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The map label for this gene is rpoK [H]

Identifier: 124027790

GI number: 124027790

Start: 923418

End: 923726

Strand: Reverse

Name: rpoK [H]

Synonym: Hbut_0917

Alternate gene names: 124027790

Gene position: 923726-923418 (Counterclockwise)

Preceding gene: 124027791

Following gene: 124027789

Centisome position: 55.41

GC content: 47.25

Gene sequence:

>309_bases
ATGACAACAGAGGAATACAACATCGAAGAGTTGAAGGCTAGGATAAAGATTGGGCCACCATGGCTAACCAGGTTTGAACG
TGCACGTGTAATAGGTGTAAGGGCTCTCCAGATAAGTATGGGTGCACCGGTACTAATTGATGTTGAAAAGCTTCCACGGC
ATGTTAGAGAGGACCCTGTGCTAATCGCTAAGAAGGAACTTGAGATCGGGGTACTGCCTATGACTATTGTTAGGTATACT
CGTCGAGGCGATGTACAGCCGATACCACTCAAGTGGCTCGTCGTCCTTGATAGGCTTAGGGTTAAGTAG

Upstream 100 bases:

>100_bases
CCGGCTCTCTTTGTTCTCAAAACTAAATACACTACTCCCCCCAAATCTCATGTTTTAGTTTTAAATATCTCTACAAGGTA
GTAGCTGTGCGGGGACCTTT

Downstream 100 bases:

>100_bases
GGTCGTAGCTAGCTAACCTTAAGCTATATGCCTTCCGTTAGCTCTCCTAGCTGTTTTAAAGGAACAACATATTCTATTGC
TTAATCCTAGCTAGCTTAGT

Product: DNA-directed RNA polymerase subunit K

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 102; Mature: 101

Protein sequence:

>102_residues
MTTEEYNIEELKARIKIGPPWLTRFERARVIGVRALQISMGAPVLIDVEKLPRHVREDPVLIAKKELEIGVLPMTIVRYT
RRGDVQPIPLKWLVVLDRLRVK

Sequences:

>Translated_102_residues
MTTEEYNIEELKARIKIGPPWLTRFERARVIGVRALQISMGAPVLIDVEKLPRHVREDPVLIAKKELEIGVLPMTIVRYT
RRGDVQPIPLKWLVVLDRLRVK
>Mature_101_residues
TTEEYNIEELKARIKIGPPWLTRFERARVIGVRALQISMGAPVLIDVEKLPRHVREDPVLIAKKELEIGVLPMTIVRYTR
RGDVQPIPLKWLVVLDRLRVK

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates [H]

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the archaeal rpoK/eukaryotic RPB6 RNA polymerase subunit family [H]

Homologues:

Organism=Homo sapiens, GI11527390, Length=82, Percent_Identity=41.4634146341463, Blast_Score=63, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17531543, Length=78, Percent_Identity=42.3076923076923, Blast_Score=62, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6325445, Length=76, Percent_Identity=43.421052631579, Blast_Score=63, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020708
- InterPro:   IPR006111
- InterPro:   IPR006110
- InterPro:   IPR012293 [H]

Pfam domain/function: PF01192 RNA_pol_Rpb6 [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 11848; Mature: 11717

Theoretical pI: Translated: 10.72; Mature: 10.72

Prosite motif: PS01111 RNA_POL_K_14KD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTEEYNIEELKARIKIGPPWLTRFERARVIGVRALQISMGAPVLIDVEKLPRHVREDPV
CCCCCCCHHHHEEEEEECCHHHHHHHHHEEEEEEEEEEECCCCEEEEHHHHHHHCCCCCE
LIAKKELEIGVLPMTIVRYTRRGDVQPIPLKWLVVLDRLRVK
EEEECCCEECCCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
TTEEYNIEELKARIKIGPPWLTRFERARVIGVRALQISMGAPVLIDVEKLPRHVREDPV
CCCCCCHHHHEEEEEECCHHHHHHHHHEEEEEEEEEEECCCCEEEEHHHHHHHCCCCCE
LIAKKELEIGVLPMTIVRYTRRGDVQPIPLKWLVVLDRLRVK
EEEECCCEECCCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA