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The map label for this gene is pcbA [H]

Identifier: 124025397

GI number: 124025397

Start: 632978

End: 634027

Strand: Direct

Name: pcbA [H]

Synonym: NATL1_06881

Alternate gene names: 124025397

Gene position: 632978-634027 (Clockwise)

Preceding gene: 124025395

Following gene: 124025398

Centisome position: 33.94

GC content: 43.81

Gene sequence:

>1050_bases
ATGCAGACCTATGGAAATTCAGCTGTCACCTACGGGTGGTGGGCTGGTAACTCAGGGGTCACCAACCGTTCAGGCAAATT
TATTGCTGCTCATGCCGCTCATACCGGTTTGATTGCTTTCTGGGCTGGTGCCTTCACGTTATTTGAATTGGCTCGATTTG
ACCCTTCTGTACCAATGGGTCATCAGCCTTTAATTGCGCTTCCTCATTTAGCAACTTTGGGTATAGGTTTCGATGAAACT
GGAACCTTTGTTGGTGGAAGTGCGGTTGTTGCAGTTGCTGTATGTCATCTAGTTGGATCCATGGCTTATGGGGCAGGTGG
ATTGATGCACTCTCTTCTTTTCTCTAGTGACATGCAGGAATCTTCTGTGCCACAGGCCAGAAAATTCAAGCTTGAATGGG
ACAATCCAGATAACCAGACTTTCATCCTTGGACATCATTTGATTTTCTTTGGTGTTGCATGTATTTGGTTTGTTGAATGG
GCGCGAATTCATGGGGTCTACGATCCTGCTATTGGTGCTATTCGTCAGGTTGAATACGACCTTAATTTGAGTCATATCTG
GGACCATCAGTTTGATTTCCTAACTATTGACAGCTTGGAAGATGTTATGGGAGGTCATGCTTTCTTGGCTTTCTTAGAAA
TTACTGGTGGTGCTTTCCACATCGCTACTAAGCAAGTTGGAGAATACACGAAGTTCAAAGGAGCTGGGCTTCTTTCTGCA
GAAGCTATTCTTTCTTGGTCACTAGCTGGTATTGGCTGGATGGCAGTTGTCGCAGCATTCTGGAGTGCAACAAATACCAC
TGTTTACCCTGTTGAATGGTTTGGAGAACCACTAGCACTTAAATTTGGAATATCTCCTTATTGGGTAGATACTGTTGATT
TAGGTTCAGCCCACACTTCTAGGGCTTGGCTAGCTAATGTTCACTACTACTTTGGATTCTTCTTTATTCAGGGTCACCTA
TGGCATGCTCTTAGGGCAATGGGATTCGATTTCAAACGAGTAACTAGTGCCTTAAGTAATCTTGATACTGCTTCAGTATC
TTTAAAATAG

Upstream 100 bases:

>100_bases
GGATTTAAATAATAAAAAAAATTTACAGATTCTTTCTGTTGCATGAGTATTCGGTGAAATTGAAGTATTCTCTGTTCGGT
TTTGAAAAATAGAACTTCTA

Downstream 100 bases:

>100_bases
TTAAATAAATTTAACTTAATAAAAAAGCCCCACATTTATGGGGCTTTTTTATTGGGTTCTATTTATCAATACCTCAACTC
TTTCAATAATAATTAATCAG

Product: light-harvesting complex protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 349; Mature: 349

Protein sequence:

>349_residues
MQTYGNSAVTYGWWAGNSGVTNRSGKFIAAHAAHTGLIAFWAGAFTLFELARFDPSVPMGHQPLIALPHLATLGIGFDET
GTFVGGSAVVAVAVCHLVGSMAYGAGGLMHSLLFSSDMQESSVPQARKFKLEWDNPDNQTFILGHHLIFFGVACIWFVEW
ARIHGVYDPAIGAIRQVEYDLNLSHIWDHQFDFLTIDSLEDVMGGHAFLAFLEITGGAFHIATKQVGEYTKFKGAGLLSA
EAILSWSLAGIGWMAVVAAFWSATNTTVYPVEWFGEPLALKFGISPYWVDTVDLGSAHTSRAWLANVHYYFGFFFIQGHL
WHALRAMGFDFKRVTSALSNLDTASVSLK

Sequences:

>Translated_349_residues
MQTYGNSAVTYGWWAGNSGVTNRSGKFIAAHAAHTGLIAFWAGAFTLFELARFDPSVPMGHQPLIALPHLATLGIGFDET
GTFVGGSAVVAVAVCHLVGSMAYGAGGLMHSLLFSSDMQESSVPQARKFKLEWDNPDNQTFILGHHLIFFGVACIWFVEW
ARIHGVYDPAIGAIRQVEYDLNLSHIWDHQFDFLTIDSLEDVMGGHAFLAFLEITGGAFHIATKQVGEYTKFKGAGLLSA
EAILSWSLAGIGWMAVVAAFWSATNTTVYPVEWFGEPLALKFGISPYWVDTVDLGSAHTSRAWLANVHYYFGFFFIQGHL
WHALRAMGFDFKRVTSALSNLDTASVSLK
>Mature_349_residues
MQTYGNSAVTYGWWAGNSGVTNRSGKFIAAHAAHTGLIAFWAGAFTLFELARFDPSVPMGHQPLIALPHLATLGIGFDET
GTFVGGSAVVAVAVCHLVGSMAYGAGGLMHSLLFSSDMQESSVPQARKFKLEWDNPDNQTFILGHHLIFFGVACIWFVEW
ARIHGVYDPAIGAIRQVEYDLNLSHIWDHQFDFLTIDSLEDVMGGHAFLAFLEITGGAFHIATKQVGEYTKFKGAGLLSA
EAILSWSLAGIGWMAVVAAFWSATNTTVYPVEWFGEPLALKFGISPYWVDTVDLGSAHTSRAWLANVHYYFGFFFIQGHL
WHALRAMGFDFKRVTSALSNLDTASVSLK

Specific function: The antenna complex functions as a light receptor, it captures and delivers excitation energy to photosystems II and I. The Prochlorales pcb genes are not related to the higher plant LHCs [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbB/psbC family. IsiA/pcb subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000932 [H]

Pfam domain/function: PF00421 PSII [H]

EC number: NA

Molecular weight: Translated: 38196; Mature: 38196

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: PS00639 THIOL_PROTEASE_HIS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTYGNSAVTYGWWAGNSGVTNRSGKFIAAHAAHTGLIAFWAGAFTLFELARFDPSVPMG
CCCCCCCEEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
HQPLIALPHLATLGIGFDETGTFVGGSAVVAVAVCHLVGSMAYGAGGLMHSLLFSSDMQE
CCCCEECCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCC
SSVPQARKFKLEWDNPDNQTFILGHHLIFFGVACIWFVEWARIHGVYDPAIGAIRQVEYD
CCCCCCCEEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHEEEC
LNLSHIWDHQFDFLTIDSLEDVMGGHAFLAFLEITGGAFHIATKQVGEYTKFKGAGLLSA
CCHHHHCCCCCCEEEECCHHHHHCCHHEEEEEEECCCEEEEEHHHHCCHHHCCCCCCCHH
EAILSWSLAGIGWMAVVAAFWSATNTTVYPVEWFGEPLALKFGISPYWVDTVDLGSAHTS
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHCCCCEEEEECCCCEEEEEEECCCCCCC
RAWLANVHYYFGFFFIQGHLWHALRAMGFDFKRVTSALSNLDTASVSLK
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEC
>Mature Secondary Structure
MQTYGNSAVTYGWWAGNSGVTNRSGKFIAAHAAHTGLIAFWAGAFTLFELARFDPSVPMG
CCCCCCCEEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
HQPLIALPHLATLGIGFDETGTFVGGSAVVAVAVCHLVGSMAYGAGGLMHSLLFSSDMQE
CCCCEECCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCC
SSVPQARKFKLEWDNPDNQTFILGHHLIFFGVACIWFVEWARIHGVYDPAIGAIRQVEYD
CCCCCCCEEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHEEEC
LNLSHIWDHQFDFLTIDSLEDVMGGHAFLAFLEITGGAFHIATKQVGEYTKFKGAGLLSA
CCHHHHCCCCCCEEEECCHHHHHCCHHEEEEEEECCCEEEEEHHHHCCHHHCCCCCCCHH
EAILSWSLAGIGWMAVVAAFWSATNTTVYPVEWFGEPLALKFGISPYWVDTVDLGSAHTS
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHCCCCEEEEECCCCEEEEEEECCCCCCC
RAWLANVHYYFGFFFIQGHLWHALRAMGFDFKRVTSALSNLDTASVSLK
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA