Click here to switch to the map view.

The map label for this gene is ccmC

Identifier: 124025510

GI number: 124025510

Start: 739386

End: 740333

Strand: Direct

Name: ccmC

Synonym: NATL1_08031

Alternate gene names: 124025510

Gene position: 739386-740333 (Clockwise)

Preceding gene: 124025509

Following gene: 124025512

Centisome position: 39.65

GC content: 37.66

Gene sequence:

>948_bases
ATGGTTGATTTTCAGTTAAATAATTTTTCTTTTGACCCTGTTGTTTCCCTTGGGTTAGCAGCTTTTCTTTTCTTGTTGAT
AGCTTTGCCTATTTCATTTTGGTCAGTTGCTGGTGGCAGTGATTCATCCAAAGCCAGATTTTTAGTTGCAACATCTAATC
TTTTTCTAACTAGTCAATTGATCCTTAGATGGTGGCAATCGGGACATTTTCCAATTAGTAATCTCTATGAATCACTTTGT
TTTTTGACTTGGGGTTGCACATTAGCTCAACTTTTTGTCGAAAGGGCATGGCGGTCTCCAATCGTTTCTGCAGTTGCGAC
GCCTGTGTCATTGCTATCAATAGGTTTTGCCAGTTTTGTTTTACCTGAGAATTTACAATCTTCAGCTCCTTTAGTACCAG
CACTTCGTTCTAGTTGGTTAGTTATGCATGTGAGTGTAATTATGTGCTCTTACGCTGCATTATTAATAGGGTCAATTTTG
TCTTTTGGTGTCTTTCTTGTTGATGGGAAAAAGCAATTCAATATCCGTAATAGTTCCTTTGGGTCTGGTTCGTTTAGGCA
AAGTTCTGAGCTATATCTTGATGAAAGAAATGAGAACTTAAATTCTATACAACCAATTGAATTTACAAATGCTGAGCAAC
TTGATTCTTTAAGTTATAGATCAATAACTGCTGGATTTTTGTTGCTTACAGTTGGTCTTATTAGTGGTGCTGTTTGGGCT
AATGAAGCTTGGGGTAGTTGGTGGAGTTGGGACCCTAAAGAAACTTGGGCTTTAATATGTTGGTTGGTTTATGCGGCTTA
TTTACATACTAGGTTAACAAGAGGCTGGCAAGGTAAAAAGCCTGCAATTCTTGCTATAGCAGGCTTTTTCGTTATTATTG
TTTGCTATATTGGAGTGAACCTTCTTGGGGTAGGTTTACATAGTTATGGTTGGTTCTTCGATACATAG

Upstream 100 bases:

>100_bases
TGGTCTCCTGTTTTTTTGTCTATGTTAGGGGGAGGTTTTTTGTTAAAACAGGCAGGCAAATGATCTGGTCTTTCTAAATA
ATCTCTAATAGCTTTTATCA

Downstream 100 bases:

>100_bases
TAATTAACAATTAAGTTAATTATTTTTCAACAATTATTCCATTCTGTGCGTCGTTGGCAACTTTTCTTAGTGCATCACAA
CCTTCTTTAAGTGTTGGATA

Product: putative heme transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MVDFQLNNFSFDPVVSLGLAAFLFLLIALPISFWSVAGGSDSSKARFLVATSNLFLTSQLILRWWQSGHFPISNLYESLC
FLTWGCTLAQLFVERAWRSPIVSAVATPVSLLSIGFASFVLPENLQSSAPLVPALRSSWLVMHVSVIMCSYAALLIGSIL
SFGVFLVDGKKQFNIRNSSFGSGSFRQSSELYLDERNENLNSIQPIEFTNAEQLDSLSYRSITAGFLLLTVGLISGAVWA
NEAWGSWWSWDPKETWALICWLVYAAYLHTRLTRGWQGKKPAILAIAGFFVIIVCYIGVNLLGVGLHSYGWFFDT

Sequences:

