Click here to switch to the map view.

The map label for this gene is albA1 [H]

Identifier: 124027803

GI number: 124027803

Start: 935449

End: 935745

Strand: Reverse

Name: albA1 [H]

Synonym: Hbut_0930

Alternate gene names: 124027803

Gene position: 935745-935449 (Counterclockwise)

Preceding gene: 124027805

Following gene: 124027801

Centisome position: 56.13

GC content: 52.19

Gene sequence:

>297_bases
ATGGCGCAGGCAACCGCAGCTCCAAGCAATGTAGTTCTAGTAGGTAAGAAGCCTGTAATGAACTACGTACTAGCAACCCT
AACCCTGCTAAACCAGGGCGTCAAGGAGGTAGTCATCAAGGCTAGGGGCCGCGCCATAAGCAAGGCTGTTGACACTGTGG
AGATCGTCAGGAAGAGGTTCCTACCAGACAAGGTTGACGTCAAGGAGATCAAGATTGACAGCCAGGTAATACAGAATCCC
GACGGCCGCCAGAGCAGGGTTAGCACCATCGAGATCGTCCTAGTACGCAAAGACTAA

Upstream 100 bases:

>100_bases
TAACACCAAGCCAGAAAACGCCTTACAGAAAAATGGAAAAGCATAAATACTGCCGTCCCCACGGGTGGGTACACGACACC
AAGGCTTGAGGGGATGCGAA

Downstream 100 bases:

>100_bases
CCCCACACTAGGAGTCTATTGGCGCGATAGAGATGGTTTTTAACTGGGTTAACCACCGCCCAAAGGCCGAAAAACTGCTT
ATAACATTGTTCTCTTATCT

Product: DNA/RNA-binding protein albA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 98; Mature: 97

Protein sequence:

>98_residues
MAQATAAPSNVVLVGKKPVMNYVLATLTLLNQGVKEVVIKARGRAISKAVDTVEIVRKRFLPDKVDVKEIKIDSQVIQNP
DGRQSRVSTIEIVLVRKD

Sequences:

>Translated_98_residues
MAQATAAPSNVVLVGKKPVMNYVLATLTLLNQGVKEVVIKARGRAISKAVDTVEIVRKRFLPDKVDVKEIKIDSQVIQNP
DGRQSRVSTIEIVLVRKD
>Mature_97_residues
AQATAAPSNVVLVGKKPVMNYVLATLTLLNQGVKEVVIKARGRAISKAVDTVEIVRKRFLPDKVDVKEIKIDSQVIQNPD
GRQSRVSTIEIVLVRKD

Specific function: Binds double-stranded DNA tightly but without sequence specificity. It is distributed uniformly and abundantly on the chromosome, suggesting a role in chromatin architecture. However, it does not significantly compact DNA. Binds rRNA and mRNA in vivo. May

COG id: COG1581

COG function: function code K; Archaeal DNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Probable). Chromosome (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the histone-like Alba family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013795
- InterPro:   IPR002775 [H]

Pfam domain/function: PF01918 Alba [H]

EC number: NA

Molecular weight: Translated: 10779; Mature: 10648

Theoretical pI: Translated: 10.81; Mature: 10.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQATAAPSNVVLVGKKPVMNYVLATLTLLNQGVKEVVIKARGRAISKAVDTVEIVRKRF
CCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
LPDKVDVKEIKIDSQVIQNPDGRQSRVSTIEIVLVRKD
CCCCCCHHHEEECHHHHCCCCCCCCCCEEEEEEEEECC
>Mature Secondary Structure 
AQATAAPSNVVLVGKKPVMNYVLATLTLLNQGVKEVVIKARGRAISKAVDTVEIVRKRF
CCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
LPDKVDVKEIKIDSQVIQNPDGRQSRVSTIEIVLVRKD
CCCCCCHHHEEECHHHHCCCCCCCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11572479 [H]