Click here to switch to the map view.

The map label for this gene is radA [C]

Identifier: 124027732

GI number: 124027732

Start: 859316

End: 860140

Strand: Reverse

Name: radA [C]

Synonym: Hbut_0856

Alternate gene names: 124027732

Gene position: 860140-859316 (Counterclockwise)

Preceding gene: 124027736

Following gene: 124027731

Centisome position: 51.59

GC content: 49.94

Gene sequence:

>825_bases
ATGGCTTCGACCAAGCCATCTATAGAGAGATTGCCGACTGGCGTGCCAGGATTTGATAAGCTGATACAGGGAGGTATCCC
TCGGGGCTTCTTTGTAGCTGTTGTGGGAGAGCCGGGTACGGGCAAGACGATATTCTCAATACACTTCATAGCCGAAGGTA
TTAGGCAGGGAGACAAGAACATATATGTGACAACGGAGGAGACAAGGGAAAGTATAATAAAGCAAGCGGCAATGTTCGGT
TTTGACTTCGAGAAGGCGATAGATGATGGAAAGCTAGTCATAATAGACGCGCTTATGGGACGACACGACGATCCATGGTC
CCTAACCGAGCTAGATGTGGAGACGCTTGTAAACAAGATCATAGAGGCTAAACGCTACCTAGGCTATGGCAGGGCACGCC
TAGTAATAGACTCCATGTCGGCCTTCTGGCTCGACAAGCCAGCAATGGCCAGGAGATACAGCTACTATGTTAAGAGGATA
CTGGCGCGCTGGGACTTCACAGCACTACTAACAAGCCAGTATGCTGTAACAACAAGTCTAGGCTTTGGCTTCGGCATAGA
ACACGTAGCTGATGGCATTATAAGATTTCGCAAAGCCGTAGTGAGAGGAGAGCTCCGGAGATACGTTATAATCGAGAAGA
TGAGACAGACCGAACACAGCCTACGGATGCACGAGATAGAGATACGCGACGGTGTAGGCATGCGGGTCAAAGCGCCAACA
CAGCTACGCAAAGAGGATACAGCGCTTCCACAGTCTGTTGCAGCAAAAATGCTAGCAGCCGAGCTACAAAAACTCCTCGA
AGTCCCGCTGGGCGATGAAGAGTAG

Upstream 100 bases:

>100_bases
GGGTTCTGCGCATACCTTACACCATAAACTGTGACTAGTCCCAAGGGGAAATTAGGGCGGAAACAAGTACAACTAAACGT
ATCTGGGTGCGGTAGAACCT

Downstream 100 bases:

>100_bases
CTTGCTCACAAGGTTCACAGGGAGGGACAGTCTTTAACTCCTACCGCTACAGCCATGAAACCCTAGGTGTGCACGGTTGA
CAAGACGTGCAAGCTACTAC

Product: ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 273

Protein sequence:

>274_residues
MASTKPSIERLPTGVPGFDKLIQGGIPRGFFVAVVGEPGTGKTIFSIHFIAEGIRQGDKNIYVTTEETRESIIKQAAMFG
FDFEKAIDDGKLVIIDALMGRHDDPWSLTELDVETLVNKIIEAKRYLGYGRARLVIDSMSAFWLDKPAMARRYSYYVKRI
LARWDFTALLTSQYAVTTSLGFGFGIEHVADGIIRFRKAVVRGELRRYVIIEKMRQTEHSLRMHEIEIRDGVGMRVKAPT
QLRKEDTALPQSVAAKMLAAELQKLLEVPLGDEE

Sequences:

>Translated_274_residues
MASTKPSIERLPTGVPGFDKLIQGGIPRGFFVAVVGEPGTGKTIFSIHFIAEGIRQGDKNIYVTTEETRESIIKQAAMFG
FDFEKAIDDGKLVIIDALMGRHDDPWSLTELDVETLVNKIIEAKRYLGYGRARLVIDSMSAFWLDKPAMARRYSYYVKRI
LARWDFTALLTSQYAVTTSLGFGFGIEHVADGIIRFRKAVVRGELRRYVIIEKMRQTEHSLRMHEIEIRDGVGMRVKAPT
QLRKEDTALPQSVAAKMLAAELQKLLEVPLGDEE
>Mature_273_residues
ASTKPSIERLPTGVPGFDKLIQGGIPRGFFVAVVGEPGTGKTIFSIHFIAEGIRQGDKNIYVTTEETRESIIKQAAMFGF
DFEKAIDDGKLVIIDALMGRHDDPWSLTELDVETLVNKIIEAKRYLGYGRARLVIDSMSAFWLDKPAMARRYSYYVKRIL
ARWDFTALLTSQYAVTTSLGFGFGIEHVADGIIRFRKAVVRGELRRYVIIEKMRQTEHSLRMHEIEIRDGVGMRVKAPTQ
LRKEDTALPQSVAAKMLAAELQKLLEVPLGDEE

Specific function: May Play A Role In The Repair Of Endogenous Alkylation Damage. [C]

COG id: COG0467

COG function: function code T; RecA-superfamily ATPases implicated in signal transduction

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 kaiC domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR020588
- InterPro:   IPR004504
- InterPro:   IPR010624
- InterPro:   IPR022475 [H]

Pfam domain/function: PF06745 KaiC [H]

EC number: NA

Molecular weight: Translated: 30866; Mature: 30735

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: PS51146 KAIC ; PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASTKPSIERLPTGVPGFDKLIQGGIPRGFFVAVVGEPGTGKTIFSIHFIAEGIRQGDKN
CCCCCCCHHHCCCCCCCHHHHHHCCCCCCEEEEEEECCCCCCEEEHHHHHHHHHHCCCCE
IYVTTEETRESIIKQAAMFGFDFEKAIDDGKLVIIDALMGRHDDPWSLTELDVETLVNKI
EEEEEHHHHHHHHHHHHHHCCCHHHHCCCCCEEEEEHHHCCCCCCCCHHHHHHHHHHHHH
IEAKRYLGYGRARLVIDSMSAFWLDKPAMARRYSYYVKRILARWDFTALLTSQYAVTTSL
HHHHHHHCCCHHHEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GFGFGIEHVADGIIRFRKAVVRGELRRYVIIEKMRQTEHSLRMHEIEIRDGVGMRVKAPT
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCEEECCH
QLRKEDTALPQSVAAKMLAAELQKLLEVPLGDEE
HHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
ASTKPSIERLPTGVPGFDKLIQGGIPRGFFVAVVGEPGTGKTIFSIHFIAEGIRQGDKN
CCCCCCHHHCCCCCCCHHHHHHCCCCCCEEEEEEECCCCCCEEEHHHHHHHHHHCCCCE
IYVTTEETRESIIKQAAMFGFDFEKAIDDGKLVIIDALMGRHDDPWSLTELDVETLVNKI
EEEEEHHHHHHHHHHHHHHCCCHHHHCCCCCEEEEEHHHCCCCCCCCHHHHHHHHHHHHH
IEAKRYLGYGRARLVIDSMSAFWLDKPAMARRYSYYVKRILARWDFTALLTSQYAVTTSL
HHHHHHHCCCHHHEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GFGFGIEHVADGIIRFRKAVVRGELRRYVIIEKMRQTEHSLRMHEIEIRDGVGMRVKAPT
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCEEECCH
QLRKEDTALPQSVAAKMLAAELQKLLEVPLGDEE
HHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]