| Definition | Prochlorococcus marinus str. MIT 9515, complete genome. |
|---|---|
| Accession | NC_008817 |
| Length | 1,704,176 |
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The map label for this gene is nudF [H]
Identifier: 123965554
GI number: 123965554
Start: 295296
End: 295856
Strand: Reverse
Name: nudF [H]
Synonym: P9515_03191
Alternate gene names: 123965554
Gene position: 295856-295296 (Counterclockwise)
Preceding gene: 123965555
Following gene: 123965553
Centisome position: 17.36
GC content: 32.62
Gene sequence:
>561_bases ATGGATGATAACATTCACTTCAAAAAAGCCATTTTTAAAGAAAAAATCTCCGAGTTAAAAACAAAAAAATTTAGTTTTGA AATCAATAGAATTGAGCTACCTAATGGACATGAAGATGAATATGGACAAATAATATTCCCAAACGCTGCATTAGCTGTTC CCATAACAAACGAAAATAAAGTTATACTCCTGCGCCAATACAGATTTGCTGTATCTAGATATTTGCTGGAATTTCCAGCA GGTACTTTAGAAATTGGAGAGACCCCAATAAACTCAATCAAAAGAGAAATTCAGGAGGAGGCTGGATATAAAGCAGAAAA ATGGGATAAACTAGGAGCTCTAGTAAATGCTCCTGGATATTCAGATGAAGTCATTCATTTATTTCTTGCACGTGATTTAA GTAAATTAAAAAATAAGGTAAAAGGGGATTTAGACGAAGATATAGAAGTTTTGCTTATGGATCCTCAGAATTTAGATAAT TTAATTTCTTGTGGTGATGAAGTCCTTGATGCAAAGACAGTAACAGCTTGGTTTAGAGCAAAGCAATTTTTAGGAATTTA A
Upstream 100 bases:
>100_bases AAGTAGAACACAAACAGTTAAAAAAGTTGAAGAAGAAAGATGGCTTGTTGATTAATTTCCAAAATCCTAAAATAACTGTT AGGGTATTTTTATTTAAATT
Downstream 100 bases:
>100_bases TGAATAATCCCAGAATACTTTTTTGGCATAGAAAAGATCTTCGAATTTATGACAATAACGCTTTGTCAAAAGCATTTTCT TTATCAAATGCTATTACTTC
Product: NUDIX hydrolase
Products: NA
Alternate protein names: ADP-ribose diphosphatase; ADP-ribose phosphohydrolase; ASPPase; Adenosine diphosphoribose pyrophosphatase; ADPR-PPase [H]
Number of amino acids: Translated: 186; Mature: 186
Protein sequence:
>186_residues MDDNIHFKKAIFKEKISELKTKKFSFEINRIELPNGHEDEYGQIIFPNAALAVPITNENKVILLRQYRFAVSRYLLEFPA GTLEIGETPINSIKREIQEEAGYKAEKWDKLGALVNAPGYSDEVIHLFLARDLSKLKNKVKGDLDEDIEVLLMDPQNLDN LISCGDEVLDAKTVTAWFRAKQFLGI
Sequences:
>Translated_186_residues MDDNIHFKKAIFKEKISELKTKKFSFEINRIELPNGHEDEYGQIIFPNAALAVPITNENKVILLRQYRFAVSRYLLEFPA GTLEIGETPINSIKREIQEEAGYKAEKWDKLGALVNAPGYSDEVIHLFLARDLSKLKNKVKGDLDEDIEVLLMDPQNLDN LISCGDEVLDAKTVTAWFRAKQFLGI >Mature_186_residues MDDNIHFKKAIFKEKISELKTKKFSFEINRIELPNGHEDEYGQIIFPNAALAVPITNENKVILLRQYRFAVSRYLLEFPA GTLEIGETPINSIKREIQEEAGYKAEKWDKLGALVNAPGYSDEVIHLFLARDLSKLKNKVKGDLDEDIEVLLMDPQNLDN LISCGDEVLDAKTVTAWFRAKQFLGI
Specific function: Acts on ADP-mannose and ADP-glucose as well as ADP- ribose. Prevents glycogen biosynthesis. The reaction catalyzed by this enzyme is a limiting step of the gluconeogenic process [H]
COG id: COG0494
COG function: function code LR; NTP pyrophosphohydrolases including oxidative damage repair enzymes
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 nudix hydrolase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004385 - InterPro: IPR020476 - InterPro: IPR020084 - InterPro: IPR000086 - InterPro: IPR015797 [H]
Pfam domain/function: PF00293 NUDIX [H]
EC number: =3.6.1.13 [H]
Molecular weight: Translated: 21226; Mature: 21226
Theoretical pI: Translated: 4.99; Mature: 4.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDDNIHFKKAIFKEKISELKTKKFSFEINRIELPNGHEDEYGQIIFPNAALAVPITNENK CCCCHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCEEEECCCEEEEEECCCCC VILLRQYRFAVSRYLLEFPAGTLEIGETPINSIKREIQEEAGYKAEKWDKLGALVNAPGY EEEEHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHEECCCCC SDEVIHLFLARDLSKLKNKVKGDLDEDIEVLLMDPQNLDNLISCGDEVLDAKTVTAWFRA CHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHCCHHHHHHHHHHHHHHH KQFLGI HHHHCC >Mature Secondary Structure MDDNIHFKKAIFKEKISELKTKKFSFEINRIELPNGHEDEYGQIIFPNAALAVPITNENK CCCCHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCEEEECCCEEEEEECCCCC VILLRQYRFAVSRYLLEFPAGTLEIGETPINSIKREIQEEAGYKAEKWDKLGALVNAPGY EEEEHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHEECCCCC SDEVIHLFLARDLSKLKNKVKGDLDEDIEVLLMDPQNLDNLISCGDEVLDAKTVTAWFRA CHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHCCHHHHHHHHHHHHHHH KQFLGI HHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8969508; 9384377; 10542272 [H]