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The map label for this gene is ydcN [C]

Identifier: 124265218

GI number: 124265218

Start: 27645

End: 27890

Strand: Reverse

Name: ydcN [C]

Synonym: Mpe_A0025

Alternate gene names: 124265218

Gene position: 27890-27645 (Counterclockwise)

Preceding gene: 124265219

Following gene: 124265217

Centisome position: 0.69

GC content: 72.36

Gene sequence:

>246_bases
ATGAGCTCGCTGAGCGCCCATTTCGGTCGCGTCGTGCGGCAGCACCGTGAGCAGCGGCGCTGGTCGCAGGAGCTGCTGGC
GCATCGCGCGGAGATCAACCGCAGCTACCTCGGCGAGGTCGAGCGTGGCGACGCGGTGCCCTCGCTCGCGACGATGAGCA
AGCTGGCCACGGCGCTCGACGTGCGGCTGTCCAGCCTGCTGGCGCGCTGCGAGCAGGAGCCGCAGGCCGAAGGCGCCGCC
GGCTAG

Upstream 100 bases:

>100_bases
CCACGATCGGCGGCAACGTGTGGCTGACGCGCAGCGTGCCGCCGGGCAGCAACGTGACCCAGGCCAACGCGCATAACGAA
GTGTCGAGCGAGGGCCGCGC

Downstream 100 bases:

>100_bases
TCGCGGAAGGTCCCTGACGTGGCGGCCTTGGTGGCTATAGCCGGTTGATGTTGCGCCGCAACGCGGCGATATTCGTTCGG
CGCATTTTCTTATTACCAAT

Product: putative DNA-binding protein

Products: NA

Alternate protein names: Helix-Turn-Helix Domain-Containing Protein; Helix-Turn-Helix Domain Protein; Helix-Turn-Helix Protein; SgrAlc Control Protein; Transcriptional Regulator XRE Family

Number of amino acids: Translated: 81; Mature: 80

Protein sequence:

>81_residues
MSSLSAHFGRVVRQHREQRRWSQELLAHRAEINRSYLGEVERGDAVPSLATMSKLATALDVRLSSLLARCEQEPQAEGAA
G

Sequences:

>Translated_81_residues
MSSLSAHFGRVVRQHREQRRWSQELLAHRAEINRSYLGEVERGDAVPSLATMSKLATALDVRLSSLLARCEQEPQAEGAA
G
>Mature_80_residues
SSLSAHFGRVVRQHREQRRWSQELLAHRAEINRSYLGEVERGDAVPSLATMSKLATALDVRLSSLLARCEQEPQAEGAAG

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 8987; Mature: 8856

Theoretical pI: Translated: 8.54; Mature: 8.54

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSLSAHFGRVVRQHREQRRWSQELLAHRAEINRSYLGEVERGDAVPSLATMSKLATALD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
VRLSSLLARCEQEPQAEGAAG
HHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SSLSAHFGRVVRQHREQRRWSQELLAHRAEINRSYLGEVERGDAVPSLATMSKLATALD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
VRLSSLLARCEQEPQAEGAAG
HHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA