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The map label for this gene is yqgF [C]

Identifier: 124025538

GI number: 124025538

Start: 763671

End: 764105

Strand: Reverse

Name: yqgF [C]

Synonym: NATL1_08311

Alternate gene names: 124025538

Gene position: 764105-763671 (Counterclockwise)

Preceding gene: 124025539

Following gene: 124025537

Centisome position: 40.98

GC content: 34.48

Gene sequence:

>435_bases
ATGATTCAGCCAAAACCCTGTTCAGTTTTGAGTCTTGATATTGGAGATAAAAGGATTGGTATTGCAGGTTGTGATCCACT
TGGAATATCAATAACTCATCTCCCCGCAATTTTTAGAGATAGCTTTGAAAAAGATCTAAAAGAATTCGAGAAAATATGTT
TTGACCGAAGAGTTGAAGGTCTCATTTGTGGTAATCCTCTTGATATGAATGGCATGGAAACTAAACAATCTATTCGATGT
AAAAAATATGGGATTAAATTAGCTAAATGTTTAAAACTTCCTTTGGCTTTTATCAATGAACATTGTTCAACCTTAGAGGC
TAAAGAAAAGTTCTCTTTAAAAAATGACAAGACTGGAAGACTAGATAGTGCAGCTGCCGCTATACTTTTACAACAATGGC
TTATTGAGGGACCTGATCTGGATGACTCAAATTAA

Upstream 100 bases:

>100_bases
ATAAATTAAAATCTATCGAAACTGAACTATTAACTAATCTTGTAGGCAATTTACAACAACAACCAGAATTACCTTCAACT
ATTCATATTGAAAATAACAA

Downstream 100 bases:

>100_bases
ATTTTGAATATGATGTAAAAACATAATCAAATAAAACTAGACACAGATTAATAAGAACTCAACTATGTCAACAACAAATA
AAAACGACGAAGTACCGACT

Product: endonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MIQPKPCSVLSLDIGDKRIGIAGCDPLGISITHLPAIFRDSFEKDLKEFEKICFDRRVEGLICGNPLDMNGMETKQSIRC
KKYGIKLAKCLKLPLAFINEHCSTLEAKEKFSLKNDKTGRLDSAAAAILLQQWLIEGPDLDDSN

Sequences:

>Translated_144_residues
MIQPKPCSVLSLDIGDKRIGIAGCDPLGISITHLPAIFRDSFEKDLKEFEKICFDRRVEGLICGNPLDMNGMETKQSIRC
KKYGIKLAKCLKLPLAFINEHCSTLEAKEKFSLKNDKTGRLDSAAAAILLQQWLIEGPDLDDSN
>Mature_144_residues
MIQPKPCSVLSLDIGDKRIGIAGCDPLGISITHLPAIFRDSFEKDLKEFEKICFDRRVEGLICGNPLDMNGMETKQSIRC
KKYGIKLAKCLKLPLAFINEHCSTLEAKEKFSLKNDKTGRLDSAAAAILLQQWLIEGPDLDDSN

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_PROM1 (A2C1M9)

Other databases:

- EMBL:   CP000553
- RefSeq:   YP_001014654.1
- ProteinModelPortal:   A2C1M9
- SMR:   A2C1M9
- STRING:   A2C1M9
- GeneID:   4781042
- GenomeReviews:   CP000553_GR
- KEGG:   pme:NATL1_08311
- eggNOG:   COG0816
- HOGENOM:   HBG607919
- OMA:   NEHSSTW
- ProtClustDB:   CLSK919441
- BioCyc:   PMAR167555:NATL1_08311-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 16024; Mature: 16024

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
4.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQPKPCSVLSLDIGDKRIGIAGCDPLGISITHLPAIFRDSFEKDLKEFEKICFDRRVEG
CCCCCCCCEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
LICGNPLDMNGMETKQSIRCKKYGIKLAKCLKLPLAFINEHCSTLEAKEKFSLKNDKTGR
EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
LDSAAAAILLQQWLIEGPDLDDSN
HHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MIQPKPCSVLSLDIGDKRIGIAGCDPLGISITHLPAIFRDSFEKDLKEFEKICFDRRVEG
CCCCCCCCEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
LICGNPLDMNGMETKQSIRCKKYGIKLAKCLKLPLAFINEHCSTLEAKEKFSLKNDKTGR
EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
LDSAAAAILLQQWLIEGPDLDDSN
HHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA