Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
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Accession | NC_008825 |
Length | 4,044,195 |
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The map label for this gene is 124265200
Identifier: 124265200
GI number: 124265200
Start: 8934
End: 10169
Strand: Direct
Name: 124265200
Synonym: Mpe_A0007
Alternate gene names: NA
Gene position: 8934-10169 (Clockwise)
Preceding gene: 124265199
Following gene: 124265201
Centisome position: 0.22
GC content: 62.22
Gene sequence:
>1236_bases ATGGCCACCTTGTCCACCGTGCCACGCATCCACTACCTGCGGGTGCAGAACTTCCGCGCTTTGCGGAACATCGAGTTGAA GAACATCACGCCATTGACAGTGCTGCTGGGACCCAATGGCAGCGGCAAGACTACGCTGTTCGACGTTTTCAACTTTCTGT CTGAGTGCTTCCAGGGTGGCCTGCGGCAGGCCTGGGACAAGCGAGGCCGTGCGAAGGAACTGAAGACCCGTGGCGCGGAC GGACCTGTGGTTATCGAGATCAAGTACCGCGAAAGCAAGGCGACGCCCTTGATCACCTACCACCTATCGATCGACGAAGG CCCCAAGGGCCCGGTGGTGGCTGAAGAGTGGTTGGCCTGGACCCGCGGCACTCAAGGCCGACCTTGGCGCTTCCTGGACT ACAGACTCGGCAAGGGGGTGGTAGTAGGTGGCGAGTTACCCGACGAAAAGGACGAGCGGCTCGACGTGCCGCTGCGCAGC GCCGAACTGCTGGCGGTGAACACTCTGGGTCAGATCGCGCAGCACCCCCGCGTGGCGGCATTGCGCGATTTCATCACCGA CTGGTACGTGTCCTACCTGTCTGTGGACAACACTCGAACTCAGCCCGAGGCCGGGCCGATGGAGCAGTTGTCGAAGACCG GCGACAACCTGCCCAATGTCATCCAGTATCTTCAGGAGACCCACCCGGAGCAGTTGCAGAGCATCACTGAGGTGCTGCGG CGGCGCATTCCGCGGCTGGAGCGCATCGACGCGACGCCCATGCCGGACGGCCGGCTGCTGCTGGAAGTGAAAGATGCGCC GTTCGACAAGCCGGTGTTGTCGAAGTTTGCATCCGACGGCACGCTCAAGATGCTGGCCTACCTGACTGTTCTGTACGACC CCGAGCCACCGCGCTTCATCGGCATCGAGGAGCCCGAGAACTTTCTGCACCCGCGGCTGCTGCCTGAACTGGGCGAGGAA TGCCGCCATGCGTCCGAACGCACACAGTTGCTGGTGACTACGCATTCGCCCTTCTTCCTGAACAGCTGCAGGCCCGATGA AGTACGCATCCTGTTCCGAGACGAACAGGGTCACACGCAGGTTCGTACTGCAGCTGACATCGAGGGCATCCCGGAGTTCG TGGCGGCTGGCGCTTCGCTCGGTCACCTGTGGATCGAAGGCCAGTTCGGCATGAGTGACCCTTTGCGCAACCAGGGGGCG CCTTGGACGATAGAAGGGGCGCGGCGTGGCCATTGA
Upstream 100 bases:
>100_bases ATCTCCGGCCAACTCCGCCTGCCTGACGCTGTGGCGCTGGCCGCCTGAGCTCTTGCCGCCATCGGGCACACTTCCGGCAC TTCAGAAAGCTGCTCCCACC
Downstream 100 bases:
>100_bases GGTGCTGCACGTGTTGGTGGAGGAGCCGTCTATGGAGGTGGCGCTGCAGCACCTGCTTCCGCGCCTGTTGCGCGAGGGCA TTCGCGCTGAATTGCGCCAA
Product: ATPase
Products: NA
Alternate protein names: SMC Domain-Containing Protein; ATPase; ATPase-Like Protein; RecF/RecN/SMC N Terminal Domain; RecF Protein; Recf Like Family Protein; DNA Replication And Repair Protein RecF; RecF/RecN/SMC Domain-Containing Protein; ATPase RecF-Like Protein
Number of amino acids: Translated: 411; Mature: 410
Protein sequence:
>411_residues MATLSTVPRIHYLRVQNFRALRNIELKNITPLTVLLGPNGSGKTTLFDVFNFLSECFQGGLRQAWDKRGRAKELKTRGAD GPVVIEIKYRESKATPLITYHLSIDEGPKGPVVAEEWLAWTRGTQGRPWRFLDYRLGKGVVVGGELPDEKDERLDVPLRS AELLAVNTLGQIAQHPRVAALRDFITDWYVSYLSVDNTRTQPEAGPMEQLSKTGDNLPNVIQYLQETHPEQLQSITEVLR RRIPRLERIDATPMPDGRLLLEVKDAPFDKPVLSKFASDGTLKMLAYLTVLYDPEPPRFIGIEEPENFLHPRLLPELGEE CRHASERTQLLVTTHSPFFLNSCRPDEVRILFRDEQGHTQVRTAADIEGIPEFVAAGASLGHLWIEGQFGMSDPLRNQGA PWTIEGARRGH
Sequences:
>Translated_411_residues MATLSTVPRIHYLRVQNFRALRNIELKNITPLTVLLGPNGSGKTTLFDVFNFLSECFQGGLRQAWDKRGRAKELKTRGAD GPVVIEIKYRESKATPLITYHLSIDEGPKGPVVAEEWLAWTRGTQGRPWRFLDYRLGKGVVVGGELPDEKDERLDVPLRS AELLAVNTLGQIAQHPRVAALRDFITDWYVSYLSVDNTRTQPEAGPMEQLSKTGDNLPNVIQYLQETHPEQLQSITEVLR RRIPRLERIDATPMPDGRLLLEVKDAPFDKPVLSKFASDGTLKMLAYLTVLYDPEPPRFIGIEEPENFLHPRLLPELGEE CRHASERTQLLVTTHSPFFLNSCRPDEVRILFRDEQGHTQVRTAADIEGIPEFVAAGASLGHLWIEGQFGMSDPLRNQGA PWTIEGARRGH >Mature_410_residues ATLSTVPRIHYLRVQNFRALRNIELKNITPLTVLLGPNGSGKTTLFDVFNFLSECFQGGLRQAWDKRGRAKELKTRGADG PVVIEIKYRESKATPLITYHLSIDEGPKGPVVAEEWLAWTRGTQGRPWRFLDYRLGKGVVVGGELPDEKDERLDVPLRSA ELLAVNTLGQIAQHPRVAALRDFITDWYVSYLSVDNTRTQPEAGPMEQLSKTGDNLPNVIQYLQETHPEQLQSITEVLRR RIPRLERIDATPMPDGRLLLEVKDAPFDKPVLSKFASDGTLKMLAYLTVLYDPEPPRFIGIEEPENFLHPRLLPELGEEC RHASERTQLLVTTHSPFFLNSCRPDEVRILFRDEQGHTQVRTAADIEGIPEFVAAGASLGHLWIEGQFGMSDPLRNQGAP WTIEGARRGH
Specific function: Unknown
COG id: COG4637
COG function: function code R; Predicted ATPase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46393; Mature: 46261
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATLSTVPRIHYLRVQNFRALRNIELKNITPLTVLLGPNGSGKTTLFDVFNFLSECFQGG CCCCCCCCCEEEEEHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHH LRQAWDKRGRAKELKTRGADGPVVIEIKYRESKATPLITYHLSIDEGPKGPVVAEEWLAW HHHHHHHCCCHHHHHHCCCCCCEEEEEEECCCCCCEEEEEEEEECCCCCCCCHHHHHHHH TRGTQGRPWRFLDYRLGKGVVVGGELPDEKDERLDVPLRSAELLAVNTLGQIAQHPRVAA HCCCCCCCEEEEEEECCCCEEECCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHCCHHHH LRDFITDWYVSYLSVDNTRTQPEAGPMEQLSKTGDNLPNVIQYLQETHPEQLQSITEVLR HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHH RRIPRLERIDATPMPDGRLLLEVKDAPFDKPVLSKFASDGTLKMLAYLTVLYDPEPPRFI HHCCHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHCCCCHHHHHHHHHHEECCCCCCEE GIEEPENFLHPRLLPELGEECRHASERTQLLVTTHSPFFLNSCRPDEVRILFRDEQGHTQ ECCCCHHHCCCHHHHHHHHHHHHHHCCCEEEEEECCCEEECCCCCCEEEEEEECCCCCCE VRTAADIEGIPEFVAAGASLGHLWIEGQFGMSDPLRNQGAPWTIEGARRGH EHHHHHHCCCHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCEEECCCCCCC >Mature Secondary Structure ATLSTVPRIHYLRVQNFRALRNIELKNITPLTVLLGPNGSGKTTLFDVFNFLSECFQGG CCCCCCCCEEEEEHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHH LRQAWDKRGRAKELKTRGADGPVVIEIKYRESKATPLITYHLSIDEGPKGPVVAEEWLAW HHHHHHHCCCHHHHHHCCCCCCEEEEEEECCCCCCEEEEEEEEECCCCCCCCHHHHHHHH TRGTQGRPWRFLDYRLGKGVVVGGELPDEKDERLDVPLRSAELLAVNTLGQIAQHPRVAA HCCCCCCCEEEEEEECCCCEEECCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHCCHHHH LRDFITDWYVSYLSVDNTRTQPEAGPMEQLSKTGDNLPNVIQYLQETHPEQLQSITEVLR HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHH RRIPRLERIDATPMPDGRLLLEVKDAPFDKPVLSKFASDGTLKMLAYLTVLYDPEPPRFI HHCCHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHCCCCHHHHHHHHHHEECCCCCCEE GIEEPENFLHPRLLPELGEECRHASERTQLLVTTHSPFFLNSCRPDEVRILFRDEQGHTQ ECCCCHHHCCCHHHHHHHHHHHHHHCCCEEEEEECCCEEECCCCCCEEEEEEECCCCCCE VRTAADIEGIPEFVAAGASLGHLWIEGQFGMSDPLRNQGAPWTIEGARRGH EHHHHHHCCCHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA