| Definition | Prochlorococcus marinus str. NATL1A, complete genome. |
|---|---|
| Accession | NC_008819 |
| Length | 1,864,731 |
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The map label for this gene is 124025082
Identifier: 124025082
GI number: 124025082
Start: 342594
End: 343439
Strand: Reverse
Name: 124025082
Synonym: NATL1_03691
Alternate gene names: NA
Gene position: 343439-342594 (Counterclockwise)
Preceding gene: 124025083
Following gene: 124025080
Centisome position: 18.42
GC content: 30.97
Gene sequence:
>846_bases ATGCGAAGAAGTTTACGAGATGCTTTTGTTGGCTTTTCACTATTAGGTGGGTTAGTTATCTTTTCAGGAGCAATGCTTTG GTTAAGAGATTTTCGTTTAGGTTCTAAAACATGGGAAATATCTGCAAGCTTTAAAGATGCAAGTGGTCTTGCCAAGATGT CTCCAGTTACTTATCGGGGAATCATTGTTGGATCTGTTCAAAAGATAAGTTTCACACCAAACACTGTTGAAACTAAAATA AAATTAAATAACGATAATCTAATTTTACCAAAACCTGTAATTGCCAAAATCGTCACAAGTTCTATGCTTGGAGGAGATGC TCAATTATCTTTAATATCACTAGGCAAATCATTAAATAAAAATGAACTAATTAAAGTAAATAAAGATTGTCCTAGAAAAA GAATCTTATGTAATGGAGCTGAAATTAAAGGTGTTGAAATGGTTAGCATATCAAGCTTGACAGAGGGTATAAATGGAATT ATTAATGAAGCTGATAAACAAGCAATAGTAAATAAAGTATCTGAATCTATTCAACAATTTGATCGTACTCAAGCTAATCT TGACGAACTTGTCTTGTTATCCAAATCAGAACTTATAAGAGTAAAGCCTATAATTTCTGAACTAACAAAAGCTTCTTTTC ATTTAAATAATATTCTTGAAAGCCTAGACAATCCTGAGACTTTAAAAGATATTCAGGAACTTGCCTCAACATCTAGTTCT CTAACAAAGAAAATTGATCAAATGAGCTCAGATATGGGAAATATTATGGAAGACAAAGAACTTATAAATGCTCTAAAAAA GGTAACCATTGGTTTAAGTAAATTATTTGATGATATATATCCTTAA
Upstream 100 bases:
>100_bases GGATCTATAGATCAATTTAAACAAAGTGAAAATACCTATGTGAAACAATTTCGCACAGGCAATCTTAAAGGACCAATGCA ACCTAAGGACTCATAAATTT
Downstream 100 bases:
>100_bases AAAAACAAGTTTCAGGTAACGCTATTAATCGCATCCATTGCAATTGAAGCAATAGCCTTATCACTTGCCTTAGGTAATTG AACATATTTACCTCCGGATG
Product: putative ABC transporter
Products: NA
Alternate protein names: Mce Related Protein; Mammalian Cell Entry Related Domain Protein; ABC-Type Transport System Periplasmic Component; Mammalian Cell Entry Related Domain-Containing Protein
Number of amino acids: Translated: 281; Mature: 281
Protein sequence:
>281_residues MRRSLRDAFVGFSLLGGLVIFSGAMLWLRDFRLGSKTWEISASFKDASGLAKMSPVTYRGIIVGSVQKISFTPNTVETKI KLNNDNLILPKPVIAKIVTSSMLGGDAQLSLISLGKSLNKNELIKVNKDCPRKRILCNGAEIKGVEMVSISSLTEGINGI INEADKQAIVNKVSESIQQFDRTQANLDELVLLSKSELIRVKPIISELTKASFHLNNILESLDNPETLKDIQELASTSSS LTKKIDQMSSDMGNIMEDKELINALKKVTIGLSKLFDDIYP
Sequences:
>Translated_281_residues MRRSLRDAFVGFSLLGGLVIFSGAMLWLRDFRLGSKTWEISASFKDASGLAKMSPVTYRGIIVGSVQKISFTPNTVETKI KLNNDNLILPKPVIAKIVTSSMLGGDAQLSLISLGKSLNKNELIKVNKDCPRKRILCNGAEIKGVEMVSISSLTEGINGI INEADKQAIVNKVSESIQQFDRTQANLDELVLLSKSELIRVKPIISELTKASFHLNNILESLDNPETLKDIQELASTSSS LTKKIDQMSSDMGNIMEDKELINALKKVTIGLSKLFDDIYP >Mature_281_residues MRRSLRDAFVGFSLLGGLVIFSGAMLWLRDFRLGSKTWEISASFKDASGLAKMSPVTYRGIIVGSVQKISFTPNTVETKI KLNNDNLILPKPVIAKIVTSSMLGGDAQLSLISLGKSLNKNELIKVNKDCPRKRILCNGAEIKGVEMVSISSLTEGINGI INEADKQAIVNKVSESIQQFDRTQANLDELVLLSKSELIRVKPIISELTKASFHLNNILESLDNPETLKDIQELASTSSS LTKKIDQMSSDMGNIMEDKELINALKKVTIGLSKLFDDIYP
Specific function: Unknown
COG id: COG1463
COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30872; Mature: 30872
Theoretical pI: Translated: 9.41; Mature: 9.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRSLRDAFVGFSLLGGLVIFSGAMLWLRDFRLGSKTWEISASFKDASGLAKMSPVTYRG CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHCCCCEEEE IIVGSVQKISFTPNTVETKIKLNNDNLILPKPVIAKIVTSSMLGGDAQLSLISLGKSLNK EEEECCEEEEECCCCEEEEEEECCCCEECCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCC NELIKVNKDCPRKRILCNGAEIKGVEMVSISSLTEGINGIINEADKQAIVNKVSESIQQF CCEEEECCCCCCHHEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DRTQANLDELVLLSKSELIRVKPIISELTKASFHLNNILESLDNPETLKDIQELASTSSS HHHHCCHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH LTKKIDQMSSDMGNIMEDKELINALKKVTIGLSKLFDDIYP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MRRSLRDAFVGFSLLGGLVIFSGAMLWLRDFRLGSKTWEISASFKDASGLAKMSPVTYRG CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHCCCCEEEE IIVGSVQKISFTPNTVETKIKLNNDNLILPKPVIAKIVTSSMLGGDAQLSLISLGKSLNK EEEECCEEEEECCCCEEEEEEECCCCEECCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCC NELIKVNKDCPRKRILCNGAEIKGVEMVSISSLTEGINGIINEADKQAIVNKVSESIQQF CCEEEECCCCCCHHEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DRTQANLDELVLLSKSELIRVKPIISELTKASFHLNNILESLDNPETLKDIQELASTSSS HHHHCCHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH LTKKIDQMSSDMGNIMEDKELINALKKVTIGLSKLFDDIYP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA