Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
---|---|
Accession | NC_008825 |
Length | 4,044,195 |
Click here to switch to the map view.
The map label for this gene is lemA [H]
Identifier: 124265338
GI number: 124265338
Start: 151586
End: 152191
Strand: Direct
Name: lemA [H]
Synonym: Mpe_A0145
Alternate gene names: 124265338
Gene position: 151586-152191 (Clockwise)
Preceding gene: 124265336
Following gene: 124265339
Centisome position: 3.75
GC content: 67.16
Gene sequence:
>606_bases ATGCTCCGACGCCTTCTCGCCGCCCTGATGCTGCTCGCCACGCTGGCGCTCGGCGGCTGCGGCTACAACGACTTCCAGCG CCTCGACGAGGCGACCAAGAGCGCCTGGGCCGAGGTGCTGAACCAGTACCAGCGCCGCGCCGACCTGATCCCCAACGTGG TGGCCACCGTCAAGGGCGAGGCCAATTTCGAGCAGGAGACGCTGACCAAGGTGGTCGAGGCGCGCGCCAAGGCCACCAGC ATCCAGGCCACGCCGGAGCTGATCAACAACCCCGAGGCCTTCCAGAAGTTCCAGGCCGCGCAGGGCGAGCTGAGCGGCGC GCTGTCGCGTCTGCTGGTGGTGACCGAGAACTACCCGAACCTGAAGGCCAACCAGGGCTTCCAGGACCTGCGCGTGCAGC TCGAGGGCACCGAGAACCGCATCACCGTGGCGCGCAACCGCTACATCAAGGCGGTGCAGGACTACAACGTGCTCGCGCGC AGCTTTCCCAGCAACCTGACCGCGATGGTGTTCGGCTACGCGGCCAAGCCCAACTTCACGGTGCAGAACGAGGCGCAGAT CTCGGCGCCGCCGGCGGTGAGTTTCGAGAAGCCGGCCTCGAAGTGA
Upstream 100 bases:
>100_bases AAGCGCCGCTTGAACCCGGCGCAGCCGACGGCATCTGCGCAGCACCGGTGCCGAAGACTGCCGCGCGCCGCCCCGAGTTC GCACAGAAAGGACCACCCCC
Downstream 100 bases:
>100_bases GACCTTGATGCGACACGGCTGGCGGCGCTGGCTCGCAAGCCTGGCGCTGGCGCTGCTGGTGGGGCCGTGGAGCGCGAGCA GCGCCCAGGACCTGCGGCCG
Product: LemA protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 201; Mature: 201
Protein sequence:
>201_residues MLRRLLAALMLLATLALGGCGYNDFQRLDEATKSAWAEVLNQYQRRADLIPNVVATVKGEANFEQETLTKVVEARAKATS IQATPELINNPEAFQKFQAAQGELSGALSRLLVVTENYPNLKANQGFQDLRVQLEGTENRITVARNRYIKAVQDYNVLAR SFPSNLTAMVFGYAAKPNFTVQNEAQISAPPAVSFEKPASK
Sequences:
>Translated_201_residues MLRRLLAALMLLATLALGGCGYNDFQRLDEATKSAWAEVLNQYQRRADLIPNVVATVKGEANFEQETLTKVVEARAKATS IQATPELINNPEAFQKFQAAQGELSGALSRLLVVTENYPNLKANQGFQDLRVQLEGTENRITVARNRYIKAVQDYNVLAR SFPSNLTAMVFGYAAKPNFTVQNEAQISAPPAVSFEKPASK >Mature_201_residues MLRRLLAALMLLATLALGGCGYNDFQRLDEATKSAWAEVLNQYQRRADLIPNVVATVKGEANFEQETLTKVVEARAKATS IQATPELINNPEAFQKFQAAQGELSGALSRLLVVTENYPNLKANQGFQDLRVQLEGTENRITVARNRYIKAVQDYNVLAR SFPSNLTAMVFGYAAKPNFTVQNEAQISAPPAVSFEKPASK
Specific function: Unknown
COG id: COG1704
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the LemA family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007156 [H]
Pfam domain/function: PF04011 LemA [H]
EC number: NA
Molecular weight: Translated: 22150; Mature: 22150
Theoretical pI: Translated: 9.36; Mature: 9.36
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRRLLAALMLLATLALGGCGYNDFQRLDEATKSAWAEVLNQYQRRADLIPNVVATVKGE CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCC ANFEQETLTKVVEARAKATSIQATPELINNPEAFQKFQAAQGELSGALSRLLVVTENYPN CCCCHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCC LKANQGFQDLRVQLEGTENRITVARNRYIKAVQDYNVLARSFPSNLTAMVFGYAAKPNFT CCCCCCHHHHEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHEECCCCCCE VQNEAQISAPPAVSFEKPASK ECCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MLRRLLAALMLLATLALGGCGYNDFQRLDEATKSAWAEVLNQYQRRADLIPNVVATVKGE CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCC ANFEQETLTKVVEARAKATSIQATPELINNPEAFQKFQAAQGELSGALSRLLVVTENYPN CCCCHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCC LKANQGFQDLRVQLEGTENRITVARNRYIKAVQDYNVLARSFPSNLTAMVFGYAAKPNFT CCCCCCHHHHEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHEECCCCCCE VQNEAQISAPPAVSFEKPASK ECCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11860552 [H]