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The map label for this gene is ctpA [H]

Identifier: 124025129

GI number: 124025129

Start: 381145

End: 382518

Strand: Reverse

Name: ctpA [H]

Synonym: NATL1_04161

Alternate gene names: 124025129

Gene position: 382518-381145 (Counterclockwise)

Preceding gene: 124025132

Following gene: 124025128

Centisome position: 20.51

GC content: 38.21

Gene sequence:

>1374_bases
ATGCACTGTACTTTCAAATATCTTACTCGATGTGCCCCTTGGTCGCCGCAAAAGATCAATCCAATGCTCTCAACTGTTAA
ATCTTTAACTAAGCCACTGCAAAGACTTTTTGCAGTATTAATTAGCTTTGGGATTTTATTTCAAGTCTTTACTCAGCCCG
CTTTTGCCCTAAATGATGGACAATTGCTTGTTATTGAGGCATGGAATCAAGTAAATGCAGGTTATTTAGATCCTAAGAAA
TTTGATGAAATTCAATGGAAAAAACTTCGTCAAAAAGCTCTTGAAAAGCCAATAAACAATTCTCAACAAGCCTATTCAGC
TATTGAAGCAATGCTTCTTCCTCTTGGAGATCCATATACGCGCTTATTAAGACCAGTTGATTACGAGGCGATGAAGAAAA
GCAATATAGGTAGTGAAATTAATGGAGTTGGACTTCAATTAGGAGCAAGAAAAGAAGATGGAGACATAGTCGTAATATCT
CCTCTTGAAGGCTCTCCAGCATCGGATGCAGGAATTACAAGTGGAACGATTATAAAAAAAGTCAACGGTCAATCCCCCAA
GCAATTAGGCCTAGAAGCAACAGCAGCAAAATTGAGAGGCCAAACTGGAACACAAGTAATCGTTGAATTAGAGCAGCCTG
ACAATGAAATAAAAGAAATTTCTTTAGAAAGAAGAAGTGTTGATTTAAGACCAGTTAGGACTAAGAGAATAAGGAACGAA
TCACATACATTTGGTTATTTAAGAATTACACAATTTAGTGAGGGAGTCCCTGAGCAAGTCAAGGAAGCATTAGAAGAACT
TTCTGGGAAAGAAATAGATGGACTAATTTTGGACCTAAGAAATAACTCTGGAGGTCTCGTAAGTTCTGGACTCGCAGTTG
CTGACGATTTCCTCAGCAACATGCCGATTGTTGAAACAAAAAAAAGAGATTCCATAAATGATCCCATCAGTTCTGGACTC
GAAACTATTTATGATGGGCCAATGGTTACTCTTGTAAATGAGGGGACAGCAAGTGCTAGTGAAATTCTTGCTGGTGCTCT
TCAGGATAATAAAAGATCTGAACTCATAGGTAATAAAACTTTTGGGAAAGGCCTCATACAATCTTTGACCAATCTTAGTG
ATGGCAGTGGTTTAGCTGTAACAGTTGCTAGTTATCTAACTCCTAGTGGAAGAGACATACAAAATCTTGGAATTGAGCCT
GATCGCCTCTTGGAAATGCCAGAGCCACTTAATCCAGGTTCTGATGACGATAGATGGCTTTTAGATGCAGAGCTGATCAT
GCAAGCCACCTTGGACAAAGAAGAAGTCTCAGAAAAATTATCAAAAGAGACTTTGGTAAAAGAAGAACAATTAATAAGCC
AAGAAATTGAATAA

Upstream 100 bases:

>100_bases
GTGGAGGAACGTATTTTGAAGTGACATCATCAGCTATGTCCTGTATCTCAAGACGTTCCTGGAACCAGTCATAAACCGGT
GAAGAGTTCGCCATCCACTT

Downstream 100 bases:

>100_bases
GTCATGTCGTCAAGAACTTATTACGACCCTCTTCATCAATCCATTACATTAAATAGTTCGATTCCAGAGGAAAAAATGGT
AATGGAATTAATAGATTCCT

Product: carboxyl-terminal protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 457; Mature: 457

Protein sequence:

>457_residues
MHCTFKYLTRCAPWSPQKINPMLSTVKSLTKPLQRLFAVLISFGILFQVFTQPAFALNDGQLLVIEAWNQVNAGYLDPKK
FDEIQWKKLRQKALEKPINNSQQAYSAIEAMLLPLGDPYTRLLRPVDYEAMKKSNIGSEINGVGLQLGARKEDGDIVVIS
PLEGSPASDAGITSGTIIKKVNGQSPKQLGLEATAAKLRGQTGTQVIVELEQPDNEIKEISLERRSVDLRPVRTKRIRNE
SHTFGYLRITQFSEGVPEQVKEALEELSGKEIDGLILDLRNNSGGLVSSGLAVADDFLSNMPIVETKKRDSINDPISSGL
ETIYDGPMVTLVNEGTASASEILAGALQDNKRSELIGNKTFGKGLIQSLTNLSDGSGLAVTVASYLTPSGRDIQNLGIEP
DRLLEMPEPLNPGSDDDRWLLDAELIMQATLDKEEVSEKLSKETLVKEEQLISQEIE

Sequences:

>Translated_457_residues
MHCTFKYLTRCAPWSPQKINPMLSTVKSLTKPLQRLFAVLISFGILFQVFTQPAFALNDGQLLVIEAWNQVNAGYLDPKK
FDEIQWKKLRQKALEKPINNSQQAYSAIEAMLLPLGDPYTRLLRPVDYEAMKKSNIGSEINGVGLQLGARKEDGDIVVIS
PLEGSPASDAGITSGTIIKKVNGQSPKQLGLEATAAKLRGQTGTQVIVELEQPDNEIKEISLERRSVDLRPVRTKRIRNE
SHTFGYLRITQFSEGVPEQVKEALEELSGKEIDGLILDLRNNSGGLVSSGLAVADDFLSNMPIVETKKRDSINDPISSGL
ETIYDGPMVTLVNEGTASASEILAGALQDNKRSELIGNKTFGKGLIQSLTNLSDGSGLAVTVASYLTPSGRDIQNLGIEP
DRLLEMPEPLNPGSDDDRWLLDAELIMQATLDKEEVSEKLSKETLVKEEQLISQEIE
>Mature_457_residues
MHCTFKYLTRCAPWSPQKINPMLSTVKSLTKPLQRLFAVLISFGILFQVFTQPAFALNDGQLLVIEAWNQVNAGYLDPKK
FDEIQWKKLRQKALEKPINNSQQAYSAIEAMLLPLGDPYTRLLRPVDYEAMKKSNIGSEINGVGLQLGARKEDGDIVVIS
PLEGSPASDAGITSGTIIKKVNGQSPKQLGLEATAAKLRGQTGTQVIVELEQPDNEIKEISLERRSVDLRPVRTKRIRNE
SHTFGYLRITQFSEGVPEQVKEALEELSGKEIDGLILDLRNNSGGLVSSGLAVADDFLSNMPIVETKKRDSINDPISSGL
ETIYDGPMVTLVNEGTASASEILAGALQDNKRSELIGNKTFGKGLIQSLTNLSDGSGLAVTVASYLTPSGRDIQNLGIEP
DRLLEMPEPLNPGSDDDRWLLDAELIMQATLDKEEVSEKLSKETLVKEEQLISQEIE

Specific function: Cleavage of the 16 C-terminal residues from the D1 precursor of photosystem II. May be involved in protection of the bacterium from thermal and osmotic stresses [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1788134, Length=329, Percent_Identity=27.0516717325228, Blast_Score=102, Evalue=6e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 50186; Mature: 50186

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHCTFKYLTRCAPWSPQKINPMLSTVKSLTKPLQRLFAVLISFGILFQVFTQPAFALNDG
CCCHHHHHHHCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCC
QLLVIEAWNQVNAGYLDPKKFDEIQWKKLRQKALEKPINNSQQAYSAIEAMLLPLGDPYT
CEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHH
RLLRPVDYEAMKKSNIGSEINGVGLQLGARKEDGDIVVISPLEGSPASDAGITSGTIIKK
HHHCCCCHHHHHHCCCCCCCCCCCEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEE
VNGQSPKQLGLEATAAKLRGQTGTQVIVELEQPDNEIKEISLERRSVDLRPVRTKRIRNE
CCCCCHHHHCHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCHHHHHHCCC
SHTFGYLRITQFSEGVPEQVKEALEELSGKEIDGLILDLRNNSGGLVSSGLAVADDFLSN
CCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCEECCCHHHHHHHHCC
MPIVETKKRDSINDPISSGLETIYDGPMVTLVNEGTASASEILAGALQDNKRSELIGNKT
CCCEECCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCHHHHHCCCH
FGKGLIQSLTNLSDGSGLAVTVASYLTPSGRDIQNLGIEPDRLLEMPEPLNPGSDDDRWL
HHHHHHHHHHCCCCCCCCEEEHHHHHCCCCCCHHHCCCCHHHHHCCCCCCCCCCCCCCEE
LDAELIMQATLDKEEVSEKLSKETLVKEEQLISQEIE
EHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MHCTFKYLTRCAPWSPQKINPMLSTVKSLTKPLQRLFAVLISFGILFQVFTQPAFALNDG
CCCHHHHHHHCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCC
QLLVIEAWNQVNAGYLDPKKFDEIQWKKLRQKALEKPINNSQQAYSAIEAMLLPLGDPYT
CEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHH
RLLRPVDYEAMKKSNIGSEINGVGLQLGARKEDGDIVVISPLEGSPASDAGITSGTIIKK
HHHCCCCHHHHHHCCCCCCCCCCCEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEE
VNGQSPKQLGLEATAAKLRGQTGTQVIVELEQPDNEIKEISLERRSVDLRPVRTKRIRNE
CCCCCHHHHCHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCHHHHHHCCC
SHTFGYLRITQFSEGVPEQVKEALEELSGKEIDGLILDLRNNSGGLVSSGLAVADDFLSN
CCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCEECCCHHHHHHHHCC
MPIVETKKRDSINDPISSGLETIYDGPMVTLVNEGTASASEILAGALQDNKRSELIGNKT
CCCEECCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCHHHHHCCCH
FGKGLIQSLTNLSDGSGLAVTVASYLTPSGRDIQNLGIEPDRLLEMPEPLNPGSDDDRWL
HHHHHHHHHHCCCCCCCCEEEHHHHHCCCCCCHHHCCCCHHHHHCCCCCCCCCCCCCCEE
LDAELIMQATLDKEEVSEKLSKETLVKEEQLISQEIE
EHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8034700; 8058761; 8590279; 8905231 [H]