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The map label for this gene is ndhC

Identifier: 124025087

GI number: 124025087

Start: 347034

End: 347396

Strand: Reverse

Name: ndhC

Synonym: NATL1_03741

Alternate gene names: 124025087

Gene position: 347396-347034 (Counterclockwise)

Preceding gene: 124025093

Following gene: 124025086

Centisome position: 18.63

GC content: 38.29

Gene sequence:

>363_bases
ATGTTTTCCCTTCAGGGTTATGAGTATTTTTTAGGATTTCTTCTTATTTCTGGAGCAGTTCCAATTCTTGCTCTCACAAC
AAATAAGTTAATAGCTCCTAAAAGCAAGGCTGGAGAAAGACAGCTTACATATGAATCTGGTATGGAGCCCATTGGAGGGG
CATGGATTCAATTTAATATTCGTTACTACATGTTTGCTCTTGTTTTCGTTATATTTGATGTGGAGACAGTGTTCCTTTAC
CCATGGGCAGTTGCATTTCACAAACTTGGGTTATTAGCATTCATAGAAGCTCTTGTTTTTATCACAATACTAGTTGTGGC
TTTAGCATACGCATGGAGAAAAGGTGCCCTTGAATGGAGTTGA

Upstream 100 bases:

>100_bases
TTTTGTCTTCACTCACAGTTTTCACTTTCACATATAACAACTCTATGGCACTAATCTAGAAAATGACTGTCAGACTGATA
TTGAAATCAGTAATTCATTC

Downstream 100 bases:

>100_bases
ATCCCTTGAAAAAATCTCCCTCTTCTGAAGCTGTAAGAAATCTTAGAGAAGCTTCCTGCGGTCCAGTTGGAACGCCGACA
GTAACGAATGATTTAAGCGA

Product: NADH dehydrogenase subunit A

Products: NAD+; ubiquinol

Alternate protein names: NAD(P)H dehydrogenase subunit 3; NADH-plastoquinone oxidoreductase subunit 3; NDH-1 subunit 3; NDH-C

Number of amino acids: Translated: 120; Mature: 120

Protein sequence:

>120_residues
MFSLQGYEYFLGFLLISGAVPILALTTNKLIAPKSKAGERQLTYESGMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLY
PWAVAFHKLGLLAFIEALVFITILVVALAYAWRKGALEWS

Sequences:

>Translated_120_residues
MFSLQGYEYFLGFLLISGAVPILALTTNKLIAPKSKAGERQLTYESGMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLY
PWAVAFHKLGLLAFIEALVFITILVVALAYAWRKGALEWS
>Mature_120_residues
MFSLQGYEYFLGFLLISGAVPILALTTNKLIAPKSKAGERQLTYESGMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLY
PWAVAFHKLGLLAFIEALVFITILVVALAYAWRKGALEWS

Specific function: NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone

COG id: COG0838

COG function: function code C; NADH:ubiquinone oxidoreductase subunit 3 (chain A)

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the complex I subunit 3 family

Homologues:

Organism=Escherichia coli, GI1788625, Length=108, Percent_Identity=32.4074074074074, Blast_Score=79, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NU3C_PROM1 (A2C0C8)

Other databases:

- EMBL:   CP000553
- RefSeq:   YP_001014203.1
- STRING:   A2C0C8
- GeneID:   4779547
- GenomeReviews:   CP000553_GR
- KEGG:   pme:NATL1_03741
- eggNOG:   COG0838
- HOGENOM:   HBG605540
- OMA:   GERELTY
- ProtClustDB:   PRK06602
- BioCyc:   PMAR167555:NATL1_03741-MONOMER
- GO:   GO:0006810
- HAMAP:   MF_01394
- InterPro:   IPR023043
- InterPro:   IPR000440
- PANTHER:   PTHR11058

Pfam domain/function: PF00507 Oxidored_q4

EC number: 1.6.5.3

Molecular weight: Translated: 13581; Mature: 13581

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1e7ffa74)-; HASH(0x1e3d30b4)-; HASH(0x1fabd960)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSLQGYEYFLGFLLISGAVPILALTTNKLIAPKSKAGERQLTYESGMEPIGGAWIQFNI
CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHCCCCCCCCEEEEEHH
RYYMFALVFVIFDVETVFLYPWAVAFHKLGLLAFIEALVFITILVVALAYAWRKGALEWS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
>Mature Secondary Structure
MFSLQGYEYFLGFLLISGAVPILALTTNKLIAPKSKAGERQLTYESGMEPIGGAWIQFNI
CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHCCCCCCCCEEEEEHH
RYYMFALVFVIFDVETVFLYPWAVAFHKLGLLAFIEALVFITILVVALAYAWRKGALEWS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NADH; H+; ubiquinone

Specific reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA