGCTCTACGAGGCCT ACCAGCGGGCCAAGCCCGCCCAGTCGATCTGA
Upstream 100 bases:
>100_bases GTGGGATTCGCTGCGGCTGTGGATCCAGTGATGCCGGTGTCGATTCGTACCGGGTGAAACGCTGCTTGCCCGTTGCCGCC GACGGGCCTACGCTGCGGGC
Downstream 100 bases:
>100_bases GCCGCGGCGGCCGCGCGGATTTCGCGGGTGCGGGACAATCCGGCCATCGCGGGCGCCGCAGCGGCGTGCCCGCCCGATGC AGCGGCAGCAGACCATGACG
Product: branched subunit Amino acid: 2-keto-4-methylthiobutyrate aminotransferase
Products: NA
Alternate protein names: D-amino acid aminotransferase; D-amino acid transaminase; DAAT; D-aspartate aminotransferase [H]
Number of amino acids: Translated: 303; Mature: 303
Protein sequence:
>303_residues MNPLPSAIPAASADSLCYLNGDYTRLADARVSVLDRGFMFGDGVYEVLPVYDRRLFRFDEHMARLERSLAKVRITAPLTR EDWLARMRRLVAAQHEHSGATDQLVYLQVTRGVALREHTMPTDIEPTVFMMCSPAKPPTPEQRHAGVACISARDFRWERG DIKSISLLGNVLARQMSADKGAVETLLFRDGFLTEAAASNVWMVKEGALIGPPKSELLLEGVRVDLLAELCEECGIGYSL RPVSEGEVFSADELLLSSAMKEVLAVTRLDGELVGHGALRGKPGPVYARLYEAYQRAKPAQSI
Sequences:
>Translated_303_residues MNPLPSAIPAASADSLCYLNGDYTRLADARVSVLDRGFMFGDGVYEVLPVYDRRLFRFDEHMARLERSLAKVRITAPLTR EDWLARMRRLVAAQHEHSGATDQLVYLQVTRGVALREHTMPTDIEPTVFMMCSPAKPPTPEQRHAGVACISARDFRWERG DIKSISLLGNVLARQMSADKGAVETLLFRDGFLTEAAASNVWMVKEGALIGPPKSELLLEGVRVDLLAELCEECGIGYSL RPVSEGEVFSADELLLSSAMKEVLAVTRLDGELVGHGALRGKPGPVYARLYEAYQRAKPAQSI >Mature_303_residues MNPLPSAIPAASADSLCYLNGDYTRLADARVSVLDRGFMFGDGVYEVLPVYDRRLFRFDEHMARLERSLAKVRITAPLTR EDWLARMRRLVAAQHEHSGATDQLVYLQVTRGVALREHTMPTDIEPTVFMMCSPAKPPTPEQRHAGVACISARDFRWERG DIKSISLLGNVLARQMSADKGAVETLLFRDGFLTEAAASNVWMVKEGALIGPPKSELLLEGVRVDLLAELCEECGIGYSL RPVSEGEVFSADELLLSSAMKEVLAVTRLDGELVGHGALRGKPGPVYARLYEAYQRAKPAQSI
Specific function: Acts on the D-isomers of alanine, leucine, aspartate, glutamate, aminobutyrate, norvaline and asparagine. The enzyme transfers an amino group from a substrate D-amino acid to the pyridoxal phosphate cofactor to form pyridoxamine and an alpha- keto acid in
COG id: COG0115
COG function: function code EH; Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family [H]
Homologues:
Organism=Escherichia coli, GI48994963, Length=294, Percent_Identity=26.530612244898, Blast_Score=84, Evalue=1e-17,
Paralogues:
None
Copy number: 2342 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 11,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001544 - InterPro: IPR018300 - InterPro: IPR005784 [H]
Pfam domain/function: PF01063 Aminotran_4 [H]
EC number: =2.6.1.21 [H]
Molecular weight: Translated: 33446; Mature: 33446
Theoretical pI: Translated: 6.26; Mature: 6.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNPLPSAIPAASADSLCYLNGDYTRLADARVSVLDRGFMFGDGVYEVLPVYDRRLFRFDE CCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH HMARLERSLAKVRITAPLTREDWLARMRRLVAAQHEHSGATDQLVYLQVTRGVALREHTM HHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHCCC PTDIEPTVFMMCSPAKPPTPEQRHAGVACISARDFRWERGDIKSISLLGNVLARQMSADK CCCCCCEEEEEECCCCCCCCCHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCC GAVETLLFRDGFLTEAAASNVWMVKEGALIGPPKSELLLEGVRVDLLAELCEECGIGYSL HHHHHHHHCCCCHHHHHCCCEEEEECCCEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEE RPVSEGEVFSADELLLSSAMKEVLAVTRLDGELVGHGALRGKPGPVYARLYEAYQRAKPA CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHEECCCCCCCCCHHHHHHHHHHHHCCCC QSI CCC >Mature Secondary Structure MNPLPSAIPAASADSLCYLNGDYTRLADARVSVLDRGFMFGDGVYEVLPVYDRRLFRFDE CCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH HMARLERSLAKVRITAPLTREDWLARMRRLVAAQHEHSGATDQLVYLQVTRGVALREHTM HHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHCCC PTDIEPTVFMMCSPAKPPTPEQRHAGVACISARDFRWERGDIKSISLLGNVLARQMSADK CCCCCCEEEEEECCCCCCCCCHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCC GAVETLLFRDGFLTEAAASNVWMVKEGALIGPPKSELLLEGVRVDLLAELCEECGIGYSL HHHHHHHHCCCCHHHHHCCCEEEEECCCEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEE RPVSEGEVFSADELLLSSAMKEVLAVTRLDGELVGHGALRGKPGPVYARLYEAYQRAKPA CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHEECCCCCCCCCHHHHHHHHHHHHCCCC QSI CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9003455 [H]