Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
---|---|
Accession | NC_008825 |
Length | 4,044,195 |
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The map label for this gene is hisJ [H]
Identifier: 124265324
GI number: 124265324
Start: 135211
End: 136068
Strand: Direct
Name: hisJ [H]
Synonym: Mpe_A0131
Alternate gene names: 124265324
Gene position: 135211-136068 (Clockwise)
Preceding gene: 124265323
Following gene: 124265325
Centisome position: 3.34
GC content: 66.08
Gene sequence:
>858_bases ATGAAGCTCACGACCCGCCAGTTTCTGAAGACCGCCGGCCTGTTCGGTGCCGGCCTGCTGCTCGCCGCCTGCGGCAAGAA GGAAGAGCCGGCGCCCGCCGCCGCCCCCGCTTCCGCGCCCGCGCCGGTGGCTTCCGCTCCGGCGCCCGCGCCCGCCAAGG TCTACGTCGTCGGCACCGATGCCGCCTACGCCCCGTTCGAGTTCCAGAACGAGAAGGGCGAGATCGTCGGCTTCAGCATC GACCTGCTCCAGGCCGTGGCCGCCAAGGGCGGCTTCGAGGTGAAGTTCGTCAACACGCCGTGGGAAGGCATCTTCAACGC GCTGCAGCAGGGTGACCGCGACCTGCTGATCTCGTCGATCACCATCACCGACGAGCGCAAGCAGACGATGGACTTCTCCA ACCCCTACTTCGACGCCTTCCAGCTGATCGCGGTGAAGGCCACCTCCAAGGTCGCGAAGTTCGACGACCTGAAGAAGCTC AAGGTCGGCGTGCAGACCGGCACCACCGGCGACGAGGTCGTGACCAAGCTGCAGGGCAAGAACAGCGCCAACGTCAAGCG CTTCGAGTCGACGCCGCTGGCGTTGAAGGAGCTCGAGGCGGGCGGTGTCGATGCCGTCGTGGCCGACAACGGCGTGATCA TCAACTACGTCACCAACAACGCGGGCGCCAACTTCAAGACCGTCAGCGACAGCGCCTTCGCGCCCGAGCAGTACGGCATC GCCGTCAAGAAGGGCAACGCCGAACTGCTGGAGAAGGTGAACAAGGGCATCGCGGCCATCAAGGCCGACGGCAGCTACGA CCAGGTCTACGCCAAGACCTTCGGTGCAGCCGCTCCCGCGGCGGCGGCTTCCAAGTAA
Upstream 100 bases:
>100_bases AAAGCGGCCTCCGGGCCGCTTTTTTGCATCAACAATCCGGTGACAATCGGTCACCGCCGATGTGTCGCCATCGATTCCGG AGCCCCCACGAGGATCCCGC
Downstream 100 bases:
>100_bases GCAGCGGCTTCAGGACCCCGAGGATCTCCCATGGACTTTCGCTGGGAGATCCTGGCCGGCTACGGACCGCTGTTCCTGGC CGGCGTCCTGATGACGATCA
Product: glutamine transport system substrate-binding protein
Products: NA
Alternate protein names: HBP [H]
Number of amino acids: Translated: 285; Mature: 285
Protein sequence:
>285_residues MKLTTRQFLKTAGLFGAGLLLAACGKKEEPAPAAAPASAPAPVASAPAPAPAKVYVVGTDAAYAPFEFQNEKGEIVGFSI DLLQAVAAKGGFEVKFVNTPWEGIFNALQQGDRDLLISSITITDERKQTMDFSNPYFDAFQLIAVKATSKVAKFDDLKKL KVGVQTGTTGDEVVTKLQGKNSANVKRFESTPLALKELEAGGVDAVVADNGVIINYVTNNAGANFKTVSDSAFAPEQYGI AVKKGNAELLEKVNKGIAAIKADGSYDQVYAKTFGAAAPAAAASK
Sequences:
>Translated_285_residues MKLTTRQFLKTAGLFGAGLLLAACGKKEEPAPAAAPASAPAPVASAPAPAPAKVYVVGTDAAYAPFEFQNEKGEIVGFSI DLLQAVAAKGGFEVKFVNTPWEGIFNALQQGDRDLLISSITITDERKQTMDFSNPYFDAFQLIAVKATSKVAKFDDLKKL KVGVQTGTTGDEVVTKLQGKNSANVKRFESTPLALKELEAGGVDAVVADNGVIINYVTNNAGANFKTVSDSAFAPEQYGI AVKKGNAELLEKVNKGIAAIKADGSYDQVYAKTFGAAAPAAAASK >Mature_285_residues MKLTTRQFLKTAGLFGAGLLLAACGKKEEPAPAAAPASAPAPVASAPAPAPAKVYVVGTDAAYAPFEFQNEKGEIVGFSI DLLQAVAAKGGFEVKFVNTPWEGIFNALQQGDRDLLISSITITDERKQTMDFSNPYFDAFQLIAVKATSKVAKFDDLKKL KVGVQTGTTGDEVVTKLQGKNSANVKRFESTPLALKELEAGGVDAVVADNGVIINYVTNNAGANFKTVSDSAFAPEQYGI AVKKGNAELLEKVNKGIAAIKADGSYDQVYAKTFGAAAPAAAASK
Specific function: Component of the high-affinity histidine permease, a binding-protein-dependent transport system. The other components are proteins hisQ, hisM, and hisP [H]
COG id: COG0834
COG function: function code ET; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 3 family [H]
Homologues:
Organism=Escherichia coli, GI1788228, Length=225, Percent_Identity=34.2222222222222, Blast_Score=129, Evalue=2e-31, Organism=Escherichia coli, GI1787031, Length=230, Percent_Identity=35.6521739130435, Blast_Score=124, Evalue=7e-30, Organism=Escherichia coli, GI1787085, Length=220, Percent_Identity=33.1818181818182, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI1787088, Length=218, Percent_Identity=31.1926605504587, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI1788649, Length=237, Percent_Identity=30.379746835443, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1788648, Length=224, Percent_Identity=28.5714285714286, Blast_Score=100, Evalue=1e-22,
Paralogues:
None
Copy number: 1920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1060 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015683 - InterPro: IPR001638 - InterPro: IPR018313 [H]
Pfam domain/function: PF00497 SBP_bac_3 [H]
EC number: NA
Molecular weight: Translated: 29771; Mature: 29771
Theoretical pI: Translated: 8.36; Mature: 8.36
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLTTRQFLKTAGLFGAGLLLAACGKKEEPAPAAAPASAPAPVASAPAPAPAKVYVVGTD CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC AAYAPFEFQNEKGEIVGFSIDLLQAVAAKGGFEVKFVNTPWEGIFNALQQGDRDLLISSI CCCCCEEEECCCCCEEEEHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEEEEEE TITDERKQTMDFSNPYFDAFQLIAVKATSKVAKFDDLKKLKVGVQTGTTGDEVVTKLQGK EEECCHHHHCCCCCCHHHHEEEEEEHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHCCC NSANVKRFESTPLALKELEAGGVDAVVADNGVIINYVTNNAGANFKTVSDSAFAPEQYGI CCCCCEEECCCCHHHHHHCCCCCEEEEECCCEEEEEEECCCCCCEEECCCCCCCCHHHCE AVKKGNAELLEKVNKGIAAIKADGSYDQVYAKTFGAAAPAAAASK EEECCCHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MKLTTRQFLKTAGLFGAGLLLAACGKKEEPAPAAAPASAPAPVASAPAPAPAKVYVVGTD CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC AAYAPFEFQNEKGEIVGFSIDLLQAVAAKGGFEVKFVNTPWEGIFNALQQGDRDLLISSI CCCCCEEEECCCCCEEEEHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEEEEEE TITDERKQTMDFSNPYFDAFQLIAVKATSKVAKFDDLKKLKVGVQTGTTGDEVVTKLQGK EEECCHHHHCCCCCCHHHHEEEEEEHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHCCC NSANVKRFESTPLALKELEAGGVDAVVADNGVIINYVTNNAGANFKTVSDSAFAPEQYGI CCCCCEEECCCCHHHHHHCCCCCEEEEECCCEEEEEEECCCCCCEEECCCCCCCCHHHCE AVKKGNAELLEKVNKGIAAIKADGSYDQVYAKTFGAAAPAAAASK EEECCCHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 1448614 [H]