>Translated_315_residues
MVDFQLNNFSFDPVVSLGLAAFLFLLIALPISFWSVAGGSDSSKARFLVATSNLFLTSQLILRWWQSGHFPISNLYESLC
FLTWGCTLAQLFVERAWRSPIVSAVATPVSLLSIGFASFVLPENLQSSAPLVPALRSSWLVMHVSVIMCSYAALLIGSIL
SFGVFLVDGKKQFNIRNSSFGSGSFRQSSELYLDERNENLNSIQPIEFTNAEQLDSLSYRSITAGFLLLTVGLISGAVWA
NEAWGSWWSWDPKETWALICWLVYAAYLHTRLTRGWQGKKPAILAIAGFFVIIVCYIGVNLLGVGLHSYGWFFDT
>Mature_315_residues
MVDFQLNNFSFDPVVSLGLAAFLFLLIALPISFWSVAGGSDSSKARFLVATSNLFLTSQLILRWWQSGHFPISNLYESLC
FLTWGCTLAQLFVERAWRSPIVSAVATPVSLLSIGFASFVLPENLQSSAPLVPALRSSWLVMHVSVIMCSYAALLIGSIL
SFGVFLVDGKKQFNIRNSSFGSGSFRQSSELYLDERNENLNSIQPIEFTNAEQLDSLSYRSITAGFLLLTVGLISGAVWA
NEAWGSWWSWDPKETWALICWLVYAAYLHTRLTRGWQGKKPAILAIAGFFVIIVCYIGVNLLGVGLHSYGWFFDT

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CCSA_PROM1 (A2C1K1)

Other databases:

- EMBL:   CP000553
- RefSeq:   YP_001014626.1
- STRING:   A2C1K1
- GeneID:   4779837
- GenomeReviews:   CP000553_GR
- KEGG:   pme:NATL1_08031
- eggNOG:   COG0755
- HOGENOM:   HBG733666
- OMA:   WALICWL
- ProtClustDB:   CLSK919431
- BioCyc:   PMAR167555:NATL1_08031-MONOMER
- HAMAP:   MF_01391
- InterPro:   IPR002541
- InterPro:   IPR017562
- TIGRFAMs:   TIGR03144

Pfam domain/function: PF01578 Cytochrom_C_asm

EC number: NA

Molecular weight: Translated: 34987; Mature: 34987

Theoretical pI: Translated: 6.91; Mature: 6.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1fee3a88)-; HASH(0x1b03f3d8)-; HASH(0x1e752a88)-; HASH(0x1fdb5748)-; HASH(0x1fee24b8)-; HASH(0x20597438)-; HASH(0x2059b240)-;

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDFQLNNFSFDPVVSLGLAAFLFLLIALPISFWSVAGGSDSSKARFLVATSNLFLTSQL
CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHH
ILRWWQSGHFPISNLYESLCFLTWGCTLAQLFVERAWRSPIVSAVATPVSLLSIGFASFV
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPENLQSSAPLVPALRSSWLVMHVSVIMCSYAALLIGSILSFGVFLVDGKKQFNIRNSSF
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCEEEECCCCC
GSGSFRQSSELYLDERNENLNSIQPIEFTNAEQLDSLSYRSITAGFLLLTVGLISGAVWA
CCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC
NEAWGSWWSWDPKETWALICWLVYAAYLHTRLTRGWQGKKPAILAIAGFFVIIVCYIGVN
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
LLGVGLHSYGWFFDT
HHHHHHHHCCCCCCH
>Mature Secondary Structure
MVDFQLNNFSFDPVVSLGLAAFLFLLIALPISFWSVAGGSDSSKARFLVATSNLFLTSQL
CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHH
ILRWWQSGHFPISNLYESLCFLTWGCTLAQLFVERAWRSPIVSAVATPVSLLSIGFASFV
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPENLQSSAPLVPALRSSWLVMHVSVIMCSYAALLIGSILSFGVFLVDGKKQFNIRNSSF
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCEEEECCCCC
GSGSFRQSSELYLDERNENLNSIQPIEFTNAEQLDSLSYRSITAGFLLLTVGLISGAVWA
CCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC
NEAWGSWWSWDPKETWALICWLVYAAYLHTRLTRGWQGKKPAILAIAGFFVIIVCYIGVN
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
LLGVGLHSYGWFFDT
HHHHHHHHCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